Wall clock time and date at job start Tue Mar 31 2020 10:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38212 * 120.37282 * 2 1 4 4 C 1.39496 * 118.45726 * 180.28060 * 3 2 1 5 5 N 1.39033 * 120.49047 * 179.73271 * 4 3 2 6 6 C 1.34774 * 120.00381 * 174.38707 * 5 4 3 7 7 O 1.21270 * 119.99732 * 5.04861 * 6 5 4 8 8 C 1.50698 * 120.00436 * 185.04489 * 6 5 4 9 9 H 1.09005 * 109.47457 * 60.00398 * 8 6 5 10 10 C 1.50701 * 109.47198 * 300.00368 * 8 6 5 11 11 H 1.07999 * 119.99923 * 332.92762 * 10 8 6 12 12 C 1.37877 * 120.00051 * 152.93032 * 10 8 6 13 13 N 1.31513 * 120.00145 * 5.05920 * 12 10 8 14 14 Si 1.86802 * 120.00052 * 185.05496 * 12 10 8 15 15 H 1.48500 * 109.46953 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47044 * 120.00143 * 14 12 10 17 17 H 1.48497 * 109.47445 * 240.00327 * 14 12 10 18 18 C 1.50699 * 109.47290 * 180.02562 * 8 6 5 19 19 C 1.38235 * 120.00309 * 246.93566 * 18 8 6 20 20 C 1.38231 * 120.00400 * 179.97438 * 19 18 8 21 21 C 1.38235 * 120.00002 * 359.97040 * 20 19 18 22 22 C 1.38230 * 119.99811 * 0.02562 * 21 20 19 23 23 C 1.38236 * 120.00312 * 0.08709 * 22 21 20 24 24 N 1.32879 * 119.02397 * 359.47225 * 4 3 2 25 25 C 1.32264 * 120.64993 * 0.26347 * 24 4 3 26 26 O 1.35452 * 119.15654 * 180.02562 * 25 24 4 27 27 N 1.32328 * 121.68202 * 0.02562 * 25 24 4 28 28 H 1.09002 * 109.47298 * 270.25493 * 1 2 3 29 29 H 1.09001 * 109.46846 * 30.25758 * 1 2 3 30 30 H 1.09003 * 109.47522 * 150.25338 * 1 2 3 31 31 H 1.08002 * 120.77671 * 0.04723 * 3 2 1 32 32 H 0.97007 * 120.00243 * 354.39687 * 5 4 3 33 33 H 0.96999 * 119.99977 * 180.02562 * 13 12 10 34 34 H 1.08003 * 119.99889 * 359.97438 * 19 18 8 35 35 H 1.07999 * 120.00303 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00238 * 179.72386 * 21 20 19 37 37 H 1.08008 * 120.00409 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.00286 * 179.97438 * 23 22 21 39 39 H 0.96701 * 113.99821 * 90.01181 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1924 0.0000 4 6 3.6000 1.1458 -0.0060 5 7 4.3451 2.3196 -0.0118 6 6 5.6874 2.2664 0.0966 7 8 6.2528 1.1936 0.1070 8 6 6.4858 3.5399 0.2047 9 1 6.1718 4.0915 1.0910 10 6 6.2528 4.3846 -1.0214 11 1 5.9843 3.9162 -1.9567 12 6 6.3823 5.7554 -0.9490 13 7 6.8055 6.3181 0.1618 14 14 5.9570 6.8132 -2.4287 15 1 5.5077 5.9440 -3.5458 16 1 4.8680 7.7557 -2.0667 17 1 7.1564 7.5807 -2.8498 18 6 7.9514 3.2063 0.3132 19 6 8.6363 3.4734 1.4839 20 6 9.9805 3.1670 1.5836 21 6 10.6398 2.5928 0.5128 22 6 9.9550 2.3257 -0.6578 23 6 8.6112 2.6343 -0.7584 24 7 4.2055 -0.0370 -0.0008 25 6 3.4999 -1.1557 0.0047 26 8 4.1484 -2.3449 0.0105 27 7 2.1767 -1.1428 0.0047 28 1 -0.3634 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5099 31 1 1.6847 2.1384 0.0008 32 1 3.8988 3.1770 -0.0938 33 1 6.8962 7.2825 0.2128 34 1 8.1211 3.9215 2.3207 35 1 10.5155 3.3752 2.4984 36 1 11.6911 2.3575 0.5891 37 1 10.4701 1.8774 -1.4947 38 1 8.0762 2.4259 -1.6732 39 1 4.3366 -2.6860 0.8955 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361398130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:41 Heat of formation + Delta-G solvation = -15.085386 kcal Electronic energy + Delta-G solvation = -25263.774840 eV Core-core repulsion = 21557.283582 eV Total energy + Delta-G solvation = -3706.491258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39672 -40.91501 -39.48596 -38.43451 -36.39774 -35.59743 -34.44414 -32.91968 -32.07847 -31.54504 -29.60132 -28.93023 -26.06777 -24.91555 -24.15989 -23.21519 -22.35245 -21.31564 -20.10315 -19.01085 -18.48719 -18.31593 -17.47415 -17.19411 -16.91067 -16.44140 -16.31392 -15.95270 -15.75198 -15.46321 -15.01447 -14.72971 -14.26869 -14.12120 -13.97621 -13.77826 -13.44676 -13.32752 -13.28159 -12.89408 -12.85792 -12.79228 -12.29967 -12.25138 -11.98573 -11.97092 -11.72928 -11.28880 -10.91668 -10.84340 -10.67411 -9.92053 -9.74548 -9.56185 -9.27768 -8.22967 -6.37333 -0.22700 0.06453 0.75234 0.77925 1.41915 1.46624 1.55669 1.72061 1.84158 2.24646 2.41573 2.72174 3.05107 3.16947 3.26591 3.64856 4.02834 4.12462 4.22007 4.28081 4.34794 4.40636 4.47408 4.49516 4.82247 4.84033 4.88121 4.88493 4.94436 5.04466 5.29513 5.34208 5.41676 5.53717 5.62991 5.73903 5.77471 5.80431 5.89232 6.19788 6.32307 6.42193 6.59677 6.68787 7.05403 7.29670 7.36201 8.84626 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.004727 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.049743 B = 5921.418350 C = 7672.699964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.208 3.792 3 C -0.265 4.265 4 C 0.410 3.590 5 N -0.641 5.641 6 C 0.518 3.482 7 O -0.517 6.517 8 C 0.063 3.937 9 H 0.071 0.929 10 C -0.526 4.526 11 H 0.054 0.946 12 C 0.040 3.960 13 N -0.897 5.897 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.289 1.289 18 C -0.035 4.035 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.111 4.111 24 N -0.569 5.569 25 C 0.508 3.492 26 O -0.469 6.469 27 N -0.565 5.565 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.190 0.810 32 H 0.437 0.563 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 -5.961 2.807 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 C -0.291 4.291 4 C 0.170 3.830 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.389 6.389 8 C 0.041 3.959 9 H 0.089 0.911 10 C -0.563 4.563 11 H 0.072 0.928 12 C -0.163 4.163 13 N -0.533 5.533 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.193 1.193 17 H -0.215 1.215 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.129 4.129 24 N -0.303 5.303 25 C 0.202 3.798 26 O -0.275 6.275 27 N -0.296 5.296 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.208 0.792 32 H 0.279 0.721 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -8.245 -7.358 2.344 11.296 hybrid contribution -0.210 1.712 -0.345 1.759 sum -8.455 -5.646 1.999 10.362 Atomic orbital electron populations 1.20937 0.83691 1.05526 1.05323 1.22062 0.99219 0.85607 0.86707 1.22471 0.91369 1.03325 1.11906 1.18955 0.89341 0.85646 0.89013 1.43775 1.07413 1.07556 1.70067 1.21948 0.81885 0.92199 0.73311 1.90702 1.70008 1.32225 1.45945 1.17993 0.88349 0.89044 1.00475 0.91133 1.20747 1.50000 0.91079 0.94493 0.92761 1.25556 0.93639 0.98797 0.98337 1.70030 1.44034 1.11528 1.27712 0.85553 0.77975 0.78750 0.79695 1.19432 1.19300 1.21514 1.20028 0.96795 0.93820 0.92938 1.21110 0.95676 1.01232 0.97312 1.21304 0.94101 0.99711 0.99731 1.21261 1.00602 1.00973 0.93220 1.21302 0.94075 1.01193 0.98999 1.20838 0.95011 0.99191 0.97900 1.67793 1.42754 0.98397 1.21372 1.20202 0.84255 0.84978 0.90398 1.84629 1.76531 1.30451 1.35873 1.67904 1.08200 1.32452 1.21041 0.87606 0.87223 0.89704 0.79244 0.72149 0.92237 0.87260 0.84228 0.83654 0.84982 0.88999 0.71101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.21 71.24 0.73 -0.49 16 2 C 0.21 4.87 6.82 42.46 0.29 5.16 16 3 C -0.27 -6.52 9.71 22.57 0.22 -6.30 16 4 C 0.41 14.30 7.45 133.00 0.99 15.29 16 5 N -0.64 -23.59 5.30 -308.04 -1.63 -25.22 16 6 C 0.52 23.44 7.00 87.66 0.61 24.05 16 7 O -0.52 -26.37 13.77 -3.00 -0.04 -26.41 16 8 C 0.06 2.97 2.25 -13.03 -0.03 2.94 16 9 H 0.07 3.50 7.38 -2.38 -0.02 3.48 16 10 C -0.53 -25.78 7.36 25.60 0.19 -25.59 16 11 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 12 C 0.04 1.96 5.45 84.65 0.46 2.42 16 13 N -0.90 -46.15 12.98 21.45 0.28 -45.87 16 14 Si 0.95 39.32 29.54 68.60 2.03 41.34 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 18 C -0.03 -1.66 4.29 -19.87 -0.09 -1.75 16 19 C -0.14 -5.94 9.67 22.27 0.22 -5.72 16 20 C -0.13 -4.87 10.05 22.27 0.22 -4.64 16 21 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 22 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 23 C -0.11 -5.17 8.36 22.27 0.19 -4.98 16 24 N -0.57 -22.88 8.07 -310.84 -2.51 -25.39 16 25 C 0.51 17.72 8.71 180.58 1.57 19.30 16 26 O -0.47 -14.64 13.64 -87.50 -1.19 -15.83 16 27 N -0.57 -16.88 10.40 -301.72 -3.14 -20.01 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.19 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.44 13.63 8.53 -92.70 -0.79 12.84 16 33 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 34 H 0.11 4.67 7.96 -2.91 -0.02 4.65 16 35 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.09 4.48 7.86 -2.91 -0.02 4.45 16 39 H 0.43 8.63 9.06 -74.06 -0.67 7.96 16 Total: -1.00 -72.06 345.97 -0.54 -72.60 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.35 Total: 35.12 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.02 Total: 9.67 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -7.00 Total: -116.49 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.23 Total: -42.25 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.34 kcal Total: -72.06 -0.54 -72.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361398130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.516 kcal (2) G-P(sol) polarization free energy of solvation -72.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds