Wall clock time and date at job start Tue Mar 31 2020 10:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34865 * 119.10055 * 2 1 4 4 C 1.41667 * 119.34098 * 179.69240 * 3 2 1 5 5 O 1.22085 * 121.07023 * 180.30256 * 4 3 2 6 6 C 1.47118 * 117.86206 * 0.51959 * 4 3 2 7 7 C 1.47246 * 120.88092 * 179.75465 * 6 4 3 8 8 O 1.21622 * 120.00126 * 359.72253 * 7 6 4 9 9 N 1.34779 * 119.99458 * 179.72430 * 7 6 4 10 10 C 1.39389 * 119.99451 * 185.79115 * 9 7 6 11 11 C 1.38628 * 119.58035 * 185.99076 * 10 9 7 12 12 C 1.40801 * 118.79543 * 179.97438 * 11 10 9 13 13 C 1.41546 * 120.99564 * 180.02562 * 12 11 10 14 14 H 1.07990 * 119.99903 * 329.43818 * 13 12 11 15 15 C 1.40026 * 119.99808 * 149.43477 * 13 12 11 16 16 N 1.30749 * 120.00202 * 0.56911 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 180.56557 * 15 13 12 18 18 H 1.48493 * 109.47226 * 94.99405 * 17 15 13 19 19 H 1.48494 * 109.47410 * 214.99624 * 17 15 13 20 20 H 1.48497 * 109.46668 * 334.99572 * 17 15 13 21 21 C 1.41176 * 118.00529 * 0.02562 * 12 11 10 22 22 C 1.37583 * 119.02349 * 359.97438 * 21 12 11 23 23 N 1.32082 * 121.11304 * 359.97438 * 22 21 12 24 24 C 1.38006 * 118.23157 * 359.48642 * 6 4 3 25 25 N 1.34348 * 120.37133 * 0.26956 * 24 6 4 26 26 C 1.46494 * 118.80760 * 180.02562 * 25 24 6 27 27 H 1.09003 * 109.47238 * 263.67741 * 1 2 3 28 28 H 1.08998 * 109.46972 * 23.67308 * 1 2 3 29 29 H 1.08997 * 109.47316 * 143.67373 * 1 2 3 30 30 H 1.07996 * 120.32639 * 359.97438 * 3 2 1 31 31 H 0.96994 * 120.00519 * 5.79467 * 9 7 6 32 32 H 1.07999 * 120.60284 * 0.02565 * 11 10 9 33 33 H 0.97004 * 120.00045 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.48969 * 180.02562 * 21 12 11 35 35 H 1.08006 * 119.44550 * 179.97438 * 22 21 12 36 36 H 1.08000 * 119.81445 * 180.24904 * 24 6 4 37 37 H 1.08999 * 109.47484 * 96.76210 * 26 25 24 38 38 H 1.09000 * 109.47428 * 216.75805 * 26 25 24 39 39 H 1.08996 * 109.47119 * 336.76241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 0.0066 5 8 4.2052 2.2327 0.0123 6 6 4.2726 -0.1133 0.0015 7 6 5.7433 -0.1847 0.0024 8 8 6.4018 0.8379 0.0025 9 7 6.3598 -1.3832 0.0033 10 6 7.7464 -1.4535 0.1260 11 6 8.3833 -2.6785 0.0010 12 6 9.7847 -2.7304 0.1274 13 6 10.4825 -3.9560 0.0076 14 1 10.0073 -4.8792 0.3046 15 6 11.7889 -3.9715 -0.4962 16 7 12.3682 -2.8526 -0.8455 17 14 12.7041 -5.5907 -0.6691 18 1 12.5429 -6.1051 -2.0528 19 1 14.1460 -5.3771 -0.3853 20 1 12.1510 -6.5771 0.2932 21 6 10.4728 -1.5233 0.3772 22 6 9.7540 -0.3552 0.4857 23 7 8.4392 -0.3487 0.3596 24 6 3.5076 -1.2620 0.0014 25 7 2.1663 -1.1848 0.0005 26 6 1.3879 -2.4258 0.0010 27 1 -0.3634 -0.1132 1.0214 28 1 -0.3633 0.9412 -0.4126 29 1 -0.3634 -0.8279 -0.6087 30 1 1.6136 2.1082 -0.0004 31 1 5.8385 -2.1968 -0.0816 32 1 7.8149 -3.5766 -0.1907 33 1 13.2734 -2.8633 -1.1941 34 1 11.5479 -1.5167 0.4808 35 1 10.2735 0.5721 0.6771 36 1 3.9899 -2.2283 0.0017 37 1 1.0916 -2.6685 1.0215 38 1 0.4977 -2.2966 -0.6146 39 1 1.9950 -3.2357 -0.4034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363708011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:15 Heat of formation + Delta-G solvation = 14.949951 kcal Electronic energy + Delta-G solvation = -24627.361830 eV Core-core repulsion = 20922.173002 eV Total energy + Delta-G solvation = -3705.188828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33399 -39.37387 -38.03998 -37.27607 -34.35163 -33.84413 -33.35540 -32.58508 -30.60770 -29.12131 -27.73734 -27.12938 -25.93903 -24.36626 -22.55114 -21.77782 -21.19434 -19.93261 -18.16569 -17.93086 -17.31202 -16.34881 -16.29221 -15.88727 -15.64420 -14.99731 -14.53737 -14.48783 -14.14992 -13.91532 -13.87007 -13.74367 -13.45580 -13.36221 -13.20834 -12.86774 -12.66013 -12.29541 -12.24101 -12.19733 -12.07320 -11.41241 -11.21949 -10.92734 -10.35619 -9.95240 -9.72123 -9.58601 -9.51506 -9.36216 -9.00369 -8.01855 -7.93273 -7.66868 -6.95226 -6.63581 -4.60675 0.80408 1.19199 2.14062 2.72420 2.81546 3.04080 3.08112 3.23250 3.47488 3.56690 3.83214 3.89744 4.13092 4.15242 4.30827 4.47050 4.56444 4.76830 4.80104 4.87933 4.94429 4.98401 5.23994 5.32349 5.55314 5.65234 5.72082 6.02337 6.27664 6.40261 6.61003 6.63109 6.63935 6.84155 6.96813 7.21516 7.45350 7.59101 7.89700 7.98182 8.22619 8.24824 8.52890 8.77193 8.80621 9.00282 9.75896 10.18583 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.002872 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.979033 B = 9747.129514 C =10791.990338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.152 3.848 3 C -0.269 4.269 4 C 0.405 3.595 5 O -0.476 6.476 6 C -0.284 4.284 7 C 0.553 3.447 8 O -0.445 6.445 9 N -0.665 5.665 10 C 0.349 3.651 11 C -0.299 4.299 12 C 0.143 3.857 13 C -0.458 4.458 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.799 5.799 17 Si 0.918 3.082 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.219 4.219 22 C 0.102 3.898 23 N -0.548 5.548 24 C 0.162 3.838 25 N -0.473 5.473 26 C 0.050 3.950 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.151 0.849 31 H 0.397 0.603 32 H 0.101 0.899 33 H 0.281 0.719 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.684 -4.970 0.716 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 C -0.294 4.294 4 C 0.291 3.709 5 O -0.356 6.356 6 C -0.295 4.295 7 C 0.337 3.663 8 O -0.312 6.312 9 N -0.313 5.313 10 C 0.121 3.879 11 C -0.324 4.324 12 C 0.134 3.866 13 C -0.490 4.490 14 H 0.097 0.903 15 C -0.145 4.145 16 N -0.425 5.425 17 Si 0.743 3.257 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.242 4.242 22 C -0.049 4.049 23 N -0.267 5.267 24 C 0.033 3.967 25 N -0.161 5.161 26 C -0.092 4.092 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.169 0.831 31 H 0.231 0.769 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.183 0.817 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.248 -2.832 0.721 23.431 hybrid contribution 0.592 -2.229 -0.335 2.331 sum -22.656 -5.062 0.386 23.218 Atomic orbital electron populations 1.21165 0.88196 1.04942 1.03964 1.20228 0.94726 0.85048 0.95325 1.22269 0.96328 0.97122 1.13647 1.18173 0.88202 0.87969 0.76584 1.90839 1.69918 1.33177 1.41678 1.22785 0.94738 0.95076 1.16951 1.17562 0.85670 0.84118 0.78919 1.90945 1.64853 1.32985 1.42433 1.43373 1.05887 1.08258 1.73765 1.17957 0.82411 0.90722 0.96761 1.21259 0.96031 0.94905 1.20244 1.17625 0.89780 0.93704 0.85448 1.19516 0.97577 0.93850 1.38036 0.90315 1.25946 0.97255 0.98171 0.93105 1.69730 1.13841 1.27521 1.31453 0.86140 0.78668 0.81522 0.79399 1.19551 1.20078 1.18574 1.22491 1.01893 0.92796 1.06986 1.21992 0.88731 0.97167 0.97029 1.67220 1.08786 1.28213 1.22483 1.22225 0.82035 0.99960 0.92517 1.42503 1.05257 1.07066 1.61289 1.22515 0.97786 0.84529 1.04351 0.89446 0.88962 0.90218 0.83148 0.76865 0.88127 0.90818 0.84456 0.85777 0.81653 0.90053 0.88973 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 9.34 36.01 0.34 -0.05 16 2 C 0.15 1.16 6.64 -82.13 -0.54 0.62 16 3 C -0.27 -3.17 9.57 -39.47 -0.38 -3.54 16 4 C 0.41 7.13 6.97 -34.67 -0.24 6.89 16 5 O -0.48 -10.93 16.41 -15.18 -0.25 -11.18 16 6 C -0.28 -4.58 6.05 -102.72 -0.62 -5.20 16 7 C 0.55 11.72 7.72 -12.60 -0.10 11.62 16 8 O -0.44 -12.04 13.87 -14.76 -0.20 -12.24 16 9 N -0.67 -12.92 5.33 -12.52 -0.07 -12.98 16 10 C 0.35 8.53 7.40 -154.76 -1.15 7.38 16 11 C -0.30 -7.23 9.73 -38.47 -0.37 -7.61 16 12 C 0.14 3.81 5.60 -106.55 -0.60 3.22 16 13 C -0.46 -11.86 9.13 -37.65 -0.34 -12.20 16 14 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 15 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 16 N -0.80 -20.54 10.54 55.55 0.59 -19.95 16 17 Si 0.92 18.32 29.56 -169.99 -5.02 13.29 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 C -0.22 -5.86 8.78 -38.71 -0.34 -6.20 16 22 C 0.10 2.69 11.15 -17.68 -0.20 2.49 16 23 N -0.55 -14.91 7.90 -12.53 -0.10 -15.01 16 24 C 0.16 1.58 9.79 -16.54 -0.16 1.42 16 25 N -0.47 -3.23 2.97 -119.75 -0.36 -3.58 16 26 C 0.05 0.09 9.96 59.84 0.60 0.69 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.25 7.97 -51.93 -0.41 -0.17 16 29 H 0.08 0.09 6.04 -51.93 -0.31 -0.23 16 30 H 0.15 1.52 8.00 -52.49 -0.42 1.10 16 31 H 0.40 5.54 6.79 -40.82 -0.28 5.26 16 32 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 34 H 0.14 3.73 6.05 -52.48 -0.32 3.41 16 35 H 0.12 2.96 8.06 -52.48 -0.42 2.54 16 36 H 0.17 1.04 6.29 -52.49 -0.33 0.71 16 37 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.09 0.01 5.98 -51.93 -0.31 -0.30 16 39 H 0.09 0.06 7.84 -51.93 -0.41 -0.35 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -40.61 334.64 -8.60 -49.21 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.03 Total: 6.17 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -4.20 Total: 1.23 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.06 Total: -51.53 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.45 Total: -23.42 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -40.61 -8.60 -49.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363708011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.162 kcal (2) G-P(sol) polarization free energy of solvation -40.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds