Wall clock time and date at job start Tue Mar 31 2020 10:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32160 * 120.53332 * 2 1 4 4 C 1.31855 * 120.96465 * 180.02562 * 3 2 1 5 5 N 1.31884 * 122.09439 * 0.02562 * 4 3 2 6 6 C 1.32133 * 120.96840 * 359.97438 * 5 4 3 7 7 C 1.39927 * 120.53634 * 180.28584 * 2 1 3 8 8 C 1.47829 * 120.94074 * 359.97438 * 7 2 1 9 9 O 1.21547 * 120.00439 * 6.40733 * 8 7 2 10 10 N 1.34778 * 119.99897 * 186.40800 * 8 7 2 11 11 C 1.46501 * 120.00213 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47071 * 179.97438 * 11 10 8 13 13 C 1.38302 * 119.93313 * 269.72290 * 12 11 10 14 14 C 1.38101 * 120.06998 * 179.72567 * 13 12 11 15 15 C 1.38870 * 119.92785 * 0.57301 * 14 13 12 16 16 O 1.35753 * 120.06839 * 179.67826 * 15 14 13 17 17 C 1.34838 * 117.00120 * 185.69356 * 16 15 14 18 18 H 1.08000 * 119.99673 * 354.87358 * 17 16 15 19 19 C 1.38651 * 119.99777 * 174.88048 * 17 16 15 20 20 N 1.31557 * 119.99617 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00183 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46970 * 90.00669 * 21 19 17 23 23 H 1.48500 * 109.46936 * 210.00052 * 21 19 17 24 24 H 1.48499 * 109.47283 * 330.00359 * 21 19 17 25 25 C 1.38883 * 119.86610 * 359.70312 * 15 14 13 26 26 C 1.38098 * 119.92794 * 0.02562 * 25 15 14 27 27 H 1.08993 * 109.47201 * 96.71479 * 1 2 3 28 28 H 1.08998 * 109.47075 * 216.71644 * 1 2 3 29 29 H 1.09003 * 109.47156 * 336.71103 * 1 2 3 30 30 H 1.07998 * 118.95179 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.53619 * 179.97438 * 6 5 4 32 32 H 0.97010 * 120.00107 * 359.97438 * 10 8 7 33 33 H 1.08992 * 109.47120 * 299.99904 * 11 10 8 34 34 H 1.09004 * 109.47187 * 60.00105 * 11 10 8 35 35 H 1.08005 * 119.96201 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.03167 * 180.27685 * 14 13 12 37 37 H 0.97007 * 119.99651 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.03820 * 179.97438 * 25 15 14 39 39 H 1.08006 * 119.96481 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2061 0.0363 -0.0015 6 6 3.6164 -1.1462 -0.0016 7 6 2.2180 -1.2052 -0.0060 8 6 1.5121 -2.5040 -0.0119 9 8 0.3027 -2.5380 -0.1291 10 7 2.2095 -3.6506 0.1126 11 6 1.5101 -4.9379 0.1062 12 6 2.5109 -6.0541 0.2586 13 6 3.0820 -6.6269 -0.8633 14 6 4.0038 -7.6461 -0.7267 15 6 4.3481 -8.1040 0.5383 16 8 5.2490 -9.1102 0.6756 17 6 5.4501 -9.5862 1.9210 18 1 4.9684 -9.1133 2.7641 19 6 6.2753 -10.6826 2.1192 20 7 6.4711 -11.1473 3.3343 21 14 7.1079 -11.5008 0.6609 22 1 8.4279 -10.8635 0.4230 23 1 7.3001 -12.9452 0.9470 24 1 6.2577 -11.3442 -0.5465 25 6 3.7686 -7.5307 1.6627 26 6 2.8517 -6.5080 1.5198 27 1 -0.3633 -0.1202 -1.0205 28 1 -0.3633 -0.8238 0.6144 29 1 -0.3633 0.9440 0.4063 30 1 4.0126 2.0972 -0.0001 31 1 4.2039 -2.0524 -0.0029 32 1 3.1747 -3.6236 0.2058 33 1 0.8007 -4.9700 0.9331 34 1 0.9752 -5.0561 -0.8362 35 1 2.8098 -6.2738 -1.8470 36 1 4.4527 -8.0899 -1.6030 37 1 7.0481 -11.9146 3.4730 38 1 4.0341 -7.8849 2.6479 39 1 2.4004 -6.0620 2.3938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647078299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:00 Heat of formation + Delta-G solvation = -6.158199 kcal Electronic energy + Delta-G solvation = -24004.313772 eV Core-core repulsion = 20298.209626 eV Total energy + Delta-G solvation = -3706.104146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37912 -41.01844 -40.33684 -38.60600 -36.11742 -35.21477 -34.45884 -33.82484 -31.88483 -31.58145 -29.64795 -27.81311 -26.67090 -25.60173 -23.94491 -23.71046 -22.17897 -21.95126 -19.86096 -19.24880 -19.00522 -18.77294 -17.82626 -16.90429 -16.72355 -16.60061 -16.23910 -15.83961 -15.69100 -15.49053 -15.39517 -15.01997 -14.64597 -14.43404 -14.26370 -14.16314 -14.05472 -13.93453 -13.41396 -13.27557 -13.07400 -12.72088 -12.57611 -12.47395 -12.31874 -11.93923 -11.69280 -11.30040 -10.97644 -10.83874 -10.78698 -10.41746 -10.09374 -9.82901 -9.09955 -8.51124 -6.24196 -0.66078 -0.10418 0.47903 0.55364 1.32726 1.36015 1.51900 1.73353 2.08291 2.27187 2.67710 2.77766 2.95723 3.01399 3.04734 3.17665 3.26685 3.60648 3.75300 3.89263 4.02156 4.14651 4.27271 4.42467 4.44845 4.54781 4.68708 4.74355 4.79376 4.82675 4.96485 5.02754 5.22767 5.27166 5.33883 5.39048 5.54112 5.70815 5.78562 5.79139 5.88540 6.19350 6.41824 6.83174 6.90480 7.06119 7.56323 8.60123 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.002414 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.738988 B =11595.742014 C =12062.385630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.224 3.776 3 N -0.540 5.540 4 C 0.318 3.682 5 N -0.542 5.542 6 C 0.192 3.808 7 C -0.256 4.256 8 C 0.570 3.430 9 O -0.553 6.553 10 N -0.707 5.707 11 C 0.184 3.816 12 C -0.176 4.176 13 C -0.043 4.043 14 C -0.193 4.193 15 C 0.129 3.871 16 O -0.242 6.242 17 C -0.399 4.399 18 H 0.083 0.917 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.261 1.261 25 C -0.239 4.239 26 C -0.049 4.049 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.194 0.806 32 H 0.410 0.590 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.285 0.715 38 H 0.108 0.892 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 21.199 -9.124 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 N -0.255 5.255 4 C 0.032 3.968 5 N -0.256 5.256 6 C 0.025 3.975 7 C -0.263 4.263 8 C 0.357 3.643 9 O -0.433 6.433 10 N -0.359 5.359 11 C 0.062 3.938 12 C -0.177 4.177 13 C -0.062 4.062 14 C -0.212 4.212 15 C 0.080 3.920 16 O -0.149 6.149 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.185 1.185 25 C -0.258 4.258 26 C -0.067 4.067 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.249 0.751 31 H 0.211 0.789 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.554 21.762 -9.228 25.138 hybrid contribution 0.724 -1.550 0.374 1.751 sum -7.830 20.213 -8.854 23.415 Atomic orbital electron populations 1.21035 0.86032 1.04517 1.04733 1.22266 0.98827 0.86856 0.84313 1.68505 1.10959 1.29627 1.16415 1.25926 0.86535 0.98355 0.86007 1.68567 1.41761 0.99392 1.15853 1.23904 0.90650 0.97562 0.85421 1.21575 0.96690 0.95740 1.12319 1.17811 0.86561 0.83443 0.76510 1.90745 1.14343 1.87330 1.50905 1.46042 1.11631 1.05103 1.73097 1.19992 0.92076 0.78545 1.03224 1.19534 1.03657 1.01700 0.92779 1.20973 0.92934 0.92949 0.99308 1.20524 1.04019 1.02601 0.94019 1.19767 0.88702 0.88268 0.95311 1.83523 1.53763 1.46608 1.31044 1.20710 1.30537 1.14136 0.82128 0.89931 1.25288 0.97268 0.96146 1.00143 1.69731 1.38565 1.25943 1.22031 0.85221 0.79044 0.77648 0.78865 1.19047 1.19513 1.18483 1.21273 1.03957 1.02357 0.98257 1.20938 0.94215 0.93741 0.97849 0.88844 0.88595 0.89581 0.75131 0.78883 0.75338 0.90656 0.89746 0.82654 0.85212 0.90562 0.87412 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.96 71.24 0.64 -1.15 16 2 C 0.22 4.27 6.86 42.92 0.29 4.56 16 3 N -0.54 -9.93 10.36 -187.06 -1.94 -11.87 16 4 C 0.32 4.85 12.27 180.84 2.22 7.07 16 5 N -0.54 -9.32 10.42 -198.98 -2.07 -11.40 16 6 C 0.19 3.02 10.80 85.07 0.92 3.93 16 7 C -0.26 -4.65 5.91 -19.91 -0.12 -4.76 16 8 C 0.57 11.33 7.72 86.78 0.67 12.00 16 9 O -0.55 -13.68 13.56 -3.86 -0.05 -13.73 16 10 N -0.71 -12.12 5.50 -469.73 -2.59 -14.70 16 11 C 0.18 3.54 5.80 85.63 0.50 4.04 16 12 C -0.18 -4.25 5.25 -19.83 -0.10 -4.35 16 13 C -0.04 -1.08 9.69 22.25 0.22 -0.87 16 14 C -0.19 -6.43 9.99 22.39 0.22 -6.20 16 15 C 0.13 5.52 6.65 22.58 0.15 5.67 16 16 O -0.24 -12.44 8.59 -22.86 -0.20 -12.63 16 17 C -0.40 -22.57 9.95 67.92 0.68 -21.90 16 18 H 0.08 4.89 5.44 -2.91 -0.02 4.88 16 19 C 0.01 0.58 5.49 84.83 0.47 1.04 16 20 N -0.92 -53.85 13.96 21.61 0.30 -53.55 16 21 Si 0.97 43.94 28.62 68.60 1.96 45.90 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 25 C -0.24 -9.50 9.17 22.39 0.21 -9.29 16 26 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.84 6.02 -2.39 -0.01 1.83 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.23 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.19 1.99 6.58 -2.91 -0.02 1.97 16 32 H 0.41 5.71 6.64 -92.70 -0.62 5.10 16 33 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 34 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 35 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 38 H 0.11 4.84 5.64 -2.91 -0.02 4.82 16 39 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -68.61 339.84 3.08 -65.53 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.50 Total: 17.89 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 7.17 Total: -11.45 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -6.30 Total: -91.52 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.25 Total: -26.36 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.96 Total: 45.90 kcal Total: -68.61 3.08 -65.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647078299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.371 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds