Wall clock time and date at job start Tue Mar 31 2020 10:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32279 * 120.49436 * 2 1 4 4 C 1.31781 * 120.89482 * 179.97438 * 3 2 1 5 5 N 1.31811 * 121.92414 * 359.97438 * 4 3 2 6 6 C 1.32253 * 120.88962 * 0.02562 * 5 4 3 7 7 C 1.39221 * 120.48946 * 180.23613 * 2 1 3 8 8 N 1.39973 * 120.87261 * 0.02562 * 7 2 1 9 9 C 1.34769 * 120.00318 * 204.74435 * 8 7 2 10 10 O 1.21285 * 120.00150 * 5.64684 * 9 8 7 11 11 C 1.50704 * 120.00410 * 185.64538 * 9 8 7 12 12 C 1.50696 * 109.47452 * 180.02562 * 11 9 8 13 13 C 1.38301 * 119.93095 * 269.73165 * 12 11 9 14 14 C 1.38101 * 120.06929 * 179.72602 * 13 12 11 15 15 C 1.38880 * 119.92703 * 0.56364 * 14 13 12 16 16 O 1.35751 * 120.07021 * 179.68506 * 15 14 13 17 17 C 1.34833 * 117.00291 * 185.25491 * 16 15 14 18 18 H 1.07997 * 120.00141 * 354.97348 * 17 16 15 19 19 C 1.38655 * 119.99969 * 174.97285 * 17 16 15 20 20 N 1.31560 * 119.99988 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47207 * 90.00087 * 21 19 17 23 23 H 1.48494 * 109.46981 * 210.00258 * 21 19 17 24 24 H 1.48499 * 109.46619 * 329.99910 * 21 19 17 25 25 C 1.38878 * 119.86661 * 359.70892 * 15 14 13 26 26 C 1.38103 * 119.92685 * 359.97438 * 25 15 14 27 27 H 1.09010 * 109.47137 * 89.99723 * 1 2 3 28 28 H 1.08998 * 109.47710 * 209.99246 * 1 2 3 29 29 H 1.09004 * 109.47383 * 330.00003 * 1 2 3 30 30 H 1.08000 * 119.04089 * 180.02562 * 4 3 2 31 31 H 1.08009 * 120.49058 * 179.97438 * 6 5 4 32 32 H 0.97005 * 119.99452 * 24.74484 * 8 7 2 33 33 H 1.09004 * 109.46964 * 300.00226 * 11 9 8 34 34 H 1.09003 * 109.46888 * 60.00220 * 11 9 8 35 35 H 1.07999 * 119.96880 * 359.97369 * 13 12 11 36 36 H 1.08000 * 120.03960 * 180.26789 * 14 13 12 37 37 H 0.97003 * 119.99799 * 179.97438 * 20 19 17 38 38 H 1.07999 * 120.03806 * 179.97438 * 25 15 14 39 39 H 1.07998 * 119.96484 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1398 0.0000 4 6 3.4960 1.1490 0.0005 5 7 4.2008 0.0352 0.0015 6 6 3.6048 -1.1454 0.0016 7 6 2.2133 -1.1997 -0.0049 8 7 1.5425 -2.4282 -0.0105 9 6 2.1496 -3.5297 0.4734 10 8 3.2351 -3.4391 1.0067 11 6 1.4797 -4.8742 0.3521 12 6 2.3598 -5.9315 0.9674 13 6 3.2939 -6.5904 0.1890 14 6 4.1058 -7.5558 0.7512 15 6 3.9755 -7.8728 2.0971 16 8 4.7677 -8.8258 2.6512 17 6 4.5164 -9.1616 3.9326 18 1 3.7690 -8.6224 4.4956 19 6 5.2175 -10.1994 4.5276 20 7 6.1283 -10.8561 3.8420 21 14 4.8687 -10.6652 6.3027 22 1 3.7995 -11.6949 6.3434 23 1 6.1033 -11.2087 6.9235 24 1 4.4262 -9.4621 7.0522 25 6 3.0326 -7.2133 2.8748 26 6 2.2282 -6.2443 2.3081 27 1 -0.3634 0.0000 -1.0278 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3634 0.8900 0.5138 30 1 4.0136 2.0969 0.0009 31 1 4.1887 -2.0541 0.0020 32 1 0.6405 -2.4866 -0.3628 33 1 0.5220 -4.8513 0.8722 34 1 1.3159 -5.1049 -0.7007 35 1 3.3913 -6.3471 -0.8587 36 1 4.8381 -8.0670 0.1439 37 1 6.6190 -11.5818 4.2584 38 1 2.9286 -7.4579 3.9215 39 1 1.4945 -5.7313 2.9122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412328788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:00 Heat of formation + Delta-G solvation = -10.228362 kcal Electronic energy + Delta-G solvation = -24190.845513 eV Core-core repulsion = 20484.564871 eV Total energy + Delta-G solvation = -3706.280642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48019 -41.05560 -40.41532 -38.28121 -36.59585 -35.22667 -34.41547 -33.21552 -31.88688 -31.74364 -29.50238 -28.20734 -27.08368 -25.29263 -23.89547 -23.63266 -22.65595 -21.54981 -19.85531 -19.40997 -18.83571 -18.46970 -17.77516 -17.50905 -16.66072 -16.40687 -16.24956 -15.97801 -15.73220 -15.53659 -15.19919 -14.99515 -14.68466 -14.41165 -14.18020 -14.10391 -13.88963 -13.61262 -13.31683 -12.99079 -12.87844 -12.51450 -12.44632 -12.32254 -12.27177 -12.21500 -12.12272 -11.58067 -11.17817 -11.08985 -10.78343 -10.27618 -9.75362 -9.45294 -8.90925 -8.48006 -6.16179 -0.22782 -0.02540 0.62735 0.65548 1.33584 1.42896 1.51393 1.53509 1.87915 2.17113 2.72757 2.83034 3.08926 3.16038 3.25371 3.35756 3.52527 3.65611 3.83527 4.05605 4.06558 4.20029 4.33267 4.49061 4.55022 4.60366 4.70605 4.72321 4.76106 4.81610 4.96245 5.09638 5.14498 5.15971 5.31291 5.49172 5.57182 5.72686 5.76927 5.93798 6.02774 6.21225 6.32527 6.96691 7.02269 7.08049 7.78396 8.75491 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002441 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.021344 B =11466.593826 C =11626.769331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.146 3.854 3 N -0.514 5.514 4 C 0.262 3.738 5 N -0.530 5.530 6 C 0.115 3.885 7 C 0.050 3.950 8 N -0.643 5.643 9 C 0.512 3.488 10 O -0.551 6.551 11 C -0.071 4.071 12 C -0.149 4.149 13 C -0.055 4.055 14 C -0.209 4.209 15 C 0.112 3.888 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.019 2.981 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.247 4.247 26 C -0.057 4.057 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.222 0.778 31 H 0.166 0.834 32 H 0.436 0.564 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.110 0.890 37 H 0.273 0.727 38 H 0.115 0.885 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 20.569 -10.065 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.004 4.004 3 N -0.228 5.228 4 C -0.026 4.026 5 N -0.245 5.245 6 C -0.052 4.052 7 C -0.051 4.051 8 N -0.291 5.291 9 C 0.302 3.698 10 O -0.427 6.427 11 C -0.110 4.110 12 C -0.151 4.151 13 C -0.073 4.073 14 C -0.228 4.228 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.266 4.266 26 C -0.075 4.075 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.238 0.762 31 H 0.183 0.817 32 H 0.278 0.722 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.634 21.119 -9.764 28.601 hybrid contribution 0.151 -1.377 0.800 1.600 sum -16.483 19.742 -8.964 27.236 Atomic orbital electron populations 1.20934 0.84393 1.05522 1.05529 1.22218 0.99505 0.85962 0.92714 1.68318 1.10542 1.29566 1.14407 1.25414 0.86994 0.97641 0.92538 1.68450 1.42462 0.99315 1.14248 1.23606 0.92012 0.96794 0.92838 1.19456 0.93603 0.88476 1.03558 1.43365 1.19856 1.04425 1.61473 1.21692 0.85552 0.86750 0.75787 1.90759 1.23153 1.86400 1.42389 1.20555 0.98861 0.85689 1.05869 1.19215 1.01258 1.00902 0.93679 1.20909 0.93006 0.93112 1.00226 1.20458 1.05459 1.04751 0.92144 1.19987 0.90541 0.89563 0.93691 1.83938 1.51134 1.50273 1.28793 1.21819 1.23749 1.17672 0.85735 0.88214 1.26614 0.95251 0.94897 1.05398 1.70191 1.24186 1.22152 1.39476 0.84579 0.78425 0.79257 0.73890 1.18477 1.19618 1.17829 1.21236 1.01698 1.03097 1.00563 1.20964 0.97201 0.94418 0.94946 0.87118 0.88286 0.89159 0.76207 0.81675 0.72222 0.84096 0.83926 0.83255 0.87206 0.91840 0.86699 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.70 71.23 0.69 0.05 16 2 C 0.15 2.32 6.84 42.73 0.29 2.61 16 3 N -0.51 -9.93 10.37 -187.64 -1.95 -11.88 16 4 C 0.26 5.36 12.28 180.88 2.22 7.58 16 5 N -0.53 -13.72 10.43 -199.57 -2.08 -15.80 16 6 C 0.11 2.96 10.00 84.87 0.85 3.81 16 7 C 0.05 0.94 6.45 38.32 0.25 1.18 16 8 N -0.64 -8.01 5.02 -302.92 -1.52 -9.54 16 9 C 0.51 9.91 7.65 87.66 0.67 10.58 16 10 O -0.55 -17.27 13.26 -3.05 -0.04 -17.31 16 11 C -0.07 -1.02 5.83 29.10 0.17 -0.85 16 12 C -0.15 -4.20 4.38 -19.84 -0.09 -4.29 16 13 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 14 C -0.21 -9.07 9.99 22.39 0.22 -8.85 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.56 9.76 -22.78 -0.22 -14.78 16 17 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16 18 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 20 N -0.92 -57.75 13.67 21.61 0.30 -57.45 16 21 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 25 C -0.25 -10.96 9.17 22.39 0.21 -10.75 16 26 C -0.06 -1.91 9.69 22.25 0.22 -1.70 16 27 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 28 H 0.10 0.19 7.11 -2.39 -0.02 0.18 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.17 4.92 5.90 -2.91 -0.02 4.90 16 32 H 0.44 1.23 7.55 -92.70 -0.70 0.53 16 33 H 0.14 1.01 8.08 -2.38 -0.02 0.99 16 34 H 0.14 1.02 8.08 -2.39 -0.02 1.01 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 39 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -87.41 341.08 4.10 -83.31 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.41 Total: 19.03 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 7.17 Total: -21.31 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -5.25 Total: -94.67 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.26 Total: -32.09 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -87.41 4.10 -83.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412328788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.085 kcal (2) G-P(sol) polarization free energy of solvation -87.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds