Wall clock time and date at job start Tue Mar 31 2020 11:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47647 * 2 1 4 4 C 1.52991 * 109.47647 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47220 * 179.97438 * 4 3 2 6 6 C 1.36943 * 120.00012 * 270.00017 * 5 4 3 7 7 H 1.08000 * 119.99872 * 319.36436 * 6 5 4 8 8 C 1.38815 * 119.99731 * 139.36054 * 6 5 4 9 9 N 1.31617 * 119.99656 * 41.98986 * 8 6 5 10 10 Si 1.86796 * 119.99771 * 221.98653 * 8 6 5 11 11 H 1.48491 * 109.47279 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46968 * 120.00868 * 10 8 6 13 13 H 1.48503 * 109.46952 * 240.00101 * 10 8 6 14 14 C 1.46498 * 120.00084 * 89.99967 * 5 4 3 15 15 C 1.50703 * 109.47051 * 94.95406 * 14 5 4 16 16 C 1.38776 * 119.98214 * 73.92102 * 15 14 5 17 17 O 1.35900 * 120.01736 * 0.04692 * 16 15 14 18 18 C 1.38624 * 119.96068 * 180.02562 * 16 15 14 19 19 C 1.38664 * 119.91740 * 0.02562 * 18 16 15 20 20 O 1.35894 * 120.02200 * 180.02562 * 19 18 16 21 21 C 1.42904 * 116.99892 * 179.97438 * 20 19 18 22 22 C 1.38735 * 119.95501 * 0.27423 * 19 18 16 23 23 C 1.38271 * 119.97959 * 253.94787 * 15 14 5 24 24 Cl 1.73603 * 119.95904 * 359.95117 * 23 15 14 25 25 H 1.08998 * 109.47501 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46894 * 299.99852 * 1 2 3 27 27 H 1.08997 * 109.47370 * 59.99503 * 1 2 3 28 28 H 1.09005 * 109.47120 * 239.99647 * 2 1 3 29 29 H 1.09001 * 109.47203 * 120.00025 * 2 1 3 30 30 H 1.09005 * 109.47148 * 59.99664 * 3 2 1 31 31 H 1.09001 * 109.46839 * 300.00247 * 3 2 1 32 32 H 1.09004 * 109.46894 * 60.00148 * 4 3 2 33 33 H 1.09001 * 109.47203 * 300.00025 * 4 3 2 34 34 H 0.97005 * 119.99498 * 184.81013 * 9 8 6 35 35 H 1.08996 * 109.46998 * 334.96067 * 14 5 4 36 36 H 1.08997 * 109.47498 * 214.94838 * 14 5 4 37 37 H 0.96701 * 113.99851 * 263.30089 * 17 16 15 38 38 H 1.07997 * 120.03891 * 180.02562 * 18 16 15 39 39 H 1.08995 * 109.47140 * 299.99774 * 21 20 19 40 40 H 1.08998 * 109.46772 * 59.99910 * 21 20 19 41 41 H 1.09001 * 109.46277 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.97527 * 179.73002 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1875 7 1 4.7451 2.9406 -2.0101 8 6 3.9268 4.8018 -1.3327 9 7 4.1563 5.6551 -0.3572 10 14 3.1178 5.3843 -2.9124 11 1 2.9712 4.2384 -3.8452 12 1 1.7781 5.9461 -2.6044 13 1 3.9606 6.4319 -3.5430 14 6 4.3030 3.5146 1.2671 15 6 5.7569 3.3799 1.6402 16 6 6.7184 4.1134 0.9596 17 8 6.3491 4.9538 -0.0425 18 6 8.0557 3.9887 1.3028 19 6 8.4301 3.1305 2.3256 20 8 9.7404 3.0070 2.6642 21 6 10.0534 2.1051 3.7276 22 6 7.4666 2.3941 2.9996 23 6 6.1321 2.5250 2.6602 24 17 4.9275 1.6088 3.5107 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 3.8431 6.5703 -0.4298 35 1 3.6851 3.0709 2.0477 36 1 4.0517 4.5699 1.1605 37 1 6.4285 4.5703 -0.9267 38 1 8.8050 4.5592 0.7742 39 1 9.5449 2.4252 4.6370 40 1 9.7238 1.1009 3.4612 41 1 11.1304 2.1012 3.8953 42 1 7.7582 1.7224 3.7933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236804810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:22 Heat of formation + Delta-G solvation = -44.739698 kcal Electronic energy + Delta-G solvation = -24914.482855 eV Core-core repulsion = 21307.813183 eV Total energy + Delta-G solvation = -3606.669672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17947 -39.40681 -37.69118 -37.56953 -36.16584 -35.42542 -33.27305 -31.82952 -30.73047 -29.17377 -28.24631 -26.77085 -25.21684 -23.41703 -22.91595 -21.98072 -21.32154 -19.50440 -18.62520 -17.68781 -17.57203 -16.62287 -16.54853 -16.30686 -16.06424 -15.75858 -15.35830 -15.22895 -14.90618 -14.70088 -14.51416 -13.78570 -13.76809 -13.63699 -13.30511 -13.17845 -13.07905 -12.71233 -12.66014 -12.51574 -12.18485 -12.14267 -11.89171 -11.83321 -11.74625 -11.55555 -11.44037 -11.28015 -11.16519 -10.99548 -9.89858 -9.46981 -8.91043 -8.42899 -7.88760 -5.09083 0.25213 0.49895 1.20812 1.47722 1.61658 1.66896 2.36283 2.59202 2.69425 3.15472 3.82623 3.91788 4.04931 4.20761 4.23739 4.34802 4.36023 4.38867 4.43113 4.48485 4.57745 4.64072 4.73456 4.85145 4.94605 5.00608 5.07942 5.11903 5.13380 5.20282 5.22539 5.35085 5.43455 5.57475 5.62806 5.69734 5.78229 5.84807 6.16093 6.43125 6.63105 7.34953 7.35593 8.00716 8.63568 9.05646 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.005932 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.686486 B = 4718.875883 C = 6650.529755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.158 3.842 5 N -0.596 5.596 6 C -0.309 4.309 7 H 0.053 0.947 8 C 0.045 3.955 9 N -0.805 5.805 10 Si 0.874 3.126 11 H -0.282 1.282 12 H -0.300 1.300 13 H -0.298 1.298 14 C 0.165 3.835 15 C -0.141 4.141 16 C 0.178 3.822 17 O -0.446 6.446 18 C -0.207 4.207 19 C 0.140 3.860 20 O -0.328 6.328 21 C 0.017 3.983 22 C -0.219 4.219 23 C 0.002 3.998 24 Cl -0.066 7.066 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.250 0.750 35 H 0.033 0.967 36 H 0.105 0.895 37 H 0.384 0.616 38 H 0.136 0.864 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -9.170 7.915 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.032 3.968 5 N -0.318 5.318 6 C -0.436 4.436 7 H 0.071 0.929 8 C -0.160 4.160 9 N -0.442 5.442 10 Si 0.701 3.299 11 H -0.208 1.208 12 H -0.227 1.227 13 H -0.226 1.226 14 C 0.040 3.960 15 C -0.145 4.145 16 C 0.131 3.869 17 O -0.256 6.256 18 C -0.226 4.226 19 C 0.094 3.906 20 O -0.242 6.242 21 C -0.077 4.077 22 C -0.238 4.238 23 C -0.026 4.026 24 Cl -0.037 7.037 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.243 0.757 38 H 0.154 0.846 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.384 -8.559 8.385 13.136 hybrid contribution -0.675 0.176 -1.229 1.413 sum 4.709 -8.383 7.157 11.987 Atomic orbital electron populations 1.21737 0.95425 1.01888 1.01357 1.21452 0.96227 0.96001 1.01782 1.22027 0.98231 0.96296 0.99956 1.20862 0.92155 0.85473 0.98345 1.43903 1.75214 1.11370 1.01280 1.18568 1.39728 0.94383 0.90917 0.92898 1.25666 0.97376 0.96086 0.96847 1.70304 1.36398 1.02955 1.34507 0.86773 0.80108 0.77325 0.85728 1.20778 1.22713 1.22566 1.20832 0.86982 1.01438 0.86724 1.21261 1.01278 0.95916 0.96047 1.18124 0.89132 0.88319 0.91333 1.85078 1.87796 1.36733 1.15952 1.20955 0.96172 1.03792 1.01726 1.18419 0.83251 0.94874 0.94068 1.86048 1.21069 1.63221 1.53878 1.23376 1.03877 0.92371 0.88097 1.21028 0.90716 1.06372 1.05681 1.20461 0.89630 0.96627 0.95837 1.98307 1.56757 1.72575 1.76038 0.91412 0.93186 0.93459 0.92058 0.91855 0.94313 0.94315 0.94772 0.93886 0.93890 0.94840 0.87769 0.75729 0.84626 0.91799 0.91859 0.85763 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.32 5.93 30.59 0.18 -3.13 16 3 C -0.13 -4.59 5.54 30.59 0.17 -4.42 16 4 C 0.16 6.33 5.64 86.38 0.49 6.81 16 5 N -0.60 -27.48 2.50 -706.36 -1.77 -29.25 16 6 C -0.31 -15.25 7.20 84.03 0.60 -14.65 16 7 H 0.05 2.71 8.06 -2.91 -0.02 2.68 16 8 C 0.04 2.24 4.53 84.86 0.38 2.63 16 9 N -0.81 -41.30 7.84 21.65 0.17 -41.13 16 10 Si 0.87 40.55 29.69 68.60 2.04 42.59 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 14 C 0.17 7.57 5.22 85.63 0.45 8.02 16 15 C -0.14 -5.93 5.47 -19.73 -0.11 -6.04 16 16 C 0.18 7.52 6.57 22.49 0.15 7.67 16 17 O -0.45 -20.34 8.67 -92.42 -0.80 -21.14 16 18 C -0.21 -7.63 9.92 22.46 0.22 -7.41 16 19 C 0.14 4.56 6.68 22.49 0.15 4.71 16 20 O -0.33 -9.11 10.49 -92.36 -0.97 -10.08 16 21 C 0.02 0.30 9.81 113.37 1.11 1.41 16 22 C -0.22 -6.84 8.82 22.41 0.20 -6.64 16 23 C 0.00 0.08 6.31 22.30 0.14 0.22 16 24 Cl -0.07 -2.11 26.76 -2.72 -0.07 -2.18 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.38 8.04 -2.38 -0.02 1.36 16 33 H 0.04 1.64 7.78 -2.39 -0.02 1.62 16 34 H 0.25 12.72 8.32 -92.70 -0.77 11.95 16 35 H 0.03 1.47 6.22 -2.39 -0.01 1.45 16 36 H 0.11 5.48 4.83 -2.39 -0.01 5.47 16 37 H 0.38 17.16 7.24 -74.06 -0.54 16.63 16 38 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 40 H 0.06 1.00 7.65 -2.39 -0.02 0.98 16 41 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.16 3.83 6.29 -2.91 -0.02 3.81 16 Total: -1.00 -55.29 350.13 3.94 -51.34 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.49 Total: 23.60 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.85 Total: -13.76 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -1.60 Total: -70.38 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -1.77 Total: -31.22 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.04 Total: 42.59 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -55.29 3.94 -51.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236804810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.604 kcal (2) G-P(sol) polarization free energy of solvation -55.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds