Wall clock time and date at job start Tue Mar 31 2020 10:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 120.00320 * 2 1 4 4 N 1.34782 * 119.99790 * 179.97438 * 2 1 3 5 5 C 1.39931 * 119.99670 * 184.30675 * 4 2 1 6 6 C 1.39357 * 120.78738 * 335.01320 * 5 4 2 7 7 N 1.32098 * 119.11401 * 179.97438 * 6 5 4 8 8 C 1.32655 * 120.80834 * 359.97438 * 7 6 5 9 9 C 1.48184 * 119.13966 * 180.02562 * 8 7 6 10 10 C 1.39511 * 120.05686 * 180.23020 * 9 8 7 11 11 C 1.37785 * 119.94023 * 180.22932 * 10 9 8 12 12 C 1.39033 * 120.06122 * 359.51276 * 11 10 9 13 13 O 1.35665 * 119.94755 * 180.25233 * 12 11 10 14 14 C 1.34813 * 116.99811 * 354.47283 * 13 12 11 15 15 H 1.08004 * 120.00044 * 354.68028 * 14 13 12 16 16 C 1.38660 * 119.99975 * 174.68249 * 14 13 12 17 17 N 1.31549 * 120.00057 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00115 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46889 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47253 * 119.99859 * 18 16 14 21 21 H 1.48494 * 109.47285 * 240.00027 * 18 16 14 22 22 C 1.39030 * 120.11049 * 0.27861 * 12 11 10 23 23 C 1.37802 * 120.05846 * 359.95430 * 22 12 11 24 24 N 1.32641 * 121.72058 * 0.27512 * 8 7 6 25 25 C 1.32124 * 120.80666 * 359.44272 * 24 8 7 26 26 C 1.50700 * 120.43744 * 180.25035 * 25 24 8 27 27 H 1.08996 * 109.47158 * 270.00289 * 1 2 3 28 28 H 1.08994 * 109.46818 * 30.00622 * 1 2 3 29 29 H 1.09001 * 109.46902 * 150.00022 * 1 2 3 30 30 H 0.97006 * 119.99887 * 4.31480 * 4 2 1 31 31 H 1.08005 * 120.44349 * 0.02562 * 6 5 4 32 32 H 1.07998 * 120.02844 * 0.02562 * 10 9 8 33 33 H 1.08003 * 119.97395 * 179.79149 * 11 10 9 34 34 H 0.96997 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.08004 * 119.97285 * 179.97438 * 22 12 11 36 36 H 1.07997 * 120.02940 * 180.02562 * 23 22 12 37 37 H 1.09006 * 109.47000 * 270.29267 * 26 25 24 38 38 H 1.08996 * 109.47378 * 30.29554 * 26 25 24 39 39 H 1.08993 * 109.46892 * 150.30029 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5773 -1.1689 0.0915 6 6 4.3206 -0.0666 -0.3261 7 7 5.6372 -0.1035 -0.2248 8 6 6.2511 -1.1716 0.2673 9 6 7.7297 -1.1730 0.3647 10 6 8.3953 -2.2879 0.8747 11 6 9.7700 -2.2848 0.9687 12 6 10.4944 -1.1758 0.5464 13 8 11.8481 -1.1773 0.6352 14 6 12.4203 -2.2343 1.2458 15 1 11.8029 -2.9873 1.7130 16 6 13.8013 -2.3546 1.2741 17 7 14.5533 -1.4377 0.7046 18 14 14.5942 -3.8188 2.1208 19 1 13.5371 -4.6998 2.6792 20 1 15.4051 -4.5802 1.1370 21 1 15.4705 -3.3402 3.2199 22 6 9.8338 -0.0651 0.0337 23 6 8.4588 -0.0613 -0.0580 24 7 5.5763 -2.2402 0.6698 25 6 4.2571 -2.2721 0.6033 26 6 3.4984 -3.4883 1.0682 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6979 -2.0062 -0.0623 31 1 3.8268 0.8065 -0.7265 32 1 7.8334 -3.1515 1.1987 33 1 10.2856 -3.1464 1.3666 34 1 15.5194 -1.5220 0.7240 35 1 10.3987 0.7953 -0.2934 36 1 7.9461 0.8016 -0.4567 37 1 3.3773 -4.1813 0.2355 38 1 4.0516 -3.9771 1.8701 39 1 2.5175 -3.1864 1.4351 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590724.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:35 Heat of formation + Delta-G solvation = -10.064875 kcal Electronic energy + Delta-G solvation = -24114.856027 eV Core-core repulsion = 20408.582475 eV Total energy + Delta-G solvation = -3706.273552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48985 -40.94658 -40.50207 -38.29729 -36.58523 -35.27799 -34.39279 -33.06217 -31.92100 -30.96078 -30.26513 -28.56594 -27.42760 -25.38284 -24.31753 -23.34260 -22.36391 -21.84003 -19.94903 -19.30879 -18.98999 -18.57869 -17.71499 -17.44094 -16.56869 -16.35851 -16.09757 -15.98524 -15.60744 -15.58246 -15.18371 -14.99478 -14.55633 -14.42167 -14.05298 -14.02345 -13.57288 -13.46331 -13.31696 -13.21167 -13.04758 -12.89102 -12.67120 -12.44452 -12.30949 -12.12653 -12.08185 -11.62331 -11.28362 -11.09779 -10.86488 -10.21637 -9.89627 -9.74454 -8.72207 -8.51337 -6.18098 -0.57511 0.06618 0.56389 0.71308 1.36845 1.43883 1.51104 1.55634 1.90479 2.16295 2.56215 2.80148 2.93190 3.12119 3.21010 3.37830 3.39628 3.64229 3.88068 4.07204 4.11504 4.18957 4.45140 4.53434 4.55797 4.61847 4.68284 4.70455 4.78570 4.79640 4.94214 5.09675 5.11897 5.17282 5.22916 5.39627 5.54438 5.61074 5.65003 5.97439 5.97681 6.09665 6.29363 6.92693 6.99322 7.10023 7.68624 8.71180 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.034551 B = 0.002423 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.198972 B =11550.939189 C =12291.184531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.504 3.496 3 O -0.575 6.575 4 N -0.638 5.638 5 C 0.027 3.973 6 C 0.123 3.877 7 N -0.527 5.527 8 C 0.349 3.651 9 C -0.144 4.144 10 C -0.015 4.015 11 C -0.246 4.246 12 C 0.140 3.860 13 O -0.217 6.217 14 C -0.415 4.415 15 H 0.107 0.893 16 C -0.021 4.021 17 N -0.915 5.915 18 Si 1.021 2.979 19 H -0.249 1.249 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.208 4.208 23 C -0.020 4.020 24 N -0.515 5.515 25 C 0.152 3.848 26 C -0.103 4.103 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.435 0.565 31 H 0.188 0.812 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.275 0.725 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.666 -5.976 -0.061 32.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.295 3.705 3 O -0.454 6.454 4 N -0.286 5.286 5 C -0.074 4.074 6 C -0.045 4.045 7 N -0.242 5.242 8 C 0.086 3.914 9 C -0.147 4.147 10 C -0.034 4.034 11 C -0.265 4.265 12 C 0.087 3.913 13 O -0.122 6.122 14 C -0.491 4.491 15 H 0.125 0.875 16 C -0.219 4.219 17 N -0.551 5.551 18 Si 0.840 3.160 19 H -0.172 1.172 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.227 4.227 23 C -0.040 4.040 24 N -0.230 5.230 25 C 0.001 3.999 26 C -0.160 4.160 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.277 0.723 31 H 0.204 0.796 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -30.000 -5.021 -0.109 30.417 hybrid contribution 0.017 -0.389 0.050 0.392 sum -29.983 -5.409 -0.059 30.467 Atomic orbital electron populations 1.21940 0.85658 1.07200 1.06936 1.22168 0.93035 0.81964 0.73312 1.90664 1.71346 1.33336 1.50009 1.43435 1.02268 1.11544 1.71372 1.19417 0.86640 0.97876 1.03439 1.24025 0.88191 0.98943 0.93317 1.68397 1.11294 1.27580 1.16887 1.21111 0.94132 0.84957 0.91207 1.17843 0.87799 0.97296 1.11757 1.21008 0.92400 0.96998 0.93014 1.21194 0.94667 0.99864 1.10783 1.20035 0.84163 0.94518 0.92566 1.83940 1.15628 1.44067 1.68543 1.21958 0.91192 1.02083 1.33836 0.87549 1.26666 0.95457 1.02010 0.97768 1.70183 1.06064 1.35699 1.43199 0.84491 0.78375 0.75547 0.77570 1.17201 1.19258 1.19342 1.20338 0.94290 0.98266 1.09824 1.20926 0.91562 0.97328 0.94158 1.68204 1.08608 1.27323 1.18886 1.22286 0.89197 0.96545 0.91882 1.20929 0.99527 0.92031 1.03526 0.86480 0.88334 0.86253 0.72339 0.79569 0.83755 0.84971 0.91588 0.85716 0.83932 0.87297 0.89581 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 10.31 71.24 0.73 0.44 16 2 C 0.50 6.61 7.84 87.66 0.69 7.30 16 3 O -0.57 -13.92 14.06 -3.04 -0.04 -13.96 16 4 N -0.64 -7.05 5.01 -302.78 -1.52 -8.57 16 5 C 0.03 0.58 6.49 38.38 0.25 0.83 16 6 C 0.12 3.58 10.07 84.92 0.86 4.44 16 7 N -0.53 -18.42 9.43 -188.74 -1.78 -20.20 16 8 C 0.35 12.54 7.55 137.46 1.04 13.58 16 9 C -0.14 -5.71 5.88 -20.02 -0.12 -5.83 16 10 C -0.01 -0.57 9.55 22.47 0.21 -0.36 16 11 C -0.25 -11.13 9.12 22.35 0.20 -10.93 16 12 C 0.14 7.16 6.65 22.65 0.15 7.31 16 13 O -0.22 -13.07 9.75 -21.63 -0.21 -13.28 16 14 C -0.42 -23.94 9.44 67.92 0.64 -23.30 16 15 H 0.11 5.61 5.27 -2.91 -0.02 5.59 16 16 C -0.02 -1.15 5.49 84.84 0.47 -0.69 16 17 N -0.91 -55.65 13.67 21.61 0.30 -55.35 16 18 Si 1.02 42.30 29.55 68.60 2.03 44.33 16 19 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 22 C -0.21 -9.46 9.98 22.36 0.22 -9.24 16 23 C -0.02 -0.81 9.55 22.47 0.21 -0.60 16 24 N -0.52 -15.82 9.37 -176.94 -1.66 -17.48 16 25 C 0.15 3.33 6.84 42.78 0.29 3.62 16 26 C -0.10 -1.05 9.70 71.24 0.69 -0.36 16 27 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.44 0.73 7.54 -92.70 -0.70 0.03 16 31 H 0.19 5.44 5.59 -2.91 -0.02 5.43 16 32 H 0.14 5.00 7.50 -2.91 -0.02 4.98 16 33 H 0.13 5.88 5.69 -2.91 -0.02 5.86 16 34 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.12 5.48 8.06 -2.91 -0.02 5.46 16 36 H 0.14 5.27 7.50 -2.91 -0.02 5.25 16 37 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.11 0.36 7.09 -2.39 -0.02 0.34 16 Total: -1.00 -82.43 339.89 4.08 -78.35 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.42 Total: 19.96 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 6.54 Total: -13.79 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -4.66 Total: -101.61 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.25 Total: -27.24 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -82.43 4.08 -78.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590724.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.283 kcal (2) G-P(sol) polarization free energy of solvation -82.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds