Wall clock time and date at job start Tue Mar 31 2020 10:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.41616 * 2 1 4 4 C 1.39372 * 118.35285 * 180.02562 * 3 2 1 5 5 O 1.35518 * 120.51265 * 180.02562 * 4 3 2 6 6 N 1.32822 * 118.97650 * 359.73793 * 4 3 2 7 7 C 1.31771 * 120.71903 * 0.53631 * 6 4 3 8 8 C 1.50700 * 119.09443 * 179.72441 * 7 6 4 9 9 N 1.46497 * 109.46932 * 269.73169 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 N 1.31786 * 121.80727 * 359.44788 * 7 6 4 27 27 H 1.08995 * 109.47328 * 269.97466 * 1 2 3 28 28 H 1.09005 * 109.47444 * 29.97691 * 1 2 3 29 29 H 1.09005 * 109.47564 * 149.97457 * 1 2 3 30 30 H 1.08004 * 120.81836 * 0.02562 * 3 2 1 31 31 H 0.96694 * 114.00448 * 89.99660 * 5 4 3 32 32 H 1.08997 * 109.47118 * 149.73136 * 8 7 6 33 33 H 1.09003 * 109.46911 * 29.72830 * 8 7 6 34 34 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 36 36 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 37 37 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 38 38 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 39 39 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5996 1.1419 -0.0005 5 8 4.3292 2.2839 0.0000 6 7 4.2008 -0.0425 0.0043 7 6 3.4954 -1.1555 -0.0011 8 6 4.2154 -2.4794 -0.0017 9 7 4.4482 -2.9080 -1.3831 10 6 5.0816 -4.0717 -1.6300 11 8 5.4603 -4.7657 -0.7059 12 6 5.3163 -4.5028 -3.0201 13 6 4.8325 -3.7433 -4.0820 14 6 5.0499 -4.1542 -5.3836 15 6 5.7546 -5.3202 -5.6500 16 6 6.2504 -6.0886 -4.6218 17 6 6.0429 -5.6925 -3.2876 18 6 6.5460 -6.4724 -2.2276 19 1 6.8930 -5.9948 -1.3232 20 6 6.5963 -7.8691 -2.3468 21 7 5.8613 -8.4752 -3.2406 22 14 7.7142 -8.8625 -1.2275 23 1 9.0481 -9.0087 -1.8635 24 1 7.8604 -8.1624 0.0739 25 1 7.1228 -10.2060 -1.0030 26 7 2.1776 -1.1426 -0.0006 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6870 2.1388 0.0004 31 1 4.5413 2.6148 0.8834 32 1 3.6074 -3.2238 0.5122 33 1 5.1711 -2.3734 0.5118 34 1 4.1470 -2.3538 -2.1201 35 1 4.2830 -2.8339 -3.8881 36 1 4.6678 -3.5619 -6.2019 37 1 5.9158 -5.6265 -6.6730 38 1 6.7978 -6.9940 -4.8384 39 1 5.2252 -7.9690 -3.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413237258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:26 Heat of formation + Delta-G solvation = -10.553674 kcal Electronic energy + Delta-G solvation = -24632.521855 eV Core-core repulsion = 20926.227107 eV Total energy + Delta-G solvation = -3706.294748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53227 -39.01489 -38.05617 -36.99633 -35.03882 -34.08475 -33.56312 -31.99195 -30.15025 -29.39262 -28.83530 -27.27349 -25.12677 -23.51031 -22.73000 -21.89816 -20.86136 -19.59121 -19.08749 -18.17534 -18.00964 -16.71799 -16.26796 -15.83442 -15.27217 -14.85827 -14.67996 -14.44976 -14.18271 -14.05005 -13.84193 -13.64104 -13.20328 -12.98610 -12.78291 -12.62643 -12.42976 -12.21894 -12.13145 -11.68192 -11.11752 -10.91254 -10.88198 -10.73254 -10.59748 -10.34803 -10.15123 -9.84859 -9.58739 -9.55368 -9.06166 -8.53032 -8.45125 -7.77671 -7.59040 -7.12450 -4.44524 0.44920 0.67268 2.25038 2.75487 2.95352 3.20300 3.22424 3.33514 3.44474 3.56760 3.94879 4.05985 4.08022 4.12907 4.56932 4.63655 4.66047 4.84814 5.03322 5.15137 5.26542 5.47485 5.49453 5.71937 5.78934 5.88533 5.97871 6.07918 6.18838 6.49582 6.67346 6.73315 6.95780 6.99771 7.01709 7.29152 7.51008 7.61972 7.73801 7.81771 7.90310 8.09722 8.22514 8.33045 8.74675 8.88096 9.32159 10.06442 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003239 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.989867 B = 8641.258352 C = 9256.614376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.188 3.812 3 C -0.245 4.245 4 C 0.362 3.638 5 O -0.475 6.475 6 N -0.528 5.528 7 C 0.342 3.658 8 C 0.195 3.805 9 N -0.740 5.740 10 C 0.569 3.431 11 O -0.534 6.534 12 C -0.264 4.264 13 C -0.042 4.042 14 C -0.259 4.259 15 C -0.075 4.075 16 C -0.200 4.200 17 C 0.122 3.878 18 C -0.466 4.466 19 H 0.107 0.893 20 C 0.031 3.969 21 N -0.794 5.794 22 Si 1.073 2.927 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.277 1.277 26 N -0.509 5.509 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.408 0.592 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.392 0.608 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 16.812 6.655 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.043 3.957 3 C -0.268 4.268 4 C 0.174 3.826 5 O -0.283 6.283 6 N -0.253 5.253 7 C 0.074 3.926 8 C 0.069 3.931 9 N -0.396 5.396 10 C 0.363 3.637 11 O -0.411 6.411 12 C -0.269 4.269 13 C -0.061 4.061 14 C -0.278 4.278 15 C -0.094 4.094 16 C -0.220 4.220 17 C 0.117 3.883 18 C -0.493 4.493 19 H 0.125 0.875 20 C -0.190 4.190 21 N -0.417 5.417 22 Si 0.896 3.104 23 H -0.201 1.201 24 H -0.197 1.197 25 H -0.202 1.202 26 N -0.226 5.226 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.267 0.733 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.184 13.900 7.053 17.163 hybrid contribution -1.139 3.123 -0.450 3.355 sum -8.323 17.023 6.603 20.066 Atomic orbital electron populations 1.20819 0.87232 1.04478 1.03924 1.21744 0.97921 0.87324 0.88742 1.22799 0.94629 1.01370 1.08007 1.19464 0.87152 0.85510 0.90467 1.84736 1.73893 1.35342 1.34286 1.67859 1.43134 0.98536 1.15773 1.23123 0.86154 0.93513 0.89795 1.19787 0.99250 0.87281 0.86735 1.45869 1.63591 1.24308 1.05863 1.18347 0.76373 0.78950 0.90011 1.90690 1.51165 1.52986 1.46303 1.19320 1.13287 1.04276 0.89974 1.20705 0.96136 0.96156 0.93093 1.20232 1.11687 1.00794 0.95111 1.20741 0.96753 0.94611 0.97280 1.21258 1.06182 1.01953 0.92563 1.17490 0.87613 0.90643 0.92510 1.21237 1.31667 0.93376 1.03017 0.87534 1.27275 0.97565 0.96689 0.97520 1.70356 1.14354 1.42064 1.14954 0.83517 0.75471 0.75554 0.75810 1.20082 1.19689 1.20167 1.68216 1.09429 1.30211 1.14740 0.89391 0.89947 0.89373 0.82962 0.73303 0.88985 0.89175 0.77415 0.89367 0.88926 0.88848 0.87459 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.22 36.00 0.37 -0.33 16 2 C 0.19 1.94 6.82 -82.31 -0.56 1.37 16 3 C -0.24 -2.23 9.81 -39.16 -0.38 -2.62 16 4 C 0.36 4.11 7.83 -16.70 -0.13 3.98 16 5 O -0.48 -4.35 13.58 -18.25 -0.25 -4.60 16 6 N -0.53 -7.56 10.36 -10.78 -0.11 -7.68 16 7 C 0.34 5.05 7.01 -157.22 -1.10 3.95 16 8 C 0.20 3.25 6.10 -5.20 -0.03 3.22 16 9 N -0.74 -14.14 5.50 -62.56 -0.34 -14.48 16 10 C 0.57 13.53 7.73 -12.52 -0.10 13.43 16 11 O -0.53 -14.20 13.55 5.26 0.07 -14.13 16 12 C -0.26 -6.57 5.92 -104.37 -0.62 -7.19 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 14 C -0.26 -5.58 10.03 -39.37 -0.39 -5.97 16 15 C -0.07 -1.69 10.01 -39.60 -0.40 -2.08 16 16 C -0.20 -5.05 7.86 -38.88 -0.31 -5.36 16 17 C 0.12 3.29 5.18 -106.54 -0.55 2.73 16 18 C -0.47 -12.92 7.66 -37.81 -0.29 -13.21 16 19 H 0.11 3.08 5.91 -52.48 -0.31 2.77 16 20 C 0.03 0.81 5.04 -17.30 -0.09 0.73 16 21 N -0.79 -21.40 12.57 55.56 0.70 -20.71 16 22 Si 1.07 22.73 29.98 -169.99 -5.10 17.63 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 N -0.51 -6.92 10.27 -7.05 -0.07 -6.99 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.41 1.48 9.06 45.56 0.41 1.90 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.39 6.94 6.50 -40.82 -0.27 6.67 16 35 H 0.09 1.66 6.41 -52.49 -0.34 1.33 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.11 2.75 6.93 -52.49 -0.36 2.38 16 39 H 0.30 8.24 6.54 -40.82 -0.27 7.97 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -33.33 340.06 -8.24 -41.57 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -3.31 Total: 12.88 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -4.96 Total: -8.63 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.17 Total: -49.85 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.18 Total: -18.72 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.10 Total: 17.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.33 -8.24 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413237258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.014 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds