Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47128 * 71.23806 * 3 2 1 5 5 C 1.36875 * 119.99880 * 277.81291 * 4 3 2 6 6 H 1.08009 * 120.00009 * 53.17024 * 5 4 3 7 7 C 1.39047 * 120.00048 * 233.17215 * 5 4 3 8 8 N 1.31359 * 120.00032 * 40.85475 * 7 5 4 9 9 Si 1.86802 * 119.99914 * 220.84993 * 7 5 4 10 10 H 1.48492 * 109.47169 * 90.00283 * 9 7 5 11 11 H 1.48500 * 109.46754 * 210.00232 * 9 7 5 12 12 H 1.48498 * 109.46892 * 329.99976 * 9 7 5 13 13 C 1.34768 * 120.00365 * 97.81337 * 4 3 2 14 14 O 1.21596 * 120.00258 * 185.95029 * 13 4 3 15 15 C 1.47745 * 119.99877 * 5.95686 * 13 4 3 16 16 C 1.39688 * 120.11725 * 318.10053 * 15 13 4 17 17 C 1.37956 * 119.99071 * 180.02562 * 16 15 13 18 18 C 1.38276 * 120.22669 * 359.75158 * 17 16 15 19 19 C 1.38961 * 120.23398 * 0.50908 * 18 17 16 20 20 N 1.39975 * 119.99252 * 179.76920 * 19 18 17 21 21 C 1.47051 * 125.41145 * 353.60990 * 20 19 18 22 22 C 1.54101 * 103.86394 * 179.87146 * 21 20 19 23 23 N 1.47060 * 103.86207 * 0.38049 * 22 21 20 24 24 C 1.33948 * 125.40856 * 173.92242 * 20 19 18 25 25 O 1.21585 * 123.04385 * 0.02562 * 24 20 19 26 26 C 1.38607 * 120.01156 * 359.48779 * 19 18 17 27 27 H 4.40638 * 5.51509 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.46714 * 311.23652 * 3 2 1 29 29 H 1.09003 * 109.46889 * 191.23578 * 3 2 1 30 30 H 0.97000 * 120.00083 * 184.98449 * 8 7 5 31 31 H 1.08005 * 120.00218 * 0.02562 * 16 15 13 32 32 H 1.07994 * 119.88249 * 180.02562 * 17 16 15 33 33 H 1.07997 * 119.88041 * 180.25847 * 18 17 16 34 34 H 1.08993 * 110.55103 * 298.60341 * 21 20 19 35 35 H 1.09006 * 110.54694 * 61.41462 * 21 20 19 36 36 H 1.09001 * 110.76500 * 241.68311 * 22 21 20 37 37 H 1.09003 * 110.46765 * 118.92883 * 22 21 20 38 38 H 0.96996 * 125.41140 * 179.75432 * 23 22 21 39 39 H 1.07994 * 120.11509 * 180.23125 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4434 -1.3078 5 6 3.2114 -1.7801 -1.5919 6 1 2.3446 -2.4109 -1.4600 7 6 4.4053 -2.3260 -2.0502 8 7 5.5466 -1.9458 -1.5226 9 14 4.3861 -3.6002 -3.4160 10 1 4.4817 -2.9175 -4.7312 11 1 5.5400 -4.5202 -3.2508 12 1 3.1214 -4.3758 -3.3517 13 6 3.5084 0.4643 -2.2312 14 8 3.8106 0.1023 -3.3520 15 6 3.5511 1.8991 -1.8817 16 6 2.5299 2.4643 -1.1143 17 6 2.5721 3.8045 -0.7899 18 6 3.6257 4.5914 -1.2175 19 6 4.6439 4.0401 -1.9859 20 7 5.7055 4.8424 -2.4201 21 6 5.7978 6.2999 -2.2483 22 6 7.1481 6.6633 -2.8960 23 7 7.6689 5.3731 -3.3723 24 6 6.7961 4.4052 -3.0634 25 8 6.9771 3.2356 -3.3422 26 6 4.6114 2.6947 -2.3175 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.6766 0.7728 29 1 3.0089 1.0088 0.2002 30 1 6.3831 -2.2715 -1.8900 31 1 1.7073 1.8521 -0.7751 32 1 1.7818 4.2396 -0.1962 33 1 3.6552 5.6390 -0.9568 34 1 4.9773 6.7986 -2.7640 35 1 5.8009 6.5609 -1.1900 36 1 7.8238 7.1009 -2.1611 37 1 6.9983 7.3472 -3.7314 38 1 8.5108 5.2437 -3.8363 39 1 5.4037 2.2637 -2.9114 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256522297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = 43.415325 kcal Electronic energy + Delta-G solvation = -25706.075153 eV Core-core repulsion = 22002.120676 eV Total energy + Delta-G solvation = -3703.954477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52887 -41.04511 -39.12891 -37.73536 -36.89678 -35.41276 -34.56697 -33.14906 -32.00028 -30.96384 -29.65820 -28.27669 -26.95150 -24.80314 -24.56302 -23.33113 -21.81794 -21.14008 -19.57107 -19.22929 -18.41475 -17.77551 -17.71166 -17.67487 -17.14817 -16.76723 -16.33339 -15.99747 -15.80440 -15.38036 -14.93840 -14.90596 -14.74779 -14.45110 -14.40212 -14.14033 -13.92886 -13.70705 -13.30592 -13.15527 -12.97838 -12.75819 -12.70145 -12.41211 -12.19115 -11.49917 -11.29144 -11.14475 -10.99834 -10.67656 -10.44990 -10.23166 -9.88870 -9.55403 -8.86066 -8.52303 -6.20803 0.05213 0.35230 1.23872 1.33774 1.40373 1.42323 1.81707 1.86483 1.95105 2.07273 2.36299 2.75532 2.88840 2.97458 3.18740 3.47226 3.66015 3.77660 3.97237 4.15707 4.19111 4.22771 4.32351 4.47424 4.49694 4.58209 4.67797 4.77991 4.88399 4.92769 4.99957 5.18478 5.34573 5.37317 5.39343 5.53515 5.54650 6.00054 6.08302 6.09736 6.40277 6.75373 6.81947 6.94997 7.36207 7.36613 8.02367 8.47953 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004818 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.115875 B = 5810.237957 C = 7446.748311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.227 4.227 3 C 0.190 3.810 4 N -0.442 5.442 5 C -0.388 4.388 6 H 0.077 0.923 7 C 0.057 3.943 8 N -0.852 5.852 9 Si 0.942 3.058 10 H -0.298 1.298 11 H -0.271 1.271 12 H -0.247 1.247 13 C 0.508 3.492 14 O -0.610 6.610 15 C -0.106 4.106 16 C -0.136 4.136 17 C -0.078 4.078 18 C -0.124 4.124 19 C 0.176 3.824 20 N -0.573 5.573 21 C 0.076 3.924 22 C 0.093 3.907 23 N -0.727 5.727 24 C 0.674 3.326 25 O -0.627 6.627 26 C -0.147 4.147 27 H 0.258 0.742 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.268 0.732 31 H 0.140 0.860 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.438 0.562 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 25.707 5.450 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.228 4.228 3 C 0.068 3.932 4 N -0.161 5.161 5 C -0.514 4.514 6 H 0.094 0.906 7 C -0.153 4.153 8 N -0.484 5.484 9 Si 0.766 3.234 10 H -0.225 1.225 11 H -0.196 1.196 12 H -0.170 1.170 13 C 0.298 3.702 14 O -0.495 6.495 15 C -0.109 4.109 16 C -0.155 4.155 17 C -0.096 4.096 18 C -0.145 4.145 19 C 0.082 3.918 20 N -0.300 5.300 21 C -0.044 4.044 22 C -0.030 4.030 23 N -0.389 5.389 24 C 0.374 3.626 25 O -0.508 6.508 26 C -0.168 4.168 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.200 0.800 33 H 0.200 0.800 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.281 0.719 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.362 24.853 4.890 25.439 hybrid contribution 1.006 -1.549 -1.316 2.268 sum -1.356 23.304 3.574 23.615 Atomic orbital electron populations 1.25696 0.96350 0.99481 0.98036 1.23742 0.95186 1.01553 1.02352 1.18985 0.84942 1.01744 0.87529 1.43243 1.57648 1.04850 1.10363 1.18864 0.95934 0.84171 1.52400 0.90563 1.26014 0.94353 0.98292 0.96676 1.70250 0.99010 1.44824 1.34328 0.85777 0.79131 0.78264 0.80244 1.22482 1.19646 1.17034 1.19085 0.80137 0.86328 0.84629 1.90554 1.53624 1.81907 1.23404 1.19978 0.97414 0.92945 1.00612 1.21870 0.98090 0.97645 0.97895 1.21352 0.98574 0.91196 0.98492 1.21246 0.92572 1.02412 0.98231 1.17385 0.88855 0.88280 0.97306 1.44583 1.17637 1.10397 1.57389 1.23129 0.99834 0.76180 1.05224 1.22810 0.93706 0.85097 1.01411 1.45111 1.23079 1.07927 1.62749 1.16507 0.81862 0.84933 0.79295 1.90967 1.79188 1.19023 1.61585 1.21370 0.99263 0.94107 1.02097 0.72581 0.90051 0.87434 0.92247 0.84262 0.80028 0.80025 0.86510 0.86120 0.86439 0.86633 0.71871 0.87363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.35 19.25 74.32 1.43 -3.91 16 2 C -0.23 -8.64 11.22 31.13 0.35 -8.29 16 3 C 0.19 8.48 5.39 84.57 0.46 8.93 16 4 N -0.44 -25.10 2.48 -648.81 -1.61 -26.71 16 5 C -0.39 -23.91 8.69 84.10 0.73 -23.18 16 6 H 0.08 4.60 8.06 -2.91 -0.02 4.58 16 7 C 0.06 3.57 4.12 84.96 0.35 3.92 16 8 N -0.85 -55.17 13.87 21.68 0.30 -54.87 16 9 Si 0.94 50.34 29.69 68.60 2.04 52.38 16 10 H -0.30 -17.19 7.11 99.48 0.71 -16.48 16 11 H -0.27 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.25 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.51 30.24 7.06 86.76 0.61 30.85 16 14 O -0.61 -42.32 16.14 -4.02 -0.06 -42.39 16 15 C -0.11 -5.04 5.22 -20.10 -0.10 -5.15 16 16 C -0.14 -4.76 7.37 22.55 0.17 -4.60 16 17 C -0.08 -1.82 10.02 22.21 0.22 -1.60 16 18 C -0.12 -2.72 9.49 22.45 0.21 -2.51 16 19 C 0.18 5.81 6.61 38.10 0.25 6.06 16 20 N -0.57 -15.44 3.16 -646.88 -2.04 -17.49 16 21 C 0.08 0.78 6.48 86.65 0.56 1.34 16 22 C 0.09 0.67 8.06 86.65 0.70 1.37 16 23 N -0.73 -14.20 6.37 -477.33 -3.04 -17.24 16 24 C 0.67 22.48 8.52 179.57 1.53 24.01 16 25 O -0.63 -30.38 14.75 -3.98 -0.06 -30.44 16 26 C -0.15 -6.92 8.90 22.67 0.20 -6.72 16 27 H 0.26 4.86 7.80 -4.42 -0.03 4.83 16 28 H 0.08 3.69 8.10 -2.39 -0.02 3.67 16 29 H 0.11 4.34 4.86 -2.39 -0.01 4.33 16 30 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 31 H 0.14 4.81 4.22 -2.91 -0.01 4.80 16 32 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.18 1.86 7.27 -2.91 -0.02 1.84 16 34 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.54 8.10 -2.38 -0.02 0.52 16 36 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.44 7.25 8.96 -92.71 -0.83 6.42 16 39 H 0.11 6.35 5.27 -2.91 -0.02 6.33 16 Total: -1.00 -103.90 337.64 3.47 -100.43 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.28 Total: 15.78 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 7.67 Total: 20.54 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.39 Total: -116.30 kcal Atomic # 8 Polarization: -72.70 SS G_CDS: -0.12 Total: -72.83 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.04 Total: 52.38 kcal Total: -103.90 3.47 -100.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256522297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.849 kcal (2) G-P(sol) polarization free energy of solvation -103.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds