Wall clock time and date at job start Tue Mar 31 2020 10:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48490 * 109.47249 * 269.99855 * 3 2 1 5 5 H 1.48505 * 109.46978 * 30.00061 * 3 2 1 6 6 H 1.48498 * 109.46840 * 149.99595 * 3 2 1 7 7 C 1.40030 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 192.10058 * 7 2 1 9 9 C 1.41541 * 119.99880 * 12.11135 * 7 2 1 10 10 C 1.41167 * 120.99685 * 201.12179 * 9 7 2 11 11 C 1.36591 * 119.12813 * 180.02562 * 10 9 7 12 12 N 1.32062 * 121.26005 * 359.73808 * 11 10 9 13 13 C 1.32496 * 122.22921 * 0.53195 * 12 11 10 14 14 N 1.39460 * 119.64908 * 179.74491 * 13 12 11 15 15 C 1.34777 * 120.00060 * 6.02087 * 14 13 12 16 16 O 1.21583 * 119.99994 * 355.45238 * 15 14 13 17 17 N 1.34777 * 120.00506 * 175.17765 * 15 14 13 18 18 C 1.46493 * 120.00657 * 180.27476 * 17 15 14 19 19 C 1.50695 * 109.47347 * 179.97438 * 18 17 15 20 20 C 1.38285 * 119.97489 * 269.72763 * 19 18 17 21 21 C 1.38244 * 120.11220 * 179.72660 * 20 19 18 22 22 C 1.38165 * 120.05415 * 0.54576 * 21 20 19 23 23 C 1.38714 * 119.94486 * 359.72817 * 22 21 20 24 24 O 1.35895 * 120.05477 * 179.97438 * 23 22 21 25 25 C 1.38129 * 119.97044 * 90.00127 * 19 18 17 26 26 C 1.38639 * 120.70084 * 359.47473 * 13 12 11 27 27 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.43442 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.36721 * 180.02562 * 11 10 9 30 30 H 0.97000 * 119.99920 * 186.01178 * 14 13 12 31 31 H 0.97000 * 119.99377 * 0.27335 * 17 15 14 32 32 H 1.08999 * 109.47124 * 300.00153 * 18 17 15 33 33 H 1.09002 * 109.46839 * 59.99810 * 18 17 15 34 34 H 1.08001 * 119.94444 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.97445 * 180.24779 * 21 20 19 36 36 H 1.08004 * 120.02835 * 179.74867 * 22 21 20 37 37 H 0.96708 * 114.00335 * 270.02474 * 24 23 22 38 38 H 1.08003 * 120.02484 * 359.97438 * 25 19 18 39 39 H 1.07998 * 120.66226 * 180.27064 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0695 -1.2231 0.1966 9 6 1.3235 -2.4249 -0.2561 10 6 1.8595 -3.6638 0.1571 11 6 1.1673 -4.8104 -0.1110 12 7 0.0079 -4.7791 -0.7427 13 6 -0.5402 -3.6466 -1.1579 14 7 -1.7647 -3.6766 -1.8248 15 6 -2.4425 -4.8361 -1.9373 16 8 -1.9493 -5.8705 -1.5309 17 7 -3.6692 -4.8483 -2.4953 18 6 -4.4085 -6.1076 -2.6122 19 6 -5.7416 -5.8488 -3.2654 20 6 -6.8449 -5.5475 -2.4882 21 6 -8.0680 -5.3040 -3.0849 22 6 -8.1933 -5.3724 -4.4592 23 6 -7.0893 -5.6800 -5.2407 24 8 -7.2101 -5.7484 -6.5925 25 6 -5.8616 -5.9184 -4.6397 26 6 0.0879 -2.4315 -0.9317 27 1 -0.4850 0.8400 0.0004 28 1 2.8049 -3.7045 0.6776 29 1 1.5736 -5.7602 0.2038 30 1 -2.1286 -2.8630 -2.2074 31 1 -4.0627 -4.0231 -2.8195 32 1 -3.8364 -6.8097 -3.2187 33 1 -4.5664 -6.5296 -1.6196 34 1 -6.7501 -5.4983 -1.4135 35 1 -8.9274 -5.0649 -2.4760 36 1 -9.1499 -5.1861 -4.9246 37 1 -7.4418 -6.6273 -6.9228 38 1 -5.0005 -6.1578 -5.2460 39 1 -0.3616 -1.5084 -1.2666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365071631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:07 Heat of formation + Delta-G solvation = -4.373274 kcal Electronic energy + Delta-G solvation = -24004.351387 eV Core-core repulsion = 20298.324641 eV Total energy + Delta-G solvation = -3706.026746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23403 -39.60494 -38.05219 -37.16218 -34.73043 -34.12668 -33.70495 -31.46753 -30.45405 -30.09519 -28.53267 -26.14070 -25.90653 -22.90151 -22.17246 -21.83619 -21.36049 -20.07217 -18.63846 -17.82654 -17.63949 -16.74273 -16.17884 -16.10920 -15.42449 -15.29612 -14.92038 -14.65575 -14.27261 -14.14708 -14.07723 -13.51628 -13.12125 -13.07590 -12.82245 -12.58783 -12.52078 -12.28836 -11.96903 -11.76574 -11.41440 -11.18034 -10.88418 -10.78190 -10.26808 -10.07923 -9.75517 -9.65225 -9.38289 -9.21304 -8.94841 -8.80600 -7.96273 -7.70052 -6.97073 -6.73712 -4.61664 0.85254 0.97126 2.72122 2.82855 2.99820 3.01674 3.05156 3.27637 3.43353 3.84640 3.86907 3.89812 4.43080 4.57807 4.66495 4.71896 4.81042 4.99274 5.12496 5.32990 5.50873 5.65501 5.73686 5.74777 5.98760 6.05839 6.07786 6.27891 6.46227 6.57405 6.64585 6.69408 6.83873 6.95748 7.19283 7.31214 7.31663 7.47396 7.52678 7.90447 8.13613 8.41659 8.49640 8.75797 8.77846 9.20618 9.77420 10.07582 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002563 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.159553 B =10923.321773 C =11824.504532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.139 3.861 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.353 3.647 14 N -0.667 5.667 15 C 0.692 3.308 16 O -0.533 6.533 17 N -0.751 5.751 18 C 0.183 3.817 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.141 4.141 23 C 0.100 3.900 24 O -0.499 6.499 25 C -0.125 4.125 26 C -0.250 4.250 27 H 0.281 0.719 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.404 0.596 31 H 0.393 0.607 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.390 0.610 38 H 0.131 0.869 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 -5.856 -8.419 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.128 3.872 14 N -0.315 5.315 15 C 0.391 3.609 16 O -0.404 6.404 17 N -0.410 5.410 18 C 0.059 3.941 19 C -0.086 4.086 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.160 4.160 23 C 0.056 3.944 24 O -0.310 6.310 25 C -0.144 4.144 26 C -0.276 4.276 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.238 0.762 31 H 0.226 0.774 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.246 0.754 38 H 0.149 0.851 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.070 -6.925 -8.155 19.306 hybrid contribution 0.175 1.952 -0.226 1.973 sum -15.895 -4.974 -8.381 18.645 Atomic orbital electron populations 1.69737 1.07613 1.29088 1.35222 1.25984 0.94860 1.01555 0.92007 0.86195 0.80396 0.80112 0.79348 1.19225 1.20214 1.18514 1.19618 0.96398 0.90192 1.41804 0.90043 1.17589 0.90508 0.92278 0.86560 1.21643 1.03592 0.94079 1.11614 1.21461 0.90326 0.96679 0.95022 1.67198 1.13261 1.27528 1.19347 1.17994 0.85005 0.90802 0.93441 1.42540 1.20624 1.09951 1.58344 1.16076 0.80441 0.84744 0.79611 1.91014 1.67619 1.30526 1.51289 1.45216 1.17563 1.10475 1.67734 1.19929 0.87403 0.86201 1.00616 1.19861 0.95459 1.00255 0.93072 1.21209 0.92218 0.98763 1.00446 1.21061 0.97799 0.99364 0.94169 1.21481 0.98550 1.01887 0.94084 1.18456 0.92622 1.00452 0.82864 1.84844 1.92469 1.36061 1.17581 1.21422 0.97742 1.00797 0.94467 1.21784 1.00715 0.95615 1.09476 0.90826 0.88110 0.86086 0.76160 0.77427 0.90825 0.90660 0.85280 0.85357 0.85442 0.75419 0.85067 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.50 55.55 0.58 -18.81 16 2 C 0.07 1.79 5.31 -17.34 -0.09 1.69 16 3 Si 0.92 17.95 29.58 -169.99 -5.03 12.92 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -11.57 9.15 -37.65 -0.34 -11.92 16 8 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.14 3.70 5.65 -106.55 -0.60 3.09 16 10 C -0.29 -7.10 9.85 -39.07 -0.38 -7.49 16 11 C 0.12 2.92 11.10 -18.05 -0.20 2.72 16 12 N -0.55 -14.54 7.86 -12.76 -0.10 -14.64 16 13 C 0.35 8.78 7.42 -154.68 -1.15 7.63 16 14 N -0.67 -13.49 5.39 -15.86 -0.09 -13.58 16 15 C 0.69 13.60 8.52 -86.92 -0.74 12.86 16 16 O -0.53 -12.80 14.60 5.29 0.08 -12.72 16 17 N -0.75 -10.61 5.55 -66.42 -0.37 -10.98 16 18 C 0.18 2.23 5.80 -5.20 -0.03 2.20 16 19 C -0.09 -0.86 5.25 -104.65 -0.55 -1.41 16 20 C -0.11 -0.97 9.70 -39.56 -0.38 -1.35 16 21 C -0.11 -0.84 10.04 -39.61 -0.40 -1.23 16 22 C -0.14 -1.16 9.99 -39.43 -0.39 -1.55 16 23 C 0.10 0.92 6.70 -39.22 -0.26 0.65 16 24 O -0.50 -4.14 13.50 -19.41 -0.26 -4.40 16 25 C -0.13 -1.21 9.64 -39.43 -0.38 -1.59 16 26 C -0.25 -6.43 8.67 -38.46 -0.33 -6.76 16 27 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 30 H 0.40 6.73 8.72 -40.82 -0.36 6.37 16 31 H 0.39 4.60 8.48 -40.82 -0.35 4.25 16 32 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.39 1.31 9.06 45.56 0.41 1.73 16 38 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.14 3.53 5.81 -52.49 -0.30 3.23 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -33.75 343.86 -9.76 -43.51 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -3.52 Total: 15.94 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -6.24 Total: -2.44 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.03 Total: -58.00 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.18 Total: -17.12 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.75 -9.76 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.140 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds