Wall clock time and date at job start Tue Mar 31 2020 10:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34865 * 119.10055 * 2 1 4 4 C 1.41667 * 119.34098 * 179.69240 * 3 2 1 5 5 O 1.22085 * 121.07023 * 180.30256 * 4 3 2 6 6 C 1.47118 * 117.86206 * 0.51959 * 4 3 2 7 7 C 1.47246 * 120.88092 * 179.75465 * 6 4 3 8 8 O 1.21622 * 120.00126 * 359.72253 * 7 6 4 9 9 N 1.34779 * 119.99458 * 179.72430 * 7 6 4 10 10 C 1.39389 * 119.99451 * 185.79115 * 9 7 6 11 11 C 1.38628 * 119.58035 * 185.99076 * 10 9 7 12 12 C 1.40801 * 118.79543 * 179.97438 * 11 10 9 13 13 C 1.41546 * 120.99564 * 180.02562 * 12 11 10 14 14 H 1.07990 * 119.99903 * 329.43818 * 13 12 11 15 15 C 1.40026 * 119.99808 * 149.43477 * 13 12 11 16 16 N 1.30749 * 120.00202 * 0.56911 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 180.56557 * 15 13 12 18 18 H 1.48493 * 109.47226 * 94.99405 * 17 15 13 19 19 H 1.48494 * 109.47410 * 214.99624 * 17 15 13 20 20 H 1.48497 * 109.46668 * 334.99572 * 17 15 13 21 21 C 1.41176 * 118.00529 * 0.02562 * 12 11 10 22 22 C 1.37583 * 119.02349 * 359.97438 * 21 12 11 23 23 N 1.32082 * 121.11304 * 359.97438 * 22 21 12 24 24 C 1.38006 * 118.23157 * 359.48642 * 6 4 3 25 25 N 1.34348 * 120.37133 * 0.26956 * 24 6 4 26 26 C 1.46494 * 118.80760 * 180.02562 * 25 24 6 27 27 H 1.09003 * 109.47238 * 263.67741 * 1 2 3 28 28 H 1.08998 * 109.46972 * 23.67308 * 1 2 3 29 29 H 1.08997 * 109.47316 * 143.67373 * 1 2 3 30 30 H 1.07996 * 120.32639 * 359.97438 * 3 2 1 31 31 H 0.96994 * 120.00519 * 5.79467 * 9 7 6 32 32 H 1.07999 * 120.60284 * 0.02565 * 11 10 9 33 33 H 0.97004 * 120.00045 * 179.97438 * 16 15 13 34 34 H 1.08003 * 120.48969 * 180.02562 * 21 12 11 35 35 H 1.08006 * 119.44550 * 179.97438 * 22 21 12 36 36 H 1.08000 * 119.81445 * 180.24904 * 24 6 4 37 37 H 1.08999 * 109.47484 * 96.76210 * 26 25 24 38 38 H 1.09000 * 109.47428 * 216.75805 * 26 25 24 39 39 H 1.08996 * 109.47119 * 336.76241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 0.0066 5 8 4.2052 2.2327 0.0123 6 6 4.2726 -0.1133 0.0015 7 6 5.7433 -0.1847 0.0024 8 8 6.4018 0.8379 0.0025 9 7 6.3598 -1.3832 0.0033 10 6 7.7464 -1.4535 0.1260 11 6 8.3833 -2.6785 0.0010 12 6 9.7847 -2.7304 0.1274 13 6 10.4825 -3.9560 0.0076 14 1 10.0073 -4.8792 0.3046 15 6 11.7889 -3.9715 -0.4962 16 7 12.3682 -2.8526 -0.8455 17 14 12.7041 -5.5907 -0.6691 18 1 12.5429 -6.1051 -2.0528 19 1 14.1460 -5.3771 -0.3853 20 1 12.1510 -6.5771 0.2932 21 6 10.4728 -1.5233 0.3772 22 6 9.7540 -0.3552 0.4857 23 7 8.4392 -0.3487 0.3596 24 6 3.5076 -1.2620 0.0014 25 7 2.1663 -1.1848 0.0005 26 6 1.3879 -2.4258 0.0010 27 1 -0.3634 -0.1132 1.0214 28 1 -0.3633 0.9412 -0.4126 29 1 -0.3634 -0.8279 -0.6087 30 1 1.6136 2.1082 -0.0004 31 1 5.8385 -2.1968 -0.0816 32 1 7.8149 -3.5766 -0.1907 33 1 13.2734 -2.8633 -1.1941 34 1 11.5479 -1.5167 0.4808 35 1 10.2735 0.5721 0.6771 36 1 3.9899 -2.2283 0.0017 37 1 1.0916 -2.6685 1.0215 38 1 0.4977 -2.2966 -0.6146 39 1 1.9950 -3.2357 -0.4034 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363708011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:15 Heat of formation + Delta-G solvation = -14.029681 kcal Electronic energy + Delta-G solvation = -24628.618481 eV Core-core repulsion = 20922.173002 eV Total energy + Delta-G solvation = -3706.445479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25229 -41.02614 -39.55985 -38.78537 -36.19354 -35.42919 -34.30593 -33.58317 -32.58295 -30.58190 -28.82630 -27.89586 -27.65354 -25.33495 -24.02362 -23.69888 -22.42125 -21.44108 -19.78007 -19.18681 -18.47263 -17.53110 -17.29462 -17.02442 -16.93429 -16.71430 -16.07878 -15.92984 -15.75104 -15.62897 -14.99739 -14.87043 -14.52135 -14.22998 -14.18567 -14.13706 -13.82454 -13.79582 -13.31268 -13.17580 -12.90561 -12.76708 -12.65973 -12.50374 -12.10312 -11.80619 -11.47815 -11.22432 -11.12617 -10.47258 -10.39805 -9.93041 -9.60040 -9.12260 -8.82279 -8.51314 -6.59607 -0.22987 0.32994 0.80821 1.00570 1.42558 1.47021 1.57036 1.58026 2.02344 2.08386 2.22996 2.76323 2.91148 3.22236 3.57770 3.60485 3.73035 3.79949 3.96675 4.25636 4.32826 4.44633 4.49052 4.72395 4.74139 4.74957 4.83894 4.84755 4.89006 4.92826 5.04913 5.17486 5.29102 5.32509 5.46281 5.65142 5.72104 5.79862 5.99854 6.16040 6.47587 6.62069 6.81537 6.85996 7.10648 7.39737 7.86349 8.34154 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.002872 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.979033 B = 9747.129514 C =10791.990338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.188 3.812 3 C -0.303 4.303 4 C 0.380 3.620 5 O -0.570 6.570 6 C -0.349 4.349 7 C 0.550 3.450 8 O -0.522 6.522 9 N -0.647 5.647 10 C 0.344 3.656 11 C -0.298 4.298 12 C 0.114 3.886 13 C -0.479 4.479 14 H 0.092 0.908 15 C 0.027 3.973 16 N -0.831 5.831 17 Si 0.998 3.002 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.251 1.251 21 C -0.237 4.237 22 C 0.091 3.909 23 N -0.585 5.585 24 C 0.223 3.777 25 N -0.454 5.454 26 C 0.031 3.969 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.156 0.844 31 H 0.423 0.577 32 H 0.136 0.864 33 H 0.288 0.712 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.213 0.787 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.808 -10.285 0.404 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 C -0.326 4.326 4 C 0.273 3.727 5 O -0.459 6.459 6 C -0.360 4.360 7 C 0.339 3.661 8 O -0.395 6.395 9 N -0.296 5.296 10 C 0.115 3.885 11 C -0.323 4.323 12 C 0.106 3.894 13 C -0.510 4.510 14 H 0.111 0.889 15 C -0.187 4.187 16 N -0.458 5.458 17 Si 0.818 3.182 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.174 1.174 21 C -0.261 4.261 22 C -0.060 4.060 23 N -0.305 5.305 24 C 0.088 3.912 25 N -0.137 5.137 26 C -0.107 4.107 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.174 0.826 31 H 0.263 0.737 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.229 0.771 37 H 0.124 0.876 38 H 0.140 0.860 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.508 -8.239 0.410 28.718 hybrid contribution 1.589 -0.776 -0.246 1.785 sum -25.919 -9.015 0.164 27.442 Atomic orbital electron populations 1.21405 0.83573 1.06916 1.06151 1.20879 0.97162 0.83806 0.90127 1.22111 0.93537 0.99702 1.17213 1.19025 0.90607 0.87644 0.75397 1.90780 1.71869 1.35676 1.47578 1.22167 0.92155 0.96993 1.24719 1.18350 0.87744 0.83224 0.76773 1.90896 1.66965 1.35434 1.46217 1.43205 1.04129 1.09366 1.72938 1.18305 0.84362 0.90230 0.95588 1.21489 0.95423 0.95930 1.19492 1.18068 0.91277 0.94072 0.85989 1.19877 0.98666 0.93920 1.38561 0.88944 1.26991 0.97680 1.02093 0.91964 1.69824 1.14509 1.30042 1.31408 0.84942 0.77072 0.76469 0.79684 1.18814 1.19598 1.17398 1.22445 1.01387 0.93540 1.08715 1.22170 0.89019 0.97595 0.97224 1.67294 1.09139 1.30085 1.23959 1.22637 0.83098 0.99324 0.86142 1.43219 1.04727 1.09189 1.56574 1.23158 0.98556 0.82005 1.06955 0.87040 0.88381 0.86657 0.82614 0.73697 0.84635 0.90082 0.85596 0.85055 0.77109 0.87561 0.85958 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.00 9.34 71.24 0.67 0.67 16 2 C 0.19 2.12 6.64 41.20 0.27 2.39 16 3 C -0.30 -7.14 9.57 22.34 0.21 -6.93 16 4 C 0.38 14.53 6.97 25.45 0.18 14.71 16 5 O -0.57 -29.76 16.41 13.55 0.22 -29.53 16 6 C -0.35 -11.53 6.05 -18.63 -0.11 -11.65 16 7 C 0.55 24.67 7.72 86.61 0.67 25.34 16 8 O -0.52 -31.02 13.87 15.04 0.21 -30.81 16 9 N -0.65 -25.20 5.33 -311.77 -1.66 -26.86 16 10 C 0.34 17.22 7.40 132.79 0.98 18.20 16 11 C -0.30 -14.40 9.73 22.99 0.22 -14.18 16 12 C 0.11 6.22 5.60 -21.12 -0.12 6.10 16 13 C -0.48 -24.68 9.13 23.52 0.21 -24.47 16 14 H 0.09 4.37 7.85 -2.92 -0.02 4.35 16 15 C 0.03 1.34 5.42 85.29 0.46 1.80 16 16 N -0.83 -43.48 10.54 21.84 0.23 -43.24 16 17 Si 1.00 36.55 29.56 68.60 2.03 38.57 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 19 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 21 C -0.24 -13.38 8.78 22.84 0.20 -13.18 16 22 C 0.09 5.12 11.15 84.50 0.94 6.06 16 23 N -0.58 -33.79 7.90 -193.57 -1.53 -35.31 16 24 C 0.22 3.51 9.79 84.25 0.83 4.33 16 25 N -0.45 -3.66 2.97 -532.77 -1.58 -5.24 16 26 C 0.03 -0.14 9.96 127.77 1.27 1.14 16 27 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.10 0.04 7.97 -2.39 -0.02 0.02 16 29 H 0.12 -0.71 6.04 -2.39 -0.01 -0.72 16 30 H 0.16 3.32 8.00 -2.91 -0.02 3.29 16 31 H 0.42 10.75 6.79 -92.71 -0.63 10.12 16 32 H 0.14 5.41 8.06 -2.91 -0.02 5.39 16 33 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 34 H 0.13 7.26 6.05 -2.91 -0.02 7.24 16 35 H 0.13 6.83 8.06 -2.91 -0.02 6.81 16 36 H 0.21 1.35 6.29 -2.91 -0.02 1.33 16 37 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.12 -1.09 5.98 -2.39 -0.01 -1.10 16 39 H 0.12 -0.89 7.84 -2.39 -0.02 -0.91 16 Total: -1.00 -105.29 334.64 5.30 -100.00 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.49 Total: 22.10 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.89 Total: 10.33 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.54 Total: -110.66 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: 0.43 Total: -60.34 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.57 kcal Total: -105.29 5.30 -100.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363708011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.968 kcal (2) G-P(sol) polarization free energy of solvation -105.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds