Wall clock time and date at job start Tue Mar 31 2020 10:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38212 * 120.37282 * 2 1 4 4 C 1.39496 * 118.45726 * 180.28060 * 3 2 1 5 5 N 1.39033 * 120.49047 * 179.73271 * 4 3 2 6 6 C 1.34774 * 120.00381 * 174.38707 * 5 4 3 7 7 O 1.21270 * 119.99732 * 5.04861 * 6 5 4 8 8 C 1.50698 * 120.00436 * 185.04489 * 6 5 4 9 9 H 1.09005 * 109.47457 * 60.00398 * 8 6 5 10 10 C 1.50701 * 109.47198 * 300.00368 * 8 6 5 11 11 H 1.07999 * 119.99923 * 332.92762 * 10 8 6 12 12 C 1.37877 * 120.00051 * 152.93032 * 10 8 6 13 13 N 1.31513 * 120.00145 * 5.05920 * 12 10 8 14 14 Si 1.86802 * 120.00052 * 185.05496 * 12 10 8 15 15 H 1.48500 * 109.46953 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47044 * 120.00143 * 14 12 10 17 17 H 1.48497 * 109.47445 * 240.00327 * 14 12 10 18 18 C 1.50699 * 109.47290 * 180.02562 * 8 6 5 19 19 C 1.38235 * 120.00309 * 246.93566 * 18 8 6 20 20 C 1.38231 * 120.00400 * 179.97438 * 19 18 8 21 21 C 1.38235 * 120.00002 * 359.97040 * 20 19 18 22 22 C 1.38230 * 119.99811 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00312 * 0.08709 * 22 21 20 24 24 N 1.32879 * 119.02397 * 359.47225 * 4 3 2 25 25 C 1.32264 * 120.64993 * 0.26347 * 24 4 3 26 26 O 1.35452 * 119.15654 * 180.02562 * 25 24 4 27 27 N 1.32328 * 121.68202 * 0.02562 * 25 24 4 28 28 H 1.09002 * 109.47298 * 270.25493 * 1 2 3 29 29 H 1.09001 * 109.46846 * 30.25758 * 1 2 3 30 30 H 1.09003 * 109.47522 * 150.25338 * 1 2 3 31 31 H 1.08002 * 120.77671 * 0.04723 * 3 2 1 32 32 H 0.97007 * 120.00243 * 354.39687 * 5 4 3 33 33 H 0.96999 * 119.99977 * 180.02562 * 13 12 10 34 34 H 1.08003 * 119.99889 * 359.97438 * 19 18 8 35 35 H 1.07999 * 120.00303 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00238 * 179.72386 * 21 20 19 37 37 H 1.08008 * 120.00409 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.00286 * 179.97438 * 23 22 21 39 39 H 0.96701 * 113.99821 * 90.01181 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1924 0.0000 4 6 3.6000 1.1458 -0.0060 5 7 4.3451 2.3196 -0.0118 6 6 5.6874 2.2664 0.0966 7 8 6.2528 1.1936 0.1070 8 6 6.4858 3.5399 0.2047 9 1 6.1718 4.0915 1.0910 10 6 6.2528 4.3846 -1.0214 11 1 5.9843 3.9162 -1.9567 12 6 6.3823 5.7554 -0.9490 13 7 6.8055 6.3181 0.1618 14 14 5.9570 6.8132 -2.4287 15 1 5.5077 5.9440 -3.5458 16 1 4.8680 7.7557 -2.0667 17 1 7.1564 7.5807 -2.8498 18 6 7.9514 3.2063 0.3132 19 6 8.6363 3.4734 1.4839 20 6 9.9805 3.1670 1.5836 21 6 10.6398 2.5928 0.5128 22 6 9.9550 2.3257 -0.6578 23 6 8.6112 2.6343 -0.7584 24 7 4.2055 -0.0370 -0.0008 25 6 3.4999 -1.1557 0.0047 26 8 4.1484 -2.3449 0.0105 27 7 2.1767 -1.1428 0.0047 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6847 2.1384 0.0008 32 1 3.8988 3.1770 -0.0938 33 1 6.8962 7.2825 0.2128 34 1 8.1211 3.9215 2.3207 35 1 10.5155 3.3752 2.4984 36 1 11.6911 2.3575 0.5891 37 1 10.4701 1.8774 -1.4947 38 1 8.0762 2.4259 -1.6732 39 1 4.3366 -2.6860 0.8955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361398130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:42 Heat of formation + Delta-G solvation = 8.364457 kcal Electronic energy + Delta-G solvation = -25262.757979 eV Core-core repulsion = 21557.283582 eV Total energy + Delta-G solvation = -3705.474396 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13879 -39.34892 -37.95331 -37.21340 -35.01506 -33.82522 -33.16049 -31.23665 -30.83008 -29.94485 -28.47342 -27.42705 -24.34498 -23.65185 -22.83689 -21.60708 -20.89666 -19.76297 -18.89591 -17.50932 -16.99620 -16.73217 -15.92427 -15.72150 -15.60727 -15.32120 -14.60744 -14.41800 -14.25093 -13.95544 -13.75558 -13.32919 -13.07938 -12.71314 -12.55553 -12.44799 -12.31089 -11.84574 -11.78909 -11.66906 -11.18628 -11.10908 -10.93894 -10.84047 -10.48353 -10.32575 -10.13233 -9.62506 -9.51973 -9.35949 -8.82964 -8.47991 -8.44044 -7.94723 -7.64213 -6.37542 -4.47080 0.95802 1.26308 2.36087 2.38744 2.99633 3.11264 3.21443 3.24084 3.37306 3.52479 3.96961 4.19610 4.26451 4.73960 4.83956 4.99899 5.03937 5.17146 5.36417 5.40563 5.58920 5.71816 5.74193 5.78048 5.88136 6.03029 6.16142 6.17879 6.47132 6.55418 6.73636 6.80185 6.93029 6.99968 7.08832 7.36220 7.41334 7.51764 7.53763 7.66032 7.81388 7.88947 8.03421 8.33798 8.56686 8.90608 9.20781 10.70098 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.004727 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.049743 B = 5921.418350 C = 7672.699964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.209 3.791 3 C -0.284 4.284 4 C 0.439 3.561 5 N -0.647 5.647 6 C 0.515 3.485 7 O -0.483 6.483 8 C 0.059 3.941 9 H 0.087 0.913 10 C -0.527 4.527 11 H 0.065 0.935 12 C 0.077 3.923 13 N -0.871 5.871 14 Si 0.898 3.102 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.010 4.010 19 C -0.112 4.112 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.084 4.084 24 N -0.524 5.524 25 C 0.522 3.478 26 O -0.458 6.458 27 N -0.563 5.563 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.428 0.572 33 H 0.268 0.732 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -6.189 2.830 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.066 3.934 3 C -0.311 4.311 4 C 0.197 3.803 5 N -0.293 5.293 6 C 0.304 3.696 7 O -0.352 6.352 8 C 0.038 3.962 9 H 0.104 0.896 10 C -0.564 4.564 11 H 0.083 0.917 12 C -0.129 4.129 13 N -0.505 5.505 14 Si 0.725 3.275 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.011 4.011 19 C -0.130 4.130 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.152 4.152 23 C -0.102 4.102 24 N -0.257 5.257 25 C 0.216 3.784 26 O -0.261 6.261 27 N -0.294 5.294 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.267 0.733 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.109 -7.576 2.354 10.653 hybrid contribution -0.505 1.884 -0.389 1.989 sum -7.614 -5.692 1.965 9.708 Atomic orbital electron populations 1.20755 0.87652 1.03997 1.03573 1.21150 0.96990 0.86592 0.88716 1.22078 0.93349 1.01275 1.14403 1.18636 0.87830 0.86537 0.87250 1.44095 1.08520 1.06498 1.70199 1.22194 0.80669 0.93145 0.73641 1.90735 1.68928 1.31475 1.44063 1.18111 0.87693 0.88785 1.01642 0.89575 1.20725 1.50329 0.90738 0.94603 0.91673 1.24963 0.93717 0.97956 0.96289 1.69939 1.42968 1.11379 1.26251 0.86427 0.78386 0.80257 0.82451 1.19447 1.20576 1.20676 1.19894 0.96595 0.92674 0.91971 1.20932 0.94235 1.00241 0.97632 1.20888 0.94982 1.01041 0.98156 1.20804 0.98781 1.02522 0.94335 1.20946 0.95006 1.01879 0.97402 1.20820 0.93541 0.97378 0.98447 1.67956 1.40718 0.97065 1.19970 1.20049 0.83558 0.85094 0.89724 1.84685 1.76440 1.30985 1.33974 1.67757 1.09185 1.31186 1.21243 0.89729 0.89985 0.90006 0.83180 0.73320 0.92254 0.87105 0.87565 0.87700 0.87572 0.87132 0.73256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.21 36.01 0.37 -0.47 16 2 C 0.21 2.70 6.82 -82.33 -0.56 2.14 16 3 C -0.28 -3.78 9.71 -39.12 -0.38 -4.16 16 4 C 0.44 7.62 7.45 -154.44 -1.15 6.47 16 5 N -0.65 -11.61 5.30 -11.29 -0.06 -11.67 16 6 C 0.51 11.12 7.00 -10.99 -0.08 11.04 16 7 O -0.48 -11.71 13.77 5.57 0.08 -11.63 16 8 C 0.06 1.33 2.25 -94.08 -0.21 1.12 16 9 H 0.09 2.02 7.38 -51.93 -0.38 1.64 16 10 C -0.53 -12.53 7.36 -34.44 -0.25 -12.78 16 11 H 0.07 1.58 7.82 -52.49 -0.41 1.17 16 12 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 13 N -0.87 -22.04 12.98 55.43 0.72 -21.32 16 14 Si 0.90 19.09 29.54 -169.99 -5.02 14.06 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 C -0.01 -0.24 4.29 -104.62 -0.45 -0.69 16 19 C -0.11 -2.42 9.67 -39.59 -0.38 -2.80 16 20 C -0.13 -2.56 10.05 -39.59 -0.40 -2.96 16 21 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16 22 C -0.13 -2.68 10.05 -39.59 -0.40 -3.08 16 23 C -0.08 -1.89 8.36 -39.58 -0.33 -2.22 16 24 N -0.52 -10.25 8.07 -13.89 -0.11 -10.36 16 25 C 0.52 9.01 8.71 -91.29 -0.80 8.21 16 26 O -0.46 -6.99 13.64 -18.05 -0.25 -7.24 16 27 N -0.56 -8.70 10.40 -11.02 -0.11 -8.81 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.43 6.58 8.53 -40.82 -0.35 6.23 16 33 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 34 H 0.11 2.29 7.96 -52.48 -0.42 1.87 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.11 2.54 7.86 -52.48 -0.41 2.13 16 39 H 0.41 4.00 9.06 45.56 0.41 4.41 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -32.03 345.97 -8.71 -40.74 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -3.65 Total: 12.56 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -5.51 Total: -1.55 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.43 Total: -52.15 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.17 Total: -18.87 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.03 -8.71 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361398130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.106 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds