Wall clock time and date at job start Tue Mar 31 2020 10:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38230 * 120.41616 * 2 1 4 4 C 1.39372 * 118.35285 * 180.02562 * 3 2 1 5 5 O 1.35518 * 120.51265 * 180.02562 * 4 3 2 6 6 N 1.32822 * 118.97650 * 359.73793 * 4 3 2 7 7 C 1.31771 * 120.71903 * 0.53631 * 6 4 3 8 8 C 1.50700 * 119.09443 * 179.72441 * 7 6 4 9 9 N 1.46497 * 109.46932 * 269.73169 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38215 * 120.09251 * 180.27997 * 13 12 10 15 15 C 1.38828 * 120.67982 * 359.72196 * 14 13 12 16 16 C 1.37601 * 120.56733 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.87923 * 0.02562 * 16 15 14 18 18 C 1.40893 * 120.32484 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99693 * 145.84936 * 18 17 16 20 20 C 1.40270 * 120.00340 * 325.85599 * 18 17 16 21 21 N 1.30628 * 119.99792 * 340.93931 * 20 18 17 22 22 Si 1.86802 * 120.00322 * 160.94274 * 20 18 17 23 23 H 1.48497 * 109.46888 * 269.99951 * 22 20 18 24 24 H 1.48499 * 109.46819 * 29.99664 * 22 20 18 25 25 H 1.48498 * 109.47235 * 149.99593 * 22 20 18 26 26 N 1.31786 * 121.80727 * 359.44788 * 7 6 4 27 27 H 1.08995 * 109.47328 * 269.97466 * 1 2 3 28 28 H 1.09005 * 109.47444 * 29.97691 * 1 2 3 29 29 H 1.09005 * 109.47564 * 149.97457 * 1 2 3 30 30 H 1.08004 * 120.81836 * 0.02562 * 3 2 1 31 31 H 0.96694 * 114.00448 * 89.99660 * 5 4 3 32 32 H 1.08997 * 109.47118 * 149.73136 * 8 7 6 33 33 H 1.09003 * 109.46911 * 29.72830 * 8 7 6 34 34 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.94888 * 0.02562 * 13 12 10 36 36 H 1.07997 * 119.66332 * 179.73917 * 14 13 12 37 37 H 1.07994 * 119.72068 * 180.02562 * 15 14 13 38 38 H 1.07999 * 120.05974 * 180.02562 * 16 15 14 39 39 H 0.96993 * 120.00143 * 354.75992 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5996 1.1419 -0.0005 5 8 4.3292 2.2839 0.0000 6 7 4.2008 -0.0425 0.0043 7 6 3.4954 -1.1555 -0.0011 8 6 4.2154 -2.4794 -0.0017 9 7 4.4482 -2.9080 -1.3831 10 6 5.0816 -4.0717 -1.6300 11 8 5.4603 -4.7657 -0.7059 12 6 5.3163 -4.5028 -3.0201 13 6 4.8325 -3.7433 -4.0820 14 6 5.0499 -4.1542 -5.3836 15 6 5.7546 -5.3202 -5.6500 16 6 6.2504 -6.0886 -4.6218 17 6 6.0429 -5.6925 -3.2876 18 6 6.5460 -6.4724 -2.2276 19 1 6.8930 -5.9948 -1.3232 20 6 6.5963 -7.8691 -2.3468 21 7 5.8613 -8.4752 -3.2406 22 14 7.7142 -8.8625 -1.2275 23 1 9.0481 -9.0087 -1.8635 24 1 7.8604 -8.1624 0.0739 25 1 7.1228 -10.2060 -1.0030 26 7 2.1776 -1.1426 -0.0006 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6870 2.1388 0.0004 31 1 4.5413 2.6148 0.8834 32 1 3.6074 -3.2238 0.5122 33 1 5.1711 -2.3734 0.5118 34 1 4.1470 -2.3538 -2.1201 35 1 4.2830 -2.8339 -3.8881 36 1 4.6678 -3.5619 -6.2019 37 1 5.9158 -5.6265 -6.6730 38 1 6.7978 -6.9940 -4.8384 39 1 5.2252 -7.9690 -3.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413237258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:25 Heat of formation + Delta-G solvation = -36.817055 kcal Electronic energy + Delta-G solvation = -24633.660721 eV Core-core repulsion = 20926.227107 eV Total energy + Delta-G solvation = -3707.433614 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43860 -40.82486 -38.98222 -38.68011 -36.36904 -35.78096 -34.90222 -33.06723 -31.89858 -31.24341 -29.59180 -28.59377 -27.00582 -24.59137 -24.03778 -23.24677 -22.67310 -21.35362 -20.10274 -19.83841 -18.93139 -18.30870 -17.46353 -16.79831 -16.58515 -16.43327 -16.17298 -15.86353 -15.76254 -15.59685 -15.37171 -14.83486 -14.47789 -14.22151 -14.03164 -13.96751 -13.63966 -13.54763 -13.43958 -12.95008 -12.91011 -12.69838 -12.51309 -12.05270 -11.96146 -11.77629 -11.48993 -11.47119 -10.96353 -10.69973 -10.47929 -10.33594 -10.15748 -9.64665 -9.51851 -9.11381 -6.47593 -0.44231 -0.14945 0.36376 0.88679 1.47814 1.63362 1.79065 2.05735 2.14760 2.20279 2.31953 2.63931 2.73063 2.76352 3.17600 3.53871 3.75038 3.91306 4.10237 4.13518 4.18980 4.27397 4.40752 4.45048 4.54393 4.72387 4.76272 4.80956 4.85284 4.94486 5.11125 5.30049 5.36262 5.40299 5.63563 5.68135 5.83364 5.86652 5.94546 6.17454 6.30972 6.46121 6.57011 6.80547 6.88780 6.89268 7.48815 8.04033 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003239 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.989867 B = 8641.258352 C = 9256.614376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.178 3.822 3 C -0.221 4.221 4 C 0.352 3.648 5 O -0.480 6.480 6 N -0.557 5.557 7 C 0.329 3.671 8 C 0.198 3.802 9 N -0.721 5.721 10 C 0.564 3.436 11 O -0.571 6.571 12 C -0.283 4.283 13 C -0.043 4.043 14 C -0.244 4.244 15 C -0.070 4.070 16 C -0.223 4.223 17 C 0.099 3.901 18 C -0.509 4.509 19 H 0.082 0.918 20 C -0.002 4.002 21 N -0.815 5.815 22 Si 1.119 2.881 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.267 1.267 26 N -0.531 5.531 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.194 0.806 31 H 0.430 0.570 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 19.880 5.766 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.034 3.966 3 C -0.243 4.243 4 C 0.165 3.835 5 O -0.291 6.291 6 N -0.284 5.284 7 C 0.061 3.939 8 C 0.073 3.927 9 N -0.376 5.376 10 C 0.358 3.642 11 O -0.452 6.452 12 C -0.288 4.288 13 C -0.062 4.062 14 C -0.263 4.263 15 C -0.088 4.088 16 C -0.243 4.243 17 C 0.094 3.906 18 C -0.537 4.537 19 H 0.100 0.900 20 C -0.217 4.217 21 N -0.439 5.439 22 Si 0.936 3.064 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.191 1.191 26 N -0.249 5.249 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.211 0.789 31 H 0.293 0.707 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.236 0.764 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.957 17.048 6.155 20.217 hybrid contribution -0.751 2.538 -0.248 2.658 sum -9.708 19.586 5.907 22.644 Atomic orbital electron populations 1.20961 0.84387 1.05466 1.05269 1.22435 0.99623 0.86760 0.87758 1.23162 0.93569 1.02629 1.04974 1.19740 0.88294 0.85092 0.90348 1.84702 1.73797 1.34185 1.36386 1.67732 1.44206 0.99503 1.16918 1.22421 0.86649 0.92585 0.92290 1.19699 0.99186 0.88925 0.84880 1.45591 1.61795 1.22737 1.07480 1.18376 0.76522 0.79837 0.89472 1.90667 1.52792 1.54535 1.47196 1.19709 1.13232 1.04277 0.91620 1.21073 0.95571 0.96890 0.92619 1.20776 1.09379 1.00074 0.96060 1.21156 0.95272 0.94196 0.98194 1.21233 1.07700 1.02480 0.92839 1.17869 0.87831 0.91590 0.93265 1.21171 1.35144 0.94440 1.02919 0.89973 1.28493 0.97845 0.97311 0.98061 1.70465 1.15432 1.41431 1.16582 0.82979 0.74803 0.74486 0.74142 1.17952 1.19909 1.19112 1.68171 1.08868 1.32288 1.15534 0.87703 0.86948 0.90355 0.78870 0.70705 0.89674 0.90038 0.76380 0.85865 0.84702 0.85492 0.88901 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.22 71.23 0.73 -0.26 16 2 C 0.18 3.19 6.82 42.46 0.29 3.47 16 3 C -0.22 -3.22 9.81 22.54 0.22 -3.00 16 4 C 0.35 7.19 7.83 84.82 0.66 7.85 16 5 O -0.48 -7.52 13.58 -88.21 -1.20 -8.71 16 6 N -0.56 -15.54 10.36 -300.69 -3.12 -18.65 16 7 C 0.33 9.65 7.01 138.76 0.97 10.62 16 8 C 0.20 6.85 6.10 85.63 0.52 7.37 16 9 N -0.72 -27.95 5.50 -470.10 -2.58 -30.54 16 10 C 0.56 27.80 7.73 86.66 0.67 28.47 16 11 O -0.57 -32.23 13.55 -4.09 -0.06 -32.29 16 12 C -0.28 -14.36 5.92 -19.70 -0.12 -14.48 16 13 C -0.04 -1.80 9.53 22.50 0.21 -1.58 16 14 C -0.24 -9.68 10.03 22.41 0.22 -9.46 16 15 C -0.07 -3.00 10.01 22.26 0.22 -2.78 16 16 C -0.22 -11.49 7.86 22.72 0.18 -11.31 16 17 C 0.10 5.52 5.18 -21.11 -0.11 5.41 16 18 C -0.51 -29.95 7.66 23.41 0.18 -29.77 16 19 H 0.08 5.12 5.91 -2.91 -0.02 5.10 16 20 C 0.00 -0.09 5.04 85.37 0.43 0.35 16 21 N -0.82 -45.97 12.57 21.88 0.27 -45.69 16 22 Si 1.12 47.73 29.98 68.60 2.06 49.79 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 N -0.53 -13.88 10.27 -176.22 -1.81 -15.69 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.11 0.41 8.09 -2.38 -0.02 0.39 16 29 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.43 2.00 9.06 -74.06 -0.67 1.33 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.40 13.89 6.50 -92.71 -0.60 13.28 16 35 H 0.12 4.25 6.41 -2.91 -0.02 4.23 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.09 4.96 6.93 -2.91 -0.02 4.94 16 39 H 0.28 16.47 6.54 -92.71 -0.61 15.87 16 Total: -1.00 -77.44 340.06 -1.12 -78.57 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.02 Total: 32.32 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.29 Total: -9.10 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -7.23 Total: -110.57 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.25 Total: -41.01 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.06 Total: 49.79 kcal Total: -77.44 -1.12 -78.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413237258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.748 kcal (2) G-P(sol) polarization free energy of solvation -77.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds