Wall clock time and date at job start Tue Mar 31 2020 10:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38228 * 120.41515 * 2 1 4 4 C 1.39375 * 118.35509 * 180.02562 * 3 2 1 5 5 O 1.35515 * 120.51468 * 179.97438 * 4 3 2 6 6 N 1.32822 * 118.97700 * 359.97438 * 4 3 2 7 7 C 1.31771 * 120.71495 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.09180 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47153 * 270.02034 * 8 7 6 10 10 C 1.34778 * 119.99711 * 179.97438 * 9 8 7 11 11 O 1.21546 * 120.00363 * 359.97438 * 10 9 8 12 12 C 1.47892 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.39925 * 120.02192 * 359.71863 * 12 10 9 14 14 C 1.38330 * 120.35907 * 179.78459 * 13 12 10 15 15 C 1.37755 * 120.40619 * 0.47962 * 14 13 12 16 16 C 1.40748 * 120.04375 * 359.78005 * 15 14 13 17 17 C 1.41436 * 120.17652 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99715 * 150.17780 * 17 16 15 19 19 C 1.39939 * 120.00301 * 330.17664 * 17 16 15 20 20 N 1.30820 * 120.00104 * 161.73335 * 19 17 16 21 21 Si 1.86800 * 119.99702 * 341.73288 * 19 17 16 22 22 H 1.48498 * 109.47267 * 95.41134 * 21 19 17 23 23 H 1.48505 * 109.47045 * 215.41344 * 21 19 17 24 24 H 1.48506 * 109.47213 * 335.41189 * 21 19 17 25 25 C 1.38990 * 120.02810 * 180.02562 * 12 10 9 26 26 N 1.31787 * 121.81579 * 0.02562 * 7 6 4 27 27 H 1.09002 * 109.46939 * 269.97921 * 1 2 3 28 28 H 1.09000 * 109.47112 * 29.97507 * 1 2 3 29 29 H 1.09001 * 109.46962 * 149.97525 * 1 2 3 30 30 H 1.08006 * 120.82362 * 0.04660 * 3 2 1 31 31 H 0.96701 * 114.00034 * 269.98276 * 5 4 3 32 32 H 1.09005 * 109.47359 * 30.01870 * 8 7 6 33 33 H 1.09000 * 109.47196 * 150.01829 * 8 7 6 34 34 H 0.96997 * 120.00323 * 0.02562 * 9 8 7 35 35 H 1.07997 * 119.82212 * 0.02562 * 13 12 10 36 36 H 1.07995 * 119.79433 * 180.23481 * 14 13 12 37 37 H 1.08002 * 119.97794 * 179.76243 * 15 14 13 38 38 H 0.96999 * 119.99979 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.20174 * 359.95162 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 6 3.5997 1.1420 -0.0005 5 8 4.3293 2.2839 -0.0011 6 7 4.2010 -0.0424 -0.0005 7 6 3.4955 -1.1553 0.0005 8 6 4.2155 -2.4792 -0.0001 9 7 4.4476 -2.9082 -1.3815 10 6 5.0810 -4.0721 -1.6282 11 8 5.4600 -4.7655 -0.7047 12 6 5.3158 -4.5049 -3.0228 13 6 4.8755 -3.7094 -4.0863 14 6 5.0954 -4.1054 -5.3934 15 6 5.7414 -5.2918 -5.6631 16 6 6.1868 -6.1078 -4.6063 17 6 6.8509 -7.3262 -4.8801 18 1 7.5883 -7.7064 -4.1887 19 6 6.5525 -8.0390 -6.0468 20 7 7.3828 -8.9485 -6.4881 21 14 4.9685 -7.6918 -6.9740 22 1 5.2371 -6.7241 -8.0679 23 1 4.4443 -8.9565 -7.5495 24 1 3.9646 -7.1187 -6.0417 25 6 5.9684 -5.7053 -3.2779 26 7 2.1777 -1.1426 0.0011 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6871 2.1389 0.0008 31 1 4.5409 2.6150 -0.8847 32 1 5.1714 -2.3732 0.5129 33 1 3.6077 -3.2236 0.5143 34 1 4.1462 -2.3544 -2.1185 35 1 4.3646 -2.7793 -3.8857 36 1 4.7550 -3.4825 -6.2073 37 1 5.9061 -5.5961 -6.6862 38 1 7.1762 -9.4423 -7.2970 39 1 6.3063 -6.3245 -2.4601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434146614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:28 Heat of formation + Delta-G solvation = -35.367977 kcal Electronic energy + Delta-G solvation = -24128.986046 eV Core-core repulsion = 20421.615269 eV Total energy + Delta-G solvation = -3707.370777 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42621 -41.01303 -39.13300 -38.74878 -36.41946 -35.59232 -34.98966 -33.16767 -32.38232 -31.78956 -29.62387 -28.68785 -27.02815 -24.88703 -24.13894 -23.19134 -22.45053 -21.70895 -20.02452 -19.67189 -18.87762 -18.18782 -17.49771 -17.32821 -16.96045 -16.49596 -16.46363 -16.24465 -15.67424 -15.50523 -15.09911 -14.88043 -14.58543 -14.45963 -14.24226 -14.00732 -13.80530 -13.63142 -13.42029 -13.34588 -12.91748 -12.84656 -12.68561 -12.32276 -11.77979 -11.77270 -11.57696 -11.45432 -11.25424 -10.95817 -10.54005 -10.43376 -10.33895 -9.64511 -9.58405 -8.91685 -6.55648 -0.42674 -0.13553 0.14892 0.73083 1.25877 1.42096 1.49136 1.86462 1.91113 2.12813 2.28488 2.52758 2.64032 2.74683 3.19497 3.44266 3.72799 3.85430 3.93186 4.14608 4.21095 4.25974 4.37731 4.44748 4.51207 4.59989 4.75043 4.83389 4.86916 4.90087 4.96252 5.12395 5.19039 5.32755 5.40954 5.62348 5.69629 5.83709 5.84789 6.07722 6.28663 6.42463 6.47793 6.64797 6.73678 6.90323 7.10833 8.17286 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002681 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.506068 B =10442.978241 C =10678.441872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.180 3.820 3 C -0.221 4.221 4 C 0.352 3.648 5 O -0.481 6.481 6 N -0.555 5.555 7 C 0.326 3.674 8 C 0.194 3.806 9 N -0.703 5.703 10 C 0.569 3.431 11 O -0.577 6.577 12 C -0.111 4.111 13 C -0.184 4.184 14 C -0.081 4.081 15 C -0.224 4.224 16 C 0.066 3.934 17 C -0.487 4.487 18 H 0.051 0.949 19 C 0.045 3.955 20 N -0.848 5.848 21 Si 0.967 3.033 22 H -0.246 1.246 23 H -0.277 1.277 24 H -0.251 1.251 25 C -0.163 4.163 26 N -0.528 5.528 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.191 0.809 31 H 0.430 0.570 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.411 0.589 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.295 0.705 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.617 24.406 6.403 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.036 3.964 3 C -0.244 4.244 4 C 0.166 3.834 5 O -0.292 6.292 6 N -0.282 5.282 7 C 0.057 3.943 8 C 0.069 3.931 9 N -0.357 5.357 10 C 0.359 3.641 11 O -0.458 6.458 12 C -0.114 4.114 13 C -0.204 4.204 14 C -0.099 4.099 15 C -0.244 4.244 16 C 0.064 3.936 17 C -0.516 4.516 18 H 0.069 0.931 19 C -0.169 4.169 20 N -0.474 5.474 21 Si 0.789 3.211 22 H -0.171 1.171 23 H -0.204 1.204 24 H -0.175 1.175 25 C -0.183 4.183 26 N -0.246 5.246 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.209 0.791 31 H 0.294 0.706 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.248 0.752 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.784 22.921 7.522 28.829 hybrid contribution 0.026 0.408 -0.868 0.959 sum -15.758 23.330 6.654 28.929 Atomic orbital electron populations 1.20962 0.84522 1.05612 1.05085 1.22386 0.99530 0.86771 0.87729 1.23168 0.93649 1.02653 1.04900 1.19722 0.88240 0.85136 0.90310 1.84691 1.73796 1.34304 1.36446 1.67735 1.44155 0.99462 1.16810 1.22441 0.86664 0.92632 0.92567 1.19838 0.99786 0.89142 0.84323 1.45499 1.59734 1.22136 1.08310 1.18538 0.76380 0.80284 0.88935 1.90703 1.52729 1.55407 1.46955 1.19609 1.03183 0.96680 0.91958 1.20920 1.06951 1.00984 0.91500 1.21011 0.96575 0.95252 0.97013 1.21392 1.08071 0.97209 0.97700 1.17771 0.90906 0.93086 0.91835 1.19466 1.20850 1.05768 1.05565 0.93080 1.26908 1.00719 0.93123 0.96181 1.69720 1.35871 1.20578 1.21235 0.85471 0.78409 0.78140 0.79068 1.17074 1.20379 1.17475 1.21206 1.03936 0.97307 0.95873 1.68169 1.08841 1.32108 1.15436 0.88118 0.86956 0.90062 0.79136 0.70643 0.89373 0.88739 0.75194 0.84166 0.83509 0.87444 0.89397 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.22 71.24 0.73 0.04 16 2 C 0.18 2.56 6.82 42.46 0.29 2.85 16 3 C -0.22 -2.54 9.81 22.54 0.22 -2.32 16 4 C 0.35 5.99 7.83 84.82 0.66 6.65 16 5 O -0.48 -6.22 13.58 -88.18 -1.20 -7.42 16 6 N -0.55 -12.94 10.36 -300.69 -3.12 -16.06 16 7 C 0.33 7.77 7.01 138.76 0.97 8.74 16 8 C 0.19 5.28 6.10 85.63 0.52 5.80 16 9 N -0.70 -20.88 5.50 -469.66 -2.58 -23.46 16 10 C 0.57 22.35 7.77 86.80 0.67 23.02 16 11 O -0.58 -26.70 16.33 -3.86 -0.06 -26.76 16 12 C -0.11 -4.68 5.87 -20.13 -0.12 -4.80 16 13 C -0.18 -6.43 9.55 22.70 0.22 -6.21 16 14 C -0.08 -2.93 10.01 22.18 0.22 -2.71 16 15 C -0.22 -10.07 7.17 22.77 0.16 -9.91 16 16 C 0.07 3.45 5.10 -21.32 -0.11 3.34 16 17 C -0.49 -28.09 9.57 23.47 0.22 -27.87 16 18 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 19 C 0.05 2.44 5.40 85.26 0.46 2.90 16 20 N -0.85 -46.91 13.93 21.82 0.30 -46.60 16 21 Si 0.97 41.63 24.52 68.60 1.68 43.31 16 22 H -0.25 -9.59 6.71 99.48 0.67 -8.92 16 23 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.25 -11.00 6.87 99.48 0.68 -10.32 16 25 C -0.16 -8.17 9.34 23.01 0.21 -7.95 16 26 N -0.53 -11.24 10.27 -176.22 -1.81 -13.05 16 27 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.11 0.09 8.09 -2.39 -0.02 0.07 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.43 1.11 9.06 -74.06 -0.67 0.43 16 32 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 34 H 0.41 10.31 6.48 -92.71 -0.60 9.71 16 35 H 0.14 3.62 6.38 -2.91 -0.02 3.61 16 36 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.11 4.72 4.72 -2.91 -0.01 4.70 16 38 H 0.30 14.54 8.30 -92.71 -0.77 13.77 16 39 H 0.09 4.96 7.64 -2.91 -0.02 4.94 16 Total: -1.00 -75.32 340.13 -1.64 -76.96 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.21 Total: 21.51 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.35 Total: -8.43 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -7.20 Total: -99.17 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.26 Total: -34.18 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.68 Total: 43.31 kcal Total: -75.32 -1.64 -76.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434146614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.593 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds