Wall clock time and date at job start Tue Mar 31 2020 10:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32279 * 120.49436 * 2 1 4 4 C 1.31781 * 120.89482 * 179.97438 * 3 2 1 5 5 N 1.31811 * 121.92414 * 359.97438 * 4 3 2 6 6 C 1.32253 * 120.88962 * 0.02562 * 5 4 3 7 7 C 1.39221 * 120.48946 * 180.23613 * 2 1 3 8 8 N 1.39973 * 120.87261 * 0.02562 * 7 2 1 9 9 C 1.34769 * 120.00318 * 204.74435 * 8 7 2 10 10 O 1.21285 * 120.00150 * 5.64684 * 9 8 7 11 11 C 1.50704 * 120.00410 * 185.64538 * 9 8 7 12 12 C 1.50696 * 109.47452 * 180.02562 * 11 9 8 13 13 C 1.38301 * 119.93095 * 269.73165 * 12 11 9 14 14 C 1.38101 * 120.06929 * 179.72602 * 13 12 11 15 15 C 1.38880 * 119.92703 * 0.56364 * 14 13 12 16 16 O 1.35751 * 120.07021 * 179.68506 * 15 14 13 17 17 C 1.34833 * 117.00291 * 185.25491 * 16 15 14 18 18 H 1.07997 * 120.00141 * 354.97348 * 17 16 15 19 19 C 1.38655 * 119.99969 * 174.97285 * 17 16 15 20 20 N 1.31560 * 119.99988 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47207 * 90.00087 * 21 19 17 23 23 H 1.48494 * 109.46981 * 210.00258 * 21 19 17 24 24 H 1.48499 * 109.46619 * 329.99910 * 21 19 17 25 25 C 1.38878 * 119.86661 * 359.70892 * 15 14 13 26 26 C 1.38103 * 119.92685 * 359.97438 * 25 15 14 27 27 H 1.09010 * 109.47137 * 89.99723 * 1 2 3 28 28 H 1.08998 * 109.47710 * 209.99246 * 1 2 3 29 29 H 1.09004 * 109.47383 * 330.00003 * 1 2 3 30 30 H 1.08000 * 119.04089 * 180.02562 * 4 3 2 31 31 H 1.08009 * 120.49058 * 179.97438 * 6 5 4 32 32 H 0.97005 * 119.99452 * 24.74484 * 8 7 2 33 33 H 1.09004 * 109.46964 * 300.00226 * 11 9 8 34 34 H 1.09003 * 109.46888 * 60.00220 * 11 9 8 35 35 H 1.07999 * 119.96880 * 359.97369 * 13 12 11 36 36 H 1.08000 * 120.03960 * 180.26789 * 14 13 12 37 37 H 0.97003 * 119.99799 * 179.97438 * 20 19 17 38 38 H 1.07999 * 120.03806 * 179.97438 * 25 15 14 39 39 H 1.07998 * 119.96484 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1398 0.0000 4 6 3.4960 1.1490 0.0005 5 7 4.2008 0.0352 0.0015 6 6 3.6048 -1.1454 0.0016 7 6 2.2133 -1.1997 -0.0049 8 7 1.5425 -2.4282 -0.0105 9 6 2.1496 -3.5297 0.4734 10 8 3.2351 -3.4391 1.0067 11 6 1.4797 -4.8742 0.3521 12 6 2.3598 -5.9315 0.9674 13 6 3.2939 -6.5904 0.1890 14 6 4.1058 -7.5558 0.7512 15 6 3.9755 -7.8728 2.0971 16 8 4.7677 -8.8258 2.6512 17 6 4.5164 -9.1616 3.9326 18 1 3.7690 -8.6224 4.4956 19 6 5.2175 -10.1994 4.5276 20 7 6.1283 -10.8561 3.8420 21 14 4.8687 -10.6652 6.3027 22 1 3.7995 -11.6949 6.3434 23 1 6.1033 -11.2087 6.9235 24 1 4.4262 -9.4621 7.0522 25 6 3.0326 -7.2133 2.8748 26 6 2.2282 -6.2443 2.3081 27 1 -0.3634 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 4.0136 2.0969 0.0009 31 1 4.1887 -2.0541 0.0020 32 1 0.6405 -2.4866 -0.3628 33 1 0.5220 -4.8513 0.8722 34 1 1.3159 -5.1049 -0.7007 35 1 3.3913 -6.3471 -0.8587 36 1 4.8381 -8.0670 0.1439 37 1 6.6190 -11.5818 4.2584 38 1 2.9286 -7.4579 3.9215 39 1 1.4945 -5.7313 2.9122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412328788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:00 Heat of formation + Delta-G solvation = 14.260289 kcal Electronic energy + Delta-G solvation = -24189.783605 eV Core-core repulsion = 20484.564871 eV Total energy + Delta-G solvation = -3705.218734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65006 -39.94070 -38.88120 -36.66750 -35.69214 -34.41399 -32.60800 -31.94371 -30.88775 -30.19250 -28.77764 -26.83031 -25.29259 -24.33366 -23.13736 -22.01956 -21.41677 -20.37123 -18.53681 -18.01983 -17.65363 -17.02728 -16.94529 -16.63673 -15.64851 -15.15727 -14.77419 -14.51988 -14.36541 -14.14078 -13.90642 -13.53921 -13.51100 -13.49458 -13.39764 -12.85963 -12.74815 -12.64198 -12.03313 -11.67425 -11.61812 -11.35803 -11.30337 -10.91453 -10.82792 -10.77457 -10.65915 -10.44424 -10.07434 -9.42703 -9.35684 -8.84386 -8.65115 -8.19411 -7.21465 -6.46572 -4.05207 0.58546 0.81877 2.13714 2.21492 2.40595 2.73785 3.12502 3.12853 3.17911 3.54599 3.75200 3.95620 4.01075 4.15833 4.35311 4.54842 4.74206 4.91151 5.03692 5.05872 5.07607 5.11377 5.20684 5.27057 5.44772 5.52081 5.58461 5.66901 5.76293 5.79485 6.18248 6.29635 6.37507 6.65269 6.74995 6.85803 6.94947 7.03935 7.19775 7.31751 7.42190 7.79514 7.83898 7.89670 7.98466 8.98984 9.68665 10.71332 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002441 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.021344 B =11466.593826 C =11626.769331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.138 3.862 3 N -0.503 5.503 4 C 0.266 3.734 5 N -0.501 5.501 6 C 0.140 3.860 7 C 0.055 3.945 8 N -0.668 5.668 9 C 0.508 3.492 10 O -0.494 6.494 11 C -0.075 4.075 12 C -0.179 4.179 13 C -0.058 4.058 14 C -0.192 4.192 15 C 0.159 3.841 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.233 4.233 26 C -0.054 4.054 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.196 0.804 31 H 0.188 0.812 32 H 0.413 0.587 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.832 17.901 -9.197 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.011 4.011 3 N -0.217 5.217 4 C -0.022 4.022 5 N -0.215 5.215 6 C -0.028 4.028 7 C -0.046 4.046 8 N -0.315 5.315 9 C 0.297 3.703 10 O -0.366 6.366 11 C -0.114 4.114 12 C -0.180 4.180 13 C -0.076 4.076 14 C -0.211 4.211 15 C 0.105 3.895 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.252 4.252 26 C -0.072 4.072 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.213 0.787 31 H 0.205 0.795 32 H 0.250 0.750 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.196 18.395 -8.838 23.775 hybrid contribution -0.994 -0.910 0.809 1.572 sum -13.190 17.485 -8.029 23.327 Atomic orbital electron populations 1.20732 0.87775 1.04318 1.03627 1.21512 0.97531 0.86938 0.95149 1.68190 1.10638 1.28975 1.13940 1.24869 0.86559 0.97301 0.93477 1.68491 1.41392 0.98696 1.12906 1.23788 0.90600 0.97257 0.91189 1.19507 0.94459 0.87279 1.03326 1.43697 1.19242 1.05972 1.62581 1.21560 0.86390 0.85761 0.76616 1.90729 1.20633 1.85635 1.39594 1.20402 0.98969 0.88943 1.03117 1.18551 1.02968 1.01879 0.94639 1.20394 0.94255 0.94873 0.98077 1.20160 1.04444 1.03418 0.93062 1.19404 0.89109 0.88983 0.92049 1.83978 1.48277 1.47427 1.28212 1.21338 1.23219 1.17042 0.85207 0.89031 1.25301 0.95679 0.95277 1.00258 1.70042 1.21966 1.20650 1.36967 0.85706 0.78219 0.79138 0.80344 1.19855 1.20225 1.19180 1.21107 1.01192 1.01939 1.00989 1.20503 0.97502 0.95716 0.93512 0.89616 0.90443 0.89382 0.78716 0.79546 0.75004 0.88442 0.88229 0.87301 0.86464 0.91978 0.85540 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.70 36.00 0.35 -0.24 16 2 C 0.14 1.33 6.84 -82.04 -0.56 0.77 16 3 N -0.50 -5.45 10.37 -10.66 -0.11 -5.56 16 4 C 0.27 2.89 12.28 -92.15 -1.13 1.76 16 5 N -0.50 -6.53 10.43 -14.43 -0.15 -6.68 16 6 C 0.14 1.84 10.00 -16.99 -0.17 1.67 16 7 C 0.05 0.59 6.45 -83.40 -0.54 0.05 16 8 N -0.67 -5.70 5.02 -9.68 -0.05 -5.75 16 9 C 0.51 5.98 7.65 -10.99 -0.08 5.90 16 10 O -0.49 -8.18 13.26 5.55 0.07 -8.10 16 11 C -0.07 -0.77 5.83 -29.04 -0.17 -0.94 16 12 C -0.18 -2.85 4.38 -104.58 -0.46 -3.31 16 13 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 14 C -0.19 -4.03 9.99 -39.39 -0.39 -4.43 16 15 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 16 O -0.18 -5.04 9.76 0.04 0.00 -5.04 16 17 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 21 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 26 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 27 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.08 0.31 7.11 -51.93 -0.37 -0.06 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.19 2.70 5.90 -52.48 -0.31 2.39 16 32 H 0.41 1.89 7.55 -40.82 -0.31 1.59 16 33 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -35.14 341.08 -7.78 -42.91 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.07 Total: 5.17 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -4.35 Total: -13.05 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.45 Total: -42.55 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.14 -7.78 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412328788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.173 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds