Wall clock time and date at job start Tue Mar 31 2020 10:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48490 * 109.47249 * 269.99855 * 3 2 1 5 5 H 1.48505 * 109.46978 * 30.00061 * 3 2 1 6 6 H 1.48498 * 109.46840 * 149.99595 * 3 2 1 7 7 C 1.40030 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00389 * 192.10058 * 7 2 1 9 9 C 1.41541 * 119.99880 * 12.11135 * 7 2 1 10 10 C 1.41167 * 120.99685 * 201.12179 * 9 7 2 11 11 C 1.36591 * 119.12813 * 180.02562 * 10 9 7 12 12 N 1.32062 * 121.26005 * 359.73808 * 11 10 9 13 13 C 1.32496 * 122.22921 * 0.53195 * 12 11 10 14 14 N 1.39460 * 119.64908 * 179.74491 * 13 12 11 15 15 C 1.34777 * 120.00060 * 6.02087 * 14 13 12 16 16 O 1.21583 * 119.99994 * 355.45238 * 15 14 13 17 17 N 1.34777 * 120.00506 * 175.17765 * 15 14 13 18 18 C 1.46493 * 120.00657 * 180.27476 * 17 15 14 19 19 C 1.50695 * 109.47347 * 179.97438 * 18 17 15 20 20 C 1.38285 * 119.97489 * 269.72763 * 19 18 17 21 21 C 1.38244 * 120.11220 * 179.72660 * 20 19 18 22 22 C 1.38165 * 120.05415 * 0.54576 * 21 20 19 23 23 C 1.38714 * 119.94486 * 359.72817 * 22 21 20 24 24 O 1.35895 * 120.05477 * 179.97438 * 23 22 21 25 25 C 1.38129 * 119.97044 * 90.00127 * 19 18 17 26 26 C 1.38639 * 120.70084 * 359.47473 * 13 12 11 27 27 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.43442 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.36721 * 180.02562 * 11 10 9 30 30 H 0.97000 * 119.99920 * 186.01178 * 14 13 12 31 31 H 0.97000 * 119.99377 * 0.27335 * 17 15 14 32 32 H 1.08999 * 109.47124 * 300.00153 * 18 17 15 33 33 H 1.09002 * 109.46839 * 59.99810 * 18 17 15 34 34 H 1.08001 * 119.94444 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.97445 * 180.24779 * 21 20 19 36 36 H 1.08004 * 120.02835 * 179.74867 * 22 21 20 37 37 H 0.96708 * 114.00335 * 270.02474 * 24 23 22 38 38 H 1.08003 * 120.02484 * 359.97438 * 25 19 18 39 39 H 1.07998 * 120.66226 * 180.27064 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4000 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0695 -1.2231 0.1966 9 6 1.3235 -2.4249 -0.2561 10 6 1.8595 -3.6638 0.1571 11 6 1.1673 -4.8104 -0.1110 12 7 0.0079 -4.7791 -0.7427 13 6 -0.5402 -3.6466 -1.1579 14 7 -1.7647 -3.6766 -1.8248 15 6 -2.4425 -4.8361 -1.9373 16 8 -1.9493 -5.8705 -1.5309 17 7 -3.6692 -4.8483 -2.4953 18 6 -4.4085 -6.1076 -2.6122 19 6 -5.7416 -5.8488 -3.2654 20 6 -6.8449 -5.5475 -2.4882 21 6 -8.0680 -5.3040 -3.0849 22 6 -8.1933 -5.3724 -4.4592 23 6 -7.0893 -5.6800 -5.2407 24 8 -7.2101 -5.7484 -6.5925 25 6 -5.8616 -5.9184 -4.6397 26 6 0.0879 -2.4315 -0.9317 27 1 -0.4850 0.8400 0.0004 28 1 2.8049 -3.7045 0.6776 29 1 1.5736 -5.7602 0.2038 30 1 -2.1286 -2.8630 -2.2074 31 1 -4.0627 -4.0231 -2.8195 32 1 -3.8364 -6.8097 -3.2187 33 1 -4.5664 -6.5296 -1.6196 34 1 -6.7501 -5.4983 -1.4135 35 1 -8.9274 -5.0649 -2.4760 36 1 -9.1499 -5.1861 -4.9246 37 1 -7.4418 -6.6273 -6.9228 38 1 -5.0005 -6.1578 -5.2460 39 1 -0.3616 -1.5084 -1.2666 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365071631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:06 Heat of formation + Delta-G solvation = -27.716631 kcal Electronic energy + Delta-G solvation = -24005.363631 eV Core-core repulsion = 20298.324641 eV Total energy + Delta-G solvation = -3707.038990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46913 -40.72513 -39.75881 -37.93250 -36.23792 -35.62646 -35.48623 -32.54036 -32.24689 -30.84050 -30.21416 -27.93405 -27.09254 -23.84087 -23.58158 -23.47886 -22.40300 -21.72753 -19.84831 -19.41037 -18.90198 -17.82826 -17.32160 -17.07436 -17.00481 -16.34145 -16.24352 -16.07223 -15.98801 -15.77346 -15.07699 -14.78474 -14.67130 -14.50455 -14.29693 -13.94002 -13.75206 -13.22867 -13.12739 -12.86531 -12.79919 -12.68018 -12.47949 -12.04078 -11.87407 -11.52922 -11.45622 -11.32090 -11.18343 -10.14042 -9.96102 -9.91041 -9.65290 -9.57431 -8.81724 -8.57478 -6.56981 0.14050 0.30559 0.85554 1.02586 1.42186 1.55173 1.59387 1.69103 2.20712 2.26953 2.64830 2.85243 3.20193 3.32237 3.63410 3.79739 3.91408 4.16072 4.19097 4.30545 4.34952 4.58749 4.65457 4.76072 4.86642 4.90214 4.95338 5.00500 5.12002 5.28487 5.38767 5.42124 5.42937 5.52730 5.55171 5.67238 5.83032 5.85720 6.00874 6.27684 6.58587 6.81023 6.84851 6.84947 6.97606 7.60830 7.91699 8.27490 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.002563 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.159553 B =10923.321773 C =11824.504532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.109 3.891 10 C -0.298 4.298 11 C 0.113 3.887 12 N -0.581 5.581 13 C 0.351 3.649 14 N -0.660 5.660 15 C 0.690 3.310 16 O -0.579 6.579 17 N -0.728 5.728 18 C 0.185 3.815 19 C -0.091 4.091 20 C -0.114 4.114 21 C -0.102 4.102 22 C -0.141 4.141 23 C 0.096 3.904 24 O -0.512 6.512 25 C -0.136 4.136 26 C -0.267 4.267 27 H 0.292 0.708 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.419 0.581 31 H 0.407 0.593 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.410 0.590 38 H 0.128 0.872 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.448 -4.605 -8.915 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.322 4.322 11 C -0.041 4.041 12 N -0.301 5.301 13 C 0.123 3.877 14 N -0.309 5.309 15 C 0.390 3.610 16 O -0.453 6.453 17 N -0.386 5.386 18 C 0.061 3.939 19 C -0.092 4.092 20 C -0.132 4.132 21 C -0.120 4.120 22 C -0.159 4.159 23 C 0.051 3.949 24 O -0.325 6.325 25 C -0.155 4.155 26 C -0.293 4.293 27 H 0.103 0.897 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.256 0.744 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.269 0.731 38 H 0.146 0.854 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.593 -5.678 -8.693 20.428 hybrid contribution 0.506 1.530 -0.120 1.616 sum -17.087 -4.149 -8.813 19.668 Atomic orbital electron populations 1.69767 1.08940 1.30753 1.34247 1.26865 0.95699 1.04665 0.90892 0.85057 0.78913 0.75292 0.79589 1.18532 1.19116 1.18272 1.19910 0.96777 0.91079 1.42966 0.89787 1.18039 0.91327 0.93382 0.87172 1.21827 1.04368 0.93858 1.12163 1.21908 0.90000 0.97778 0.94365 1.67320 1.14118 1.28186 1.20471 1.18201 0.86095 0.90325 0.93033 1.42430 1.19533 1.11092 1.57893 1.16232 0.81503 0.83765 0.79494 1.90978 1.69069 1.31935 1.53367 1.45044 1.15617 1.12062 1.65856 1.19979 0.88356 0.84998 1.00537 1.19598 0.94450 1.01914 0.93221 1.21350 0.92380 0.98681 1.00808 1.21344 0.98044 0.98220 0.94380 1.21749 0.99034 1.00908 0.94239 1.18555 0.92635 1.00334 0.83327 1.84789 1.92555 1.37967 1.17177 1.21447 0.98229 1.01430 0.94358 1.21772 1.01164 0.95816 1.10591 0.89718 0.86640 0.83541 0.74372 0.75695 0.91523 0.91156 0.84653 0.82874 0.83547 0.73054 0.85388 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.55 10.50 21.84 0.23 -39.32 16 2 C 0.04 1.69 5.31 85.29 0.45 2.14 16 3 Si 0.99 35.87 29.58 68.60 2.03 37.90 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.48 -24.79 9.15 23.52 0.22 -24.57 16 8 H 0.08 4.17 7.88 -2.91 -0.02 4.15 16 9 C 0.11 5.92 5.65 -21.11 -0.12 5.80 16 10 C -0.30 -15.09 9.85 22.60 0.22 -14.87 16 11 C 0.11 5.61 11.10 84.27 0.94 6.54 16 12 N -0.58 -31.05 7.86 -194.27 -1.53 -32.57 16 13 C 0.35 17.75 7.42 132.76 0.98 18.73 16 14 N -0.66 -26.98 5.39 -322.36 -1.74 -28.72 16 15 C 0.69 27.38 8.52 179.05 1.53 28.91 16 16 O -0.58 -28.33 14.60 -3.98 -0.06 -28.39 16 17 N -0.73 -20.30 5.55 -482.32 -2.68 -22.98 16 18 C 0.18 4.50 5.80 85.63 0.50 5.00 16 19 C -0.09 -1.74 5.25 -19.88 -0.10 -1.84 16 20 C -0.11 -1.84 9.70 22.28 0.22 -1.63 16 21 C -0.10 -1.34 10.04 22.25 0.22 -1.12 16 22 C -0.14 -1.94 9.99 22.37 0.22 -1.72 16 23 C 0.10 1.59 6.70 22.51 0.15 1.74 16 24 O -0.51 -7.59 13.50 -92.37 -1.25 -8.84 16 25 C -0.14 -2.50 9.64 22.37 0.22 -2.29 16 26 C -0.27 -14.05 8.67 23.00 0.20 -13.85 16 27 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 28 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 29 H 0.15 6.31 8.06 -2.91 -0.02 6.28 16 30 H 0.42 13.95 8.72 -92.71 -0.81 13.14 16 31 H 0.41 9.13 8.48 -92.71 -0.79 8.34 16 32 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.41 2.03 9.06 -74.05 -0.67 1.36 16 38 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.14 7.07 5.81 -2.91 -0.02 7.06 16 Total: -1.00 -73.11 343.86 -0.28 -73.39 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -1.13 Total: 42.55 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.84 Total: 6.97 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -5.71 Total: -123.59 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.31 Total: -37.22 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.90 kcal Total: -73.11 -0.28 -73.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365071631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.676 kcal (2) G-P(sol) polarization free energy of solvation -73.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds