Wall clock time and date at job start Tue Mar 31 2020 10:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46961 * 111.00225 * 293.79408 * 10 9 7 12 12 C 1.53043 * 109.36613 * 176.81617 * 11 10 9 13 13 N 1.46957 * 109.36458 * 58.40176 * 12 11 10 14 14 C 1.46902 * 110.99807 * 176.80904 * 13 12 11 15 15 C 1.50700 * 109.47526 * 293.80311 * 14 13 12 16 16 C 1.38505 * 120.44327 * 89.99909 * 15 14 13 17 17 F 1.35099 * 119.63845 * 359.97438 * 16 15 14 18 18 N 1.32049 * 120.71455 * 180.02562 * 16 15 14 19 19 C 1.31957 * 121.72302 * 0.02562 * 18 16 15 20 20 C 1.38047 * 120.81190 * 0.02562 * 19 18 16 21 21 C 1.38656 * 120.43862 * 269.72378 * 15 14 13 22 22 Cl 1.73601 * 120.78723 * 359.97438 * 21 15 14 23 23 C 1.46947 * 110.88220 * 300.67806 * 13 12 11 24 24 C 1.46964 * 110.99832 * 170.00196 * 10 9 7 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09000 * 109.48905 * 296.78868 * 11 10 9 29 29 H 1.09006 * 109.48522 * 56.84713 * 11 10 9 30 30 H 1.09006 * 109.48883 * 298.43392 * 12 11 10 31 31 H 1.09004 * 109.48849 * 178.36912 * 12 11 10 32 32 H 1.09002 * 109.47270 * 53.80234 * 14 13 12 33 33 H 1.09002 * 109.47092 * 173.80239 * 14 13 12 34 34 H 1.07997 * 119.59229 * 180.02562 * 19 18 16 35 35 H 1.08000 * 120.39261 * 179.97438 * 20 19 18 36 36 H 1.08995 * 109.49351 * 299.35633 * 23 13 12 37 37 H 1.08997 * 109.49010 * 179.28744 * 23 13 12 38 38 H 1.09004 * 109.48449 * 303.15139 * 24 10 9 39 39 H 1.09004 * 109.48782 * 63.21327 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 2.9686 -3.6508 -1.2657 12 6 4.0040 -4.7758 -1.1990 13 7 3.3192 -6.0551 -0.9665 14 6 4.2738 -7.1717 -0.9714 15 6 4.8579 -7.3272 -2.3519 16 6 6.0113 -6.6473 -2.7065 17 9 6.6142 -5.8397 -1.8068 18 7 6.5275 -6.7792 -3.9148 19 6 5.9718 -7.5556 -4.8257 20 6 4.8204 -8.2632 -4.5445 21 6 4.2509 -8.1572 -3.2821 22 17 2.8082 -9.0357 -2.8814 23 6 2.5562 -6.0202 0.2889 24 6 1.5207 -4.8951 0.2222 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.2895 -3.8304 -2.0992 29 1 3.4766 -2.6970 -1.4092 30 1 4.6996 -4.5820 -0.3824 31 1 4.5516 -4.8223 -2.1403 32 1 5.0736 -6.9691 -0.2592 33 1 3.7597 -8.0904 -0.6889 34 1 6.4235 -7.6384 -5.8032 35 1 4.3711 -8.8963 -5.2953 36 1 3.2352 -5.8404 1.1223 37 1 2.0482 -6.9738 0.4324 38 1 0.9731 -4.8486 1.1635 39 1 0.8251 -5.0889 -0.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232615077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:23 Heat of formation + Delta-G solvation = -15.480546 kcal Electronic energy + Delta-G solvation = -23983.431629 eV Core-core repulsion = 20286.863176 eV Total energy + Delta-G solvation = -3696.568453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 313.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.25843 -41.38617 -40.09509 -37.83748 -36.95753 -34.79372 -33.58901 -32.49524 -31.86020 -30.00048 -27.79969 -25.75088 -25.00483 -24.40238 -23.51345 -22.77424 -20.69672 -19.30109 -18.72583 -18.50217 -17.83030 -17.10021 -16.85556 -16.38583 -16.15463 -15.90210 -15.86642 -15.42281 -15.14435 -15.04227 -14.84932 -14.55220 -14.44867 -13.96884 -13.65315 -13.48146 -13.16149 -13.04163 -12.88819 -12.73100 -12.48688 -12.29486 -12.15719 -12.11826 -11.93102 -11.57829 -11.23032 -10.89164 -10.62927 -10.59196 -10.14103 -9.43511 -9.06004 -8.22055 -6.32414 -0.32369 -0.23782 0.80211 1.39674 1.42859 1.50865 2.28421 2.39015 2.43400 2.90574 3.09969 3.25854 3.32749 3.48721 3.54286 3.90889 4.04032 4.14634 4.23871 4.25118 4.33092 4.42702 4.47649 4.52268 4.60686 4.66480 4.80009 4.81251 4.93176 4.98826 5.00118 5.18408 5.25703 5.35314 5.61650 5.88468 5.92825 6.03606 6.29564 6.46333 6.60262 6.82681 7.37259 8.88989 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003556 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.847908 B = 7873.117378 C = 8636.054318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.543 5.543 11 C 0.074 3.926 12 C 0.075 3.925 13 N -0.534 5.534 14 C 0.097 3.903 15 C -0.153 4.153 16 C 0.305 3.695 17 F -0.117 7.117 18 N -0.535 5.535 19 C 0.150 3.850 20 C -0.163 4.163 21 C 0.039 3.961 22 Cl -0.025 7.025 23 C 0.072 3.928 24 C 0.055 3.945 25 H 0.265 0.735 26 H 0.007 0.993 27 H -0.040 1.040 28 H 0.014 0.986 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.216 0.784 35 H 0.189 0.811 36 H 0.043 0.957 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.384 -22.636 -8.845 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.268 5.268 11 C -0.055 4.055 12 C -0.053 4.053 13 N -0.259 5.259 14 C -0.031 4.031 15 C -0.158 4.158 16 C 0.152 3.848 17 F -0.096 7.096 18 N -0.249 5.249 19 C -0.006 4.006 20 C -0.183 4.183 21 C 0.004 3.996 22 Cl 0.005 6.995 23 C -0.055 4.055 24 C -0.074 4.074 25 H 0.074 0.926 26 H 0.025 0.975 27 H -0.023 1.023 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.233 0.767 35 H 0.207 0.793 36 H 0.061 0.939 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 10.864 -22.111 -8.929 26.204 hybrid contribution -0.729 0.981 0.534 1.334 sum 10.135 -21.130 -8.395 24.893 Atomic orbital electron populations 1.70078 1.07703 1.28010 1.51597 1.25896 0.95737 1.03123 0.94677 0.85454 0.78205 0.77974 0.79103 1.19376 1.20597 1.19281 1.21414 0.93494 0.91156 1.50371 0.92157 1.19340 0.90019 0.88864 0.93425 1.62219 1.27360 1.03282 1.33971 1.21886 0.95498 0.97980 0.90088 1.22030 0.94701 0.88414 1.00137 1.62189 1.25570 1.02442 1.35684 1.20950 0.94967 0.96245 0.90899 1.20364 0.95901 1.00070 0.99470 1.17999 0.89924 0.90679 0.86227 1.91625 1.83100 1.70419 1.64439 1.67113 1.35286 1.21286 1.01265 1.23284 0.91128 0.88003 0.98185 1.22573 0.97397 1.02525 0.95777 1.21155 0.89832 0.94224 0.94376 1.98420 1.34351 1.72901 1.93839 1.22116 0.95272 0.98697 0.89455 1.22177 0.95662 0.89243 1.00309 0.92610 0.97486 1.02261 0.96756 0.91737 0.94343 0.91431 0.92813 0.86950 0.76724 0.79344 0.93867 0.87579 0.90567 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -30.73 8.47 25.60 0.22 -30.52 16 8 H 0.06 3.47 7.13 -2.91 -0.02 3.45 16 9 C 0.21 11.61 4.72 85.56 0.40 12.01 16 10 N -0.54 -24.61 4.70 -900.26 -4.23 -28.85 16 11 C 0.07 3.12 5.43 86.31 0.47 3.59 16 12 C 0.08 2.53 4.59 86.31 0.40 2.93 16 13 N -0.53 -15.17 4.70 -900.31 -4.23 -19.41 16 14 C 0.10 2.18 4.62 85.56 0.40 2.57 16 15 C -0.15 -3.37 4.91 -19.70 -0.10 -3.46 16 16 C 0.31 7.54 7.05 84.72 0.60 8.13 16 17 F -0.12 -3.27 15.11 44.97 0.68 -2.59 16 18 N -0.53 -11.91 10.37 -196.99 -2.04 -13.95 16 19 C 0.15 2.03 11.18 84.63 0.95 2.97 16 20 C -0.16 -1.98 9.93 22.38 0.22 -1.76 16 21 C 0.04 0.70 6.36 22.53 0.14 0.84 16 22 Cl -0.02 -0.41 27.49 -2.72 -0.07 -0.48 16 23 C 0.07 2.03 5.61 86.31 0.48 2.51 16 24 C 0.05 2.00 5.61 86.31 0.48 2.49 16 25 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 26 H 0.01 0.42 8.03 -2.38 -0.02 0.40 16 27 H -0.04 -2.44 8.12 -2.39 -0.02 -2.45 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.95 6.79 -2.38 -0.02 2.93 16 30 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 2.20 5.64 -2.39 -0.01 2.19 16 32 H 0.05 1.22 7.64 -2.39 -0.02 1.20 16 33 H 0.11 2.09 6.89 -2.39 -0.02 2.07 16 34 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 2.32 8.07 -2.39 -0.02 2.30 16 38 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -70.16 333.82 -1.40 -71.57 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.06 Total: 0.39 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 5.12 Total: 2.99 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -10.22 Total: -119.11 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.68 Total: -2.59 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.07 Total: -0.48 kcal Total: -70.16 -1.40 -71.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232615077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.088 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds