Wall clock time and date at job start Tue Mar 31 2020 10:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 120.00320 * 2 1 4 4 N 1.34782 * 119.99790 * 179.97438 * 2 1 3 5 5 C 1.39931 * 119.99670 * 184.30675 * 4 2 1 6 6 C 1.39357 * 120.78738 * 335.01320 * 5 4 2 7 7 N 1.32098 * 119.11401 * 179.97438 * 6 5 4 8 8 C 1.32655 * 120.80834 * 359.97438 * 7 6 5 9 9 C 1.48184 * 119.13966 * 180.02562 * 8 7 6 10 10 C 1.39511 * 120.05686 * 180.23020 * 9 8 7 11 11 C 1.37785 * 119.94023 * 180.22932 * 10 9 8 12 12 C 1.39033 * 120.06122 * 359.51276 * 11 10 9 13 13 O 1.35665 * 119.94755 * 180.25233 * 12 11 10 14 14 C 1.34813 * 116.99811 * 354.47283 * 13 12 11 15 15 H 1.08004 * 120.00044 * 354.68028 * 14 13 12 16 16 C 1.38660 * 119.99975 * 174.68249 * 14 13 12 17 17 N 1.31549 * 120.00057 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00115 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46889 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47253 * 119.99859 * 18 16 14 21 21 H 1.48494 * 109.47285 * 240.00027 * 18 16 14 22 22 C 1.39030 * 120.11049 * 0.27861 * 12 11 10 23 23 C 1.37802 * 120.05846 * 359.95430 * 22 12 11 24 24 N 1.32641 * 121.72058 * 0.27512 * 8 7 6 25 25 C 1.32124 * 120.80666 * 359.44272 * 24 8 7 26 26 C 1.50700 * 120.43744 * 180.25035 * 25 24 8 27 27 H 1.08996 * 109.47158 * 270.00289 * 1 2 3 28 28 H 1.08994 * 109.46818 * 30.00622 * 1 2 3 29 29 H 1.09001 * 109.46902 * 150.00022 * 1 2 3 30 30 H 0.97006 * 119.99887 * 4.31480 * 4 2 1 31 31 H 1.08005 * 120.44349 * 0.02562 * 6 5 4 32 32 H 1.07998 * 120.02844 * 0.02562 * 10 9 8 33 33 H 1.08003 * 119.97395 * 179.79149 * 11 10 9 34 34 H 0.96997 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.08004 * 119.97285 * 179.97438 * 22 12 11 36 36 H 1.07997 * 120.02940 * 180.02562 * 23 22 12 37 37 H 1.09006 * 109.47000 * 270.29267 * 26 25 24 38 38 H 1.08996 * 109.47378 * 30.29554 * 26 25 24 39 39 H 1.08993 * 109.46892 * 150.30029 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5773 -1.1689 0.0915 6 6 4.3206 -0.0666 -0.3261 7 7 5.6372 -0.1035 -0.2248 8 6 6.2511 -1.1716 0.2673 9 6 7.7297 -1.1730 0.3647 10 6 8.3953 -2.2879 0.8747 11 6 9.7700 -2.2848 0.9687 12 6 10.4944 -1.1758 0.5464 13 8 11.8481 -1.1773 0.6352 14 6 12.4203 -2.2343 1.2458 15 1 11.8029 -2.9873 1.7130 16 6 13.8013 -2.3546 1.2741 17 7 14.5533 -1.4377 0.7046 18 14 14.5942 -3.8188 2.1208 19 1 13.5371 -4.6998 2.6792 20 1 15.4051 -4.5802 1.1370 21 1 15.4705 -3.3402 3.2199 22 6 9.8338 -0.0651 0.0337 23 6 8.4588 -0.0613 -0.0580 24 7 5.5763 -2.2402 0.6698 25 6 4.2571 -2.2721 0.6033 26 6 3.4984 -3.4883 1.0682 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6979 -2.0062 -0.0623 31 1 3.8268 0.8065 -0.7265 32 1 7.8334 -3.1515 1.1987 33 1 10.2856 -3.1464 1.3666 34 1 15.5194 -1.5220 0.7240 35 1 10.3987 0.7953 -0.2934 36 1 7.9461 0.8016 -0.4567 37 1 3.3773 -4.1813 0.2355 38 1 4.0516 -3.9771 1.8701 39 1 2.5175 -3.1864 1.4351 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:36 Heat of formation + Delta-G solvation = 13.606356 kcal Electronic energy + Delta-G solvation = -24113.829566 eV Core-core repulsion = 20408.582475 eV Total energy + Delta-G solvation = -3705.247091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40861 -39.81448 -38.92013 -36.63661 -35.54190 -34.16294 -32.53256 -31.93971 -30.33766 -30.02098 -29.17596 -27.45686 -25.53557 -24.19087 -22.98651 -21.80337 -21.14587 -20.65132 -18.50292 -17.96632 -17.62641 -17.25092 -16.56079 -16.23446 -15.69505 -14.95771 -14.60239 -14.46297 -14.34222 -14.21877 -13.71553 -13.47585 -13.40196 -13.22793 -13.16380 -12.85819 -12.76722 -12.61122 -12.44427 -11.75717 -11.63482 -11.43928 -11.21653 -11.02718 -10.84211 -10.64954 -10.49037 -10.46336 -10.19785 -9.45124 -9.07555 -8.92739 -8.50926 -8.20975 -7.09788 -6.56617 -4.11776 0.68105 1.21270 2.05842 2.28593 2.42827 2.62991 3.08516 3.09690 3.15703 3.89024 3.92758 3.99501 4.21645 4.29509 4.43240 4.65307 4.67175 4.83871 4.89488 5.04174 5.09181 5.18358 5.21989 5.24275 5.37460 5.62618 5.73455 5.77507 5.87050 5.91991 6.22364 6.40822 6.54085 6.65260 6.88801 6.89741 6.97788 7.11469 7.29743 7.33918 7.37275 7.66410 7.75808 7.89493 8.36052 8.88534 9.56784 10.60420 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034551 B = 0.002423 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.198972 B =11550.939189 C =12291.184531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.526 6.526 4 N -0.655 5.655 5 C -0.003 4.003 6 C 0.150 3.850 7 N -0.509 5.509 8 C 0.380 3.620 9 C -0.161 4.161 10 C -0.016 4.016 11 C -0.247 4.247 12 C 0.172 3.828 13 O -0.165 6.165 14 C -0.390 4.390 15 H 0.097 0.903 16 C 0.040 3.960 17 N -0.854 5.854 18 Si 0.944 3.056 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.020 4.020 24 N -0.507 5.507 25 C 0.158 3.842 26 C -0.106 4.106 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.411 0.589 31 H 0.189 0.811 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.272 0.728 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.542 -3.621 -0.707 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.402 6.402 4 N -0.301 5.301 5 C -0.102 4.102 6 C -0.019 4.019 7 N -0.224 5.224 8 C 0.120 3.880 9 C -0.164 4.164 10 C -0.036 4.036 11 C -0.266 4.266 12 C 0.115 3.885 13 O -0.066 6.066 14 C -0.466 4.466 15 H 0.114 0.886 16 C -0.166 4.166 17 N -0.487 5.487 18 Si 0.768 3.232 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.223 4.223 23 C -0.040 4.040 24 N -0.222 5.222 25 C 0.007 3.993 26 C -0.163 4.163 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.248 0.752 31 H 0.205 0.795 32 H 0.140 0.860 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.737 -2.643 -0.744 24.889 hybrid contribution -0.853 -1.227 0.336 1.531 sum -25.590 -3.870 -0.408 25.885 Atomic orbital electron populations 1.21878 0.90301 1.05407 1.05277 1.21104 0.91042 0.82978 0.75248 1.90670 1.70008 1.31458 1.48033 1.43375 1.04358 1.10038 1.72333 1.19356 0.84436 0.99482 1.06960 1.23899 0.88686 0.97479 0.91846 1.68537 1.09711 1.27441 1.16685 1.21445 0.94826 0.83510 0.88245 1.17509 0.86164 0.98026 1.14708 1.20849 0.93345 0.96143 0.93305 1.21098 0.93798 1.00492 1.11207 1.19604 0.84712 0.92978 0.91209 1.83959 1.13995 1.42799 1.65824 1.21496 0.90401 1.01764 1.32936 0.88562 1.25379 0.95231 0.98831 0.97147 1.70044 1.05713 1.32856 1.40118 0.85595 0.79326 0.79521 0.78725 1.18887 1.20003 1.20003 1.20156 0.93440 0.98638 1.10111 1.20772 0.92423 0.96492 0.94352 1.68231 1.06616 1.28206 1.19152 1.21439 0.90236 0.94785 0.92859 1.20710 0.98838 0.94016 1.02751 0.88328 0.88289 0.89828 0.75195 0.79505 0.86045 0.85043 0.91773 0.85931 0.85503 0.89776 0.89344 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.51 4.24 7.84 -10.98 -0.09 4.15 16 3 O -0.53 -6.82 14.06 5.56 0.08 -6.74 16 4 N -0.65 -5.08 5.01 -9.64 -0.05 -5.13 16 5 C 0.00 -0.04 6.49 -83.34 -0.54 -0.58 16 6 C 0.15 2.28 10.07 -17.02 -0.17 2.11 16 7 N -0.51 -9.05 9.43 -11.01 -0.10 -9.15 16 8 C 0.38 7.02 7.55 -156.91 -1.18 5.83 16 9 C -0.16 -3.20 5.88 -104.87 -0.62 -3.81 16 10 C -0.02 -0.33 9.55 -39.27 -0.38 -0.70 16 11 C -0.25 -5.43 9.12 -39.45 -0.36 -5.79 16 12 C 0.17 4.15 6.65 -38.99 -0.26 3.90 16 13 O -0.16 -4.63 9.75 0.36 0.00 -4.63 16 14 C -0.39 -10.67 9.44 30.89 0.29 -10.38 16 15 H 0.10 2.43 5.27 -52.48 -0.28 2.16 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.85 -24.52 13.67 55.48 0.76 -23.76 16 18 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.20 -4.43 9.98 -39.45 -0.39 -4.82 16 23 C -0.02 -0.41 9.55 -39.27 -0.38 -0.78 16 24 N -0.51 -8.35 9.37 -7.28 -0.07 -8.42 16 25 C 0.16 2.01 6.84 -82.06 -0.56 1.45 16 26 C -0.11 -0.81 9.70 36.01 0.35 -0.46 16 27 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.07 8.14 -51.93 -0.42 -0.36 16 30 H 0.41 1.59 7.54 -40.82 -0.31 1.28 16 31 H 0.19 2.77 5.59 -52.48 -0.29 2.48 16 32 H 0.12 2.19 7.50 -52.49 -0.39 1.80 16 33 H 0.13 2.84 5.69 -52.48 -0.30 2.54 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.12 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.13 2.32 7.50 -52.49 -0.39 1.92 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.36 7.09 -51.93 -0.37 -0.01 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -34.31 339.89 -7.29 -41.61 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.00 Total: 5.19 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -4.01 Total: -9.13 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.54 Total: -46.46 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.31 -7.29 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.212 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds