Wall clock time and date at job start Tue Mar 31 2020 11:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47128 * 71.23806 * 3 2 1 5 5 C 1.36875 * 119.99880 * 277.81291 * 4 3 2 6 6 H 1.08009 * 120.00009 * 53.17024 * 5 4 3 7 7 C 1.39047 * 120.00048 * 233.17215 * 5 4 3 8 8 N 1.31359 * 120.00032 * 40.85475 * 7 5 4 9 9 Si 1.86802 * 119.99914 * 220.84993 * 7 5 4 10 10 H 1.48492 * 109.47169 * 90.00283 * 9 7 5 11 11 H 1.48500 * 109.46754 * 210.00232 * 9 7 5 12 12 H 1.48498 * 109.46892 * 329.99976 * 9 7 5 13 13 C 1.34768 * 120.00365 * 97.81337 * 4 3 2 14 14 O 1.21596 * 120.00258 * 185.95029 * 13 4 3 15 15 C 1.47745 * 119.99877 * 5.95686 * 13 4 3 16 16 C 1.39688 * 120.11725 * 318.10053 * 15 13 4 17 17 C 1.37956 * 119.99071 * 180.02562 * 16 15 13 18 18 C 1.38276 * 120.22669 * 359.75158 * 17 16 15 19 19 C 1.38961 * 120.23398 * 0.50908 * 18 17 16 20 20 N 1.39975 * 119.99252 * 179.76920 * 19 18 17 21 21 C 1.47051 * 125.41145 * 353.60990 * 20 19 18 22 22 C 1.54101 * 103.86394 * 179.87146 * 21 20 19 23 23 N 1.47060 * 103.86207 * 0.38049 * 22 21 20 24 24 C 1.33948 * 125.40856 * 173.92242 * 20 19 18 25 25 O 1.21585 * 123.04385 * 0.02562 * 24 20 19 26 26 C 1.38607 * 120.01156 * 359.48779 * 19 18 17 27 27 H 4.40638 * 5.51509 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.46714 * 311.23652 * 3 2 1 29 29 H 1.09003 * 109.46889 * 191.23578 * 3 2 1 30 30 H 0.97000 * 120.00083 * 184.98449 * 8 7 5 31 31 H 1.08005 * 120.00218 * 0.02562 * 16 15 13 32 32 H 1.07994 * 119.88249 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.88041 * 180.25847 * 18 17 16 34 34 H 1.08993 * 110.55103 * 298.60341 * 21 20 19 35 35 H 1.09006 * 110.54694 * 61.41462 * 21 20 19 36 36 H 1.09001 * 110.76500 * 241.68311 * 22 21 20 37 37 H 1.09003 * 110.46765 * 118.92883 * 22 21 20 38 38 H 0.96996 * 125.41140 * 179.75432 * 23 22 21 39 39 H 1.07994 * 120.11509 * 180.23125 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4434 -1.3078 5 6 3.2114 -1.7801 -1.5919 6 1 2.3446 -2.4109 -1.4600 7 6 4.4053 -2.3260 -2.0502 8 7 5.5466 -1.9458 -1.5226 9 14 4.3861 -3.6002 -3.4160 10 1 4.4817 -2.9175 -4.7312 11 1 5.5400 -4.5202 -3.2508 12 1 3.1214 -4.3758 -3.3517 13 6 3.5084 0.4643 -2.2312 14 8 3.8106 0.1023 -3.3520 15 6 3.5511 1.8991 -1.8817 16 6 2.5299 2.4643 -1.1143 17 6 2.5721 3.8045 -0.7899 18 6 3.6257 4.5914 -1.2175 19 6 4.6439 4.0401 -1.9859 20 7 5.7055 4.8424 -2.4201 21 6 5.7978 6.2999 -2.2483 22 6 7.1481 6.6633 -2.8960 23 7 7.6689 5.3731 -3.3723 24 6 6.7961 4.4052 -3.0634 25 8 6.9771 3.2356 -3.3422 26 6 4.6114 2.6947 -2.3175 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.6766 0.7728 29 1 3.0089 1.0088 0.2002 30 1 6.3831 -2.2715 -1.8900 31 1 1.7073 1.8521 -0.7751 32 1 1.7818 4.2396 -0.1962 33 1 3.6552 5.6390 -0.9568 34 1 4.9773 6.7986 -2.7640 35 1 5.8009 6.5609 -1.1900 36 1 7.8238 7.1009 -2.1611 37 1 6.9983 7.3472 -3.7314 38 1 8.5108 5.2437 -3.8363 39 1 5.4037 2.2637 -2.9114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256522297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:33 Heat of formation + Delta-G solvation = 74.193418 kcal Electronic energy + Delta-G solvation = -25704.740515 eV Core-core repulsion = 22002.120676 eV Total energy + Delta-G solvation = -3702.619838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48425 -39.36392 -37.53112 -36.54246 -34.94171 -34.21758 -32.68702 -31.37044 -30.53929 -29.83769 -28.73828 -26.46801 -25.06832 -23.70217 -23.29077 -21.99985 -20.56307 -19.46268 -18.02012 -17.88904 -17.04855 -16.87344 -16.35379 -16.12130 -15.45363 -14.92557 -14.85975 -14.42846 -14.22548 -14.06220 -13.98115 -13.49629 -13.33718 -13.27020 -12.83107 -12.66957 -12.49778 -12.16424 -12.03470 -11.62649 -11.30034 -10.99873 -10.95437 -10.58765 -10.19617 -10.12459 -9.88683 -9.75237 -9.53233 -9.37031 -8.59051 -8.46750 -8.23585 -7.66314 -7.39562 -6.29130 -3.93680 1.44123 1.71519 2.32105 3.07176 3.29991 3.37632 3.40076 3.50971 3.60542 3.62727 3.87168 4.02159 4.27858 4.51523 4.58727 4.66364 4.87976 5.01303 5.06768 5.07868 5.20106 5.25847 5.31939 5.42144 5.66282 5.76806 5.89098 5.96756 6.13204 6.33800 6.49175 6.54082 6.59617 6.69543 6.75107 6.85749 7.06708 7.31616 7.46309 7.64187 8.17095 8.28225 8.46880 8.95311 9.07444 9.50868 10.13277 10.72052 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004818 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.115875 B = 5810.237957 C = 7446.748311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C 0.182 3.818 4 N -0.430 5.430 5 C -0.371 4.371 6 H 0.080 0.920 7 C 0.100 3.900 8 N -0.816 5.816 9 Si 0.892 3.108 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.270 1.270 13 C 0.522 3.478 14 O -0.545 6.545 15 C -0.072 4.072 16 C -0.132 4.132 17 C -0.102 4.102 18 C -0.156 4.156 19 C 0.174 3.826 20 N -0.570 5.570 21 C 0.087 3.913 22 C 0.094 3.906 23 N -0.740 5.740 24 C 0.693 3.307 25 O -0.550 6.550 26 C -0.106 4.106 27 H 0.211 0.789 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.269 0.731 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.432 0.568 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 20.921 3.360 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.167 4.167 3 C 0.059 3.941 4 N -0.150 5.150 5 C -0.496 4.496 6 H 0.098 0.902 7 C -0.114 4.114 8 N -0.446 5.446 9 Si 0.717 3.283 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.195 1.195 13 C 0.310 3.690 14 O -0.425 6.425 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.177 4.177 19 C 0.081 3.919 20 N -0.297 5.297 21 C -0.036 4.036 22 C -0.032 4.032 23 N -0.404 5.404 24 C 0.393 3.607 25 O -0.425 6.425 26 C -0.127 4.127 27 H 0.228 0.772 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.274 0.726 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.173 19.993 2.741 20.181 hybrid contribution 0.296 -0.286 -0.704 0.816 sum 0.469 19.707 2.037 19.817 Atomic orbital electron populations 1.24713 0.95687 1.03045 1.01881 1.24110 0.95316 0.98277 0.98963 1.19123 0.82904 1.01311 0.90741 1.43062 1.57871 1.05538 1.08499 1.18688 0.96205 0.82869 1.51829 0.90192 1.25259 0.94494 0.96316 0.95318 1.70219 0.98621 1.42673 1.33103 0.86572 0.77459 0.79940 0.84351 1.19466 1.21682 1.19466 1.18147 0.81684 0.83782 0.85339 1.90639 1.50897 1.80156 1.20789 1.20363 0.94594 0.95844 0.96779 1.21823 0.99494 0.95448 0.98393 1.20753 0.97644 0.93409 1.00213 1.20627 0.95312 0.99917 1.01860 1.17268 0.87200 0.89911 0.97488 1.44435 1.19127 1.07788 1.58389 1.22514 0.97960 0.80577 1.02551 1.22354 0.94085 0.87175 0.99536 1.45084 1.23939 1.07215 1.64111 1.15941 0.80487 0.85126 0.79102 1.91000 1.77476 1.15337 1.58701 1.21697 0.99839 0.91043 1.00105 0.77237 0.88922 0.89044 0.92102 0.84436 0.85564 0.86122 0.89225 0.89244 0.89660 0.89716 0.72580 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.92 19.25 29.55 0.57 -3.35 16 2 C -0.17 -3.21 11.22 -37.12 -0.42 -3.63 16 3 C 0.18 3.91 5.39 -6.83 -0.04 3.87 16 4 N -0.43 -11.45 2.48 -119.04 -0.30 -11.74 16 5 C -0.37 -10.77 8.69 -15.00 -0.13 -10.90 16 6 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 7 C 0.10 2.95 4.12 -17.45 -0.07 2.88 16 8 N -0.82 -24.61 13.87 55.50 0.77 -23.84 16 9 Si 0.89 23.19 29.69 -169.99 -5.05 18.14 16 10 H -0.27 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 13 C 0.52 14.35 7.06 -12.38 -0.09 14.26 16 14 O -0.54 -17.15 16.14 5.28 0.09 -17.07 16 15 C -0.07 -1.61 5.22 -104.99 -0.55 -2.16 16 16 C -0.13 -2.39 7.37 -39.14 -0.29 -2.68 16 17 C -0.10 -1.44 10.02 -39.67 -0.40 -1.84 16 18 C -0.16 -2.12 9.49 -39.30 -0.37 -2.49 16 19 C 0.17 2.95 6.61 -83.73 -0.55 2.40 16 20 N -0.57 -8.09 3.16 -118.29 -0.37 -8.46 16 21 C 0.09 0.67 6.48 -3.17 -0.02 0.65 16 22 C 0.09 0.55 8.06 -3.16 -0.03 0.53 16 23 N -0.74 -7.61 6.37 -64.70 -0.41 -8.03 16 24 C 0.69 11.15 8.52 -88.40 -0.75 10.39 16 25 O -0.55 -11.98 14.75 5.29 0.08 -11.90 16 26 C -0.11 -2.32 8.90 -38.96 -0.35 -2.66 16 27 H 0.21 2.59 7.80 -54.10 -0.42 2.16 16 28 H 0.09 1.98 8.10 -51.93 -0.42 1.56 16 29 H 0.09 1.79 4.86 -51.93 -0.25 1.54 16 30 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.14 2.47 4.22 -52.48 -0.22 2.25 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.16 7.27 -52.49 -0.38 0.78 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.43 3.63 8.96 -40.82 -0.37 3.27 16 39 H 0.16 4.18 5.27 -52.49 -0.28 3.91 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -39.45 337.64 -7.60 -47.05 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.01 Total: 5.49 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.48 Total: 5.27 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.31 Total: -52.07 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: 0.16 Total: -28.97 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.05 Total: 18.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -39.45 -7.60 -47.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256522297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.244 kcal (2) G-P(sol) polarization free energy of solvation -39.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds