Wall clock time and date at job start Tue Mar 31 2020 10:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32160 * 120.53332 * 2 1 4 4 C 1.31855 * 120.96465 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09439 * 0.02562 * 4 3 2 6 6 C 1.32133 * 120.96840 * 359.97438 * 5 4 3 7 7 C 1.39927 * 120.53634 * 180.28584 * 2 1 3 8 8 C 1.47829 * 120.94074 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00439 * 6.40733 * 8 7 2 10 10 N 1.34778 * 119.99897 * 186.40800 * 8 7 2 11 11 C 1.46501 * 120.00213 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47071 * 179.97438 * 11 10 8 13 13 C 1.38302 * 119.93313 * 269.72290 * 12 11 10 14 14 C 1.38101 * 120.06998 * 179.72567 * 13 12 11 15 15 C 1.38870 * 119.92785 * 0.57301 * 14 13 12 16 16 O 1.35753 * 120.06839 * 179.67826 * 15 14 13 17 17 C 1.34838 * 117.00120 * 185.69356 * 16 15 14 18 18 H 1.08000 * 119.99673 * 354.87358 * 17 16 15 19 19 C 1.38651 * 119.99777 * 174.88048 * 17 16 15 20 20 N 1.31557 * 119.99617 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00183 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46970 * 90.00669 * 21 19 17 23 23 H 1.48500 * 109.46936 * 210.00052 * 21 19 17 24 24 H 1.48499 * 109.47283 * 330.00359 * 21 19 17 25 25 C 1.38883 * 119.86610 * 359.70312 * 15 14 13 26 26 C 1.38098 * 119.92794 * 0.02562 * 25 15 14 27 27 H 1.08993 * 109.47201 * 96.71479 * 1 2 3 28 28 H 1.08998 * 109.47075 * 216.71644 * 1 2 3 29 29 H 1.09003 * 109.47156 * 336.71103 * 1 2 3 30 30 H 1.07998 * 118.95179 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.53619 * 179.97438 * 6 5 4 32 32 H 0.97010 * 120.00107 * 359.97438 * 10 8 7 33 33 H 1.08992 * 109.47120 * 299.99904 * 11 10 8 34 34 H 1.09004 * 109.47187 * 60.00105 * 11 10 8 35 35 H 1.08005 * 119.96201 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.03167 * 180.27685 * 14 13 12 37 37 H 0.97007 * 119.99651 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.03820 * 179.97438 * 25 15 14 39 39 H 1.08006 * 119.96481 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0363 -0.0015 6 6 3.6164 -1.1462 -0.0016 7 6 2.2180 -1.2052 -0.0060 8 6 1.5121 -2.5040 -0.0119 9 8 0.3027 -2.5380 -0.1291 10 7 2.2095 -3.6506 0.1126 11 6 1.5101 -4.9379 0.1062 12 6 2.5109 -6.0541 0.2586 13 6 3.0820 -6.6269 -0.8633 14 6 4.0038 -7.6461 -0.7267 15 6 4.3481 -8.1040 0.5383 16 8 5.2490 -9.1102 0.6756 17 6 5.4501 -9.5862 1.9210 18 1 4.9684 -9.1133 2.7641 19 6 6.2753 -10.6826 2.1192 20 7 6.4711 -11.1473 3.3343 21 14 7.1079 -11.5008 0.6609 22 1 8.4279 -10.8635 0.4230 23 1 7.3001 -12.9452 0.9470 24 1 6.2577 -11.3442 -0.5465 25 6 3.7686 -7.5307 1.6627 26 6 2.8517 -6.5080 1.5198 27 1 -0.3633 -0.1202 -1.0205 28 1 -0.3633 -0.8238 0.6144 29 1 -0.3633 0.9440 0.4063 30 1 4.0126 2.0972 -0.0001 31 1 4.2039 -2.0524 -0.0029 32 1 3.1747 -3.6236 0.2058 33 1 0.8007 -4.9700 0.9331 34 1 0.9752 -5.0561 -0.8362 35 1 2.8098 -6.2738 -1.8470 36 1 4.4527 -8.0899 -1.6030 37 1 7.0481 -11.9146 3.4730 38 1 4.0341 -7.8849 2.6479 39 1 2.4004 -6.0620 2.3938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647078299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:01 Heat of formation + Delta-G solvation = 12.766353 kcal Electronic energy + Delta-G solvation = -24003.493142 eV Core-core repulsion = 20298.209626 eV Total energy + Delta-G solvation = -3705.283516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63294 -39.72785 -39.17390 -37.14175 -35.19531 -34.33398 -33.07180 -32.51289 -30.51822 -30.32430 -28.81140 -26.41153 -25.47184 -24.44655 -23.19204 -22.25943 -21.14156 -20.72082 -18.28965 -18.12250 -17.99928 -17.38552 -17.11226 -15.96607 -15.78619 -15.18683 -14.95348 -14.65869 -14.39281 -14.16284 -14.03689 -13.92405 -13.47985 -13.45520 -13.26164 -12.94859 -12.79334 -12.56204 -12.31963 -12.09692 -11.95853 -11.54993 -11.04487 -10.95912 -10.91815 -10.82599 -10.26560 -10.03106 -9.97374 -9.68950 -9.54360 -9.18583 -9.00174 -8.45480 -7.55661 -6.54625 -4.21892 0.07172 0.62539 1.84615 1.95647 2.57302 3.02239 3.15314 3.17436 3.31113 3.41557 3.63391 3.67508 3.96678 4.12554 4.28339 4.38961 4.56448 4.67620 4.86457 4.97938 5.05189 5.13425 5.24764 5.38273 5.47538 5.48481 5.63466 5.71357 5.74077 5.96362 6.01656 6.17002 6.25531 6.38635 6.50198 6.60450 6.82092 7.04448 7.11391 7.28462 7.43261 7.61028 7.65082 7.88915 7.92497 8.79616 9.39450 10.52356 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.002414 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.738988 B =11595.742014 C =12062.385630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.234 3.766 3 N -0.527 5.527 4 C 0.317 3.683 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.245 4.245 8 C 0.565 3.435 9 O -0.530 6.530 10 N -0.714 5.714 11 C 0.179 3.821 12 C -0.211 4.211 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.168 3.832 16 O -0.211 6.211 17 C -0.392 4.392 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.874 5.874 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.051 4.051 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.202 0.798 31 H 0.173 0.827 32 H 0.401 0.599 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.281 0.719 38 H 0.135 0.865 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 18.981 -6.855 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 N -0.242 5.242 4 C 0.030 3.970 5 N -0.241 5.241 6 C 0.021 3.979 7 C -0.253 4.253 8 C 0.350 3.650 9 O -0.409 6.409 10 N -0.365 5.365 11 C 0.057 3.943 12 C -0.213 4.213 13 C -0.074 4.074 14 C -0.214 4.214 15 C 0.114 3.886 16 O -0.115 6.115 17 C -0.468 4.468 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.511 5.511 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.070 4.070 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.218 0.782 31 H 0.190 0.810 32 H 0.236 0.764 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.689 19.495 -6.944 22.077 hybrid contribution 0.726 -1.244 -0.253 1.462 sum -6.963 18.251 -7.197 20.818 Atomic orbital electron populations 1.21086 0.86501 1.04434 1.04799 1.22028 0.98230 0.86497 0.84478 1.68437 1.10296 1.29745 1.15689 1.25253 0.86778 0.97333 0.87616 1.68475 1.41492 0.98948 1.15167 1.23550 0.90889 0.96832 0.86677 1.21683 0.96281 0.96409 1.10934 1.17760 0.86924 0.83133 0.77165 1.90744 1.13312 1.87025 1.49805 1.46268 1.11217 1.05798 1.73218 1.20058 0.92895 0.79086 1.02245 1.19242 1.05570 1.02668 0.93790 1.20539 0.94885 0.94715 0.97266 1.20214 1.03817 1.02254 0.95142 1.19192 0.87850 0.88154 0.93371 1.83575 1.50977 1.44289 1.32684 1.20794 1.30538 1.13893 0.81540 0.87457 1.24498 0.96388 0.95445 0.97591 1.69643 1.36554 1.24623 1.20245 0.86168 0.80125 0.78217 0.82350 1.19766 1.20666 1.18286 1.21286 1.02539 1.00902 0.99613 1.20705 0.95404 0.94997 0.95874 0.89061 0.87524 0.90597 0.78195 0.81000 0.76398 0.91013 0.91027 0.86727 0.86318 0.90839 0.84753 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.96 36.01 0.32 -0.70 16 2 C 0.23 2.45 6.86 -81.82 -0.56 1.89 16 3 N -0.53 -5.38 10.36 -10.48 -0.11 -5.49 16 4 C 0.32 2.81 12.27 -92.02 -1.13 1.68 16 5 N -0.53 -5.20 10.42 -14.24 -0.15 -5.35 16 6 C 0.19 1.73 10.80 -16.78 -0.18 1.55 16 7 C -0.25 -2.52 5.91 -104.69 -0.62 -3.14 16 8 C 0.56 6.42 7.72 -12.34 -0.10 6.32 16 9 O -0.53 -7.20 13.56 5.32 0.07 -7.13 16 10 N -0.71 -7.47 5.50 -62.44 -0.34 -7.81 16 11 C 0.18 2.11 5.80 -5.19 -0.03 2.08 16 12 C -0.21 -2.96 5.25 -104.58 -0.55 -3.51 16 13 C -0.06 -0.81 9.69 -39.61 -0.38 -1.19 16 14 C -0.19 -3.45 9.99 -39.40 -0.39 -3.85 16 15 C 0.17 3.54 6.65 -39.11 -0.26 3.28 16 16 O -0.21 -5.24 8.59 0.02 0.00 -5.24 16 17 C -0.39 -10.50 9.95 30.88 0.31 -10.20 16 18 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 19 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 20 N -0.87 -24.32 13.96 55.48 0.77 -23.55 16 21 Si 0.91 20.75 28.62 -169.99 -4.86 15.89 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.22 -4.37 9.17 -39.39 -0.36 -4.73 16 26 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.09 6.02 -51.93 -0.31 0.78 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.20 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.17 1.17 6.58 -52.49 -0.35 0.83 16 32 H 0.40 3.60 6.64 -40.82 -0.27 3.33 16 33 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 39 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -30.14 339.84 -7.93 -38.07 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.02 Total: 5.53 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -4.41 Total: -10.04 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.17 Total: -42.20 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.86 Total: 15.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.14 -7.93 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647078299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.838 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds