Wall clock time and date at job start Tue Mar 31 2020 10:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38228 * 120.41515 * 2 1 4 4 C 1.39375 * 118.35509 * 180.02562 * 3 2 1 5 5 O 1.35515 * 120.51468 * 179.97438 * 4 3 2 6 6 N 1.32822 * 118.97700 * 359.97438 * 4 3 2 7 7 C 1.31771 * 120.71495 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.09180 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47153 * 270.02034 * 8 7 6 10 10 C 1.34778 * 119.99711 * 179.97438 * 9 8 7 11 11 O 1.21546 * 120.00363 * 359.97438 * 10 9 8 12 12 C 1.47892 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.39925 * 120.02192 * 359.71863 * 12 10 9 14 14 C 1.38330 * 120.35907 * 179.78459 * 13 12 10 15 15 C 1.37755 * 120.40619 * 0.47962 * 14 13 12 16 16 C 1.40748 * 120.04375 * 359.78005 * 15 14 13 17 17 C 1.41436 * 120.17652 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99715 * 150.17780 * 17 16 15 19 19 C 1.39939 * 120.00301 * 330.17664 * 17 16 15 20 20 N 1.30820 * 120.00104 * 161.73335 * 19 17 16 21 21 Si 1.86800 * 119.99702 * 341.73288 * 19 17 16 22 22 H 1.48498 * 109.47267 * 95.41134 * 21 19 17 23 23 H 1.48505 * 109.47045 * 215.41344 * 21 19 17 24 24 H 1.48506 * 109.47213 * 335.41189 * 21 19 17 25 25 C 1.38990 * 120.02810 * 180.02562 * 12 10 9 26 26 N 1.31787 * 121.81579 * 0.02562 * 7 6 4 27 27 H 1.09002 * 109.46939 * 269.97921 * 1 2 3 28 28 H 1.09000 * 109.47112 * 29.97507 * 1 2 3 29 29 H 1.09001 * 109.46962 * 149.97525 * 1 2 3 30 30 H 1.08006 * 120.82362 * 0.04660 * 3 2 1 31 31 H 0.96701 * 114.00034 * 269.98276 * 5 4 3 32 32 H 1.09005 * 109.47359 * 30.01870 * 8 7 6 33 33 H 1.09000 * 109.47196 * 150.01829 * 8 7 6 34 34 H 0.96997 * 120.00323 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.82212 * 0.02562 * 13 12 10 36 36 H 1.07995 * 119.79433 * 180.23481 * 14 13 12 37 37 H 1.08002 * 119.97794 * 179.76243 * 15 14 13 38 38 H 0.96999 * 119.99979 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.20174 * 359.95162 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5997 1.1420 -0.0005 5 8 4.3293 2.2839 -0.0011 6 7 4.2010 -0.0424 -0.0005 7 6 3.4955 -1.1553 0.0005 8 6 4.2155 -2.4792 -0.0001 9 7 4.4476 -2.9082 -1.3815 10 6 5.0810 -4.0721 -1.6282 11 8 5.4600 -4.7655 -0.7047 12 6 5.3158 -4.5049 -3.0228 13 6 4.8755 -3.7094 -4.0863 14 6 5.0954 -4.1054 -5.3934 15 6 5.7414 -5.2918 -5.6631 16 6 6.1868 -6.1078 -4.6063 17 6 6.8509 -7.3262 -4.8801 18 1 7.5883 -7.7064 -4.1887 19 6 6.5525 -8.0390 -6.0468 20 7 7.3828 -8.9485 -6.4881 21 14 4.9685 -7.6918 -6.9740 22 1 5.2371 -6.7241 -8.0679 23 1 4.4443 -8.9565 -7.5495 24 1 3.9646 -7.1187 -6.0417 25 6 5.9684 -5.7053 -3.2779 26 7 2.1777 -1.1426 0.0011 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6871 2.1389 0.0008 31 1 4.5409 2.6150 -0.8847 32 1 5.1714 -2.3732 0.5129 33 1 3.6077 -3.2236 0.5143 34 1 4.1462 -2.3544 -2.1185 35 1 4.3646 -2.7793 -3.8857 36 1 4.7550 -3.4825 -6.2073 37 1 5.9061 -5.5961 -6.6862 38 1 7.1762 -9.4423 -7.2970 39 1 6.3063 -6.3245 -2.4601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434146614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:29 Heat of formation + Delta-G solvation = -8.842209 kcal Electronic energy + Delta-G solvation = -24127.835802 eV Core-core repulsion = 20421.615269 eV Total energy + Delta-G solvation = -3706.220533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66903 -39.43708 -38.16022 -37.33536 -35.31556 -34.07404 -33.67055 -32.20796 -30.73114 -30.06175 -28.99674 -27.59209 -25.19135 -23.72924 -23.11878 -22.15965 -20.69495 -20.09441 -19.22695 -18.27453 -17.99433 -16.54599 -16.36580 -16.05597 -15.81773 -15.53775 -14.83937 -14.74867 -14.64720 -14.25837 -13.75474 -13.69602 -13.36290 -13.05951 -12.95739 -12.79114 -12.75031 -12.70368 -12.35637 -12.00890 -11.61860 -11.06815 -11.04644 -10.79310 -10.72210 -10.55903 -10.04954 -9.95351 -9.73279 -9.69904 -9.44052 -9.16233 -8.93733 -7.88357 -7.77122 -7.01188 -4.55935 0.31472 0.54739 1.89538 2.50624 2.75801 3.04851 3.11977 3.17124 3.25525 3.36875 3.59745 3.70566 3.86966 3.92693 4.44718 4.47624 4.51980 4.73594 4.88876 5.06751 5.14382 5.28645 5.32901 5.44442 5.54586 5.65376 5.84230 5.86108 6.00549 6.37277 6.50840 6.54292 6.65058 6.67862 6.89921 6.96337 7.19348 7.38798 7.48291 7.67019 7.70975 7.75697 7.97390 8.27640 8.52100 8.63324 8.71000 10.00931 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002681 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.506068 B =10442.978241 C =10678.441872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.189 3.811 3 C -0.242 4.242 4 C 0.363 3.637 5 O -0.476 6.476 6 N -0.527 5.527 7 C 0.338 3.662 8 C 0.192 3.808 9 N -0.726 5.726 10 C 0.569 3.431 11 O -0.543 6.543 12 C -0.106 4.106 13 C -0.216 4.216 14 C -0.083 4.083 15 C -0.222 4.222 16 C 0.082 3.918 17 C -0.442 4.442 18 H 0.094 0.906 19 C 0.083 3.917 20 N -0.803 5.803 21 Si 0.911 3.089 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.243 1.243 25 C -0.133 4.133 26 N -0.509 5.509 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.410 0.590 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.286 0.714 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.048 19.871 7.436 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.044 3.956 3 C -0.265 4.265 4 C 0.176 3.824 5 O -0.283 6.283 6 N -0.252 5.252 7 C 0.070 3.930 8 C 0.066 3.934 9 N -0.381 5.381 10 C 0.360 3.640 11 O -0.421 6.421 12 C -0.109 4.109 13 C -0.236 4.236 14 C -0.101 4.101 15 C -0.241 4.241 16 C 0.079 3.921 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.427 5.427 21 Si 0.737 3.263 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.154 4.154 26 N -0.226 5.226 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.270 0.730 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.205 18.317 8.571 23.621 hybrid contribution -1.006 1.487 -1.366 2.255 sum -13.210 19.804 7.206 24.872 Atomic orbital electron populations 1.20831 0.87127 1.04512 1.04040 1.21746 0.97953 0.87255 0.88638 1.22833 0.94632 1.01456 1.07588 1.19451 0.87170 0.85484 0.90313 1.84716 1.73858 1.35259 1.34510 1.67838 1.43145 0.98553 1.15697 1.22967 0.86227 0.93357 0.90471 1.19883 0.99783 0.87844 0.85857 1.45743 1.61691 1.23779 1.06846 1.18749 0.75993 0.79355 0.89949 1.90714 1.51079 1.54010 1.46260 1.19359 1.04092 0.97389 0.90095 1.20355 1.10163 1.00600 0.92485 1.20495 0.98151 0.96179 0.95267 1.21178 1.08371 0.96400 0.98163 1.17696 0.90383 0.93278 0.90759 1.19527 1.19233 1.03497 1.04708 0.88774 1.26169 0.98062 0.93588 0.95792 1.69688 1.34109 1.18926 1.19944 0.86316 0.82716 0.77285 0.80008 1.19572 1.21640 1.16645 1.21279 1.01810 0.95655 0.96611 1.68193 1.09309 1.30324 1.14731 0.89301 0.89878 0.89347 0.82837 0.73019 0.88670 0.88514 0.76411 0.88891 0.88332 0.87865 0.90300 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.22 36.01 0.37 -0.20 16 2 C 0.19 1.67 6.82 -82.31 -0.56 1.11 16 3 C -0.24 -1.88 9.81 -39.16 -0.38 -2.26 16 4 C 0.36 3.61 7.83 -16.70 -0.13 3.48 16 5 O -0.48 -3.78 13.58 -18.24 -0.25 -4.03 16 6 N -0.53 -6.62 10.36 -10.78 -0.11 -6.73 16 7 C 0.34 4.29 7.01 -157.22 -1.10 3.19 16 8 C 0.19 2.66 6.10 -5.19 -0.03 2.63 16 9 N -0.73 -11.38 5.50 -62.41 -0.34 -11.72 16 10 C 0.57 11.28 7.77 -12.31 -0.10 11.18 16 11 O -0.54 -12.18 16.33 5.33 0.09 -12.10 16 12 C -0.11 -2.28 5.87 -105.03 -0.62 -2.90 16 13 C -0.22 -4.22 9.55 -38.92 -0.37 -4.59 16 14 C -0.08 -1.69 10.01 -39.72 -0.40 -2.09 16 15 C -0.22 -5.16 7.17 -38.81 -0.28 -5.44 16 16 C 0.08 2.06 5.10 -106.87 -0.55 1.51 16 17 C -0.44 -11.85 9.57 -37.73 -0.36 -12.21 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 20 N -0.80 -21.12 13.93 55.55 0.77 -20.35 16 21 Si 0.91 20.29 24.52 -169.99 -4.17 16.12 16 22 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 23 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.24 -5.56 6.87 56.52 0.39 -5.17 16 25 C -0.13 -3.21 9.34 -38.44 -0.36 -3.57 16 26 N -0.51 -5.97 10.27 -7.05 -0.07 -6.04 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.41 1.17 9.06 45.56 0.41 1.59 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.40 5.69 6.48 -40.82 -0.26 5.43 16 35 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 36 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 38 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.12 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -32.14 340.13 -7.30 -39.44 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.39 Total: 8.34 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -4.96 Total: -8.08 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.25 Total: -44.83 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.16 Total: -16.12 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.14 -7.30 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434146614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.599 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds