Wall clock time and date at job start Tue Mar 31 2020 10:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46989 * 2 1 4 4 C 1.50696 * 109.46850 * 239.99797 * 2 1 3 5 5 H 1.07998 * 119.99660 * 239.99786 * 4 2 1 6 6 C 1.37878 * 120.00320 * 60.00448 * 4 2 1 7 7 N 1.31517 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00235 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47507 * 119.99293 * 8 6 4 11 11 H 1.48496 * 109.47369 * 239.99642 * 8 6 4 12 12 N 1.46499 * 109.47267 * 119.99693 * 2 1 3 13 13 C 1.34782 * 119.99865 * 275.00216 * 12 2 1 14 14 O 1.21548 * 120.00280 * 359.97438 * 13 12 2 15 15 C 1.47863 * 119.99618 * 179.97438 * 13 12 2 16 16 C 1.39605 * 120.11548 * 359.72251 * 15 13 12 17 17 C 1.37969 * 119.96286 * 179.71707 * 16 15 13 18 18 C 1.38281 * 120.20994 * 0.56163 * 17 16 15 19 19 C 1.38829 * 120.23705 * 359.71588 * 18 17 16 20 20 O 1.35906 * 119.98616 * 179.97438 * 19 18 17 21 21 C 1.35677 * 117.99670 * 250.20676 * 20 19 18 22 22 C 1.39126 * 120.07278 * 185.82857 * 21 20 19 23 23 N 1.31961 * 119.91384 * 179.97438 * 22 21 20 24 24 C 1.32246 * 120.07032 * 359.97438 * 23 22 21 25 25 C 1.38199 * 120.14600 * 359.97249 * 24 23 22 26 26 N 1.32233 * 120.08449 * 359.79880 * 25 24 23 27 27 C 1.38507 * 120.02548 * 0.02562 * 19 18 17 28 28 H 1.09008 * 109.46994 * 300.00285 * 1 2 3 29 29 H 1.09001 * 109.47207 * 59.99672 * 1 2 3 30 30 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00217 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99849 * 94.99381 * 12 2 1 33 33 H 1.07990 * 120.02041 * 359.97438 * 16 15 13 34 34 H 1.08002 * 119.89801 * 180.25239 * 17 16 15 35 35 H 1.08004 * 119.87782 * 179.69695 * 18 17 16 36 36 H 1.08007 * 120.03910 * 359.95065 * 22 21 20 37 37 H 1.07996 * 119.92728 * 180.02562 * 24 23 22 38 38 H 1.08001 * 119.96019 * 180.02562 * 25 24 23 39 39 H 1.08004 * 120.10189 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 3.1483 -2.2859 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8584 1.1614 2.4116 15 6 2.6394 -0.7152 3.5646 16 6 2.9662 -2.0712 3.5062 17 6 3.4309 -2.7172 4.6333 18 6 3.5634 -2.0286 5.8251 19 6 3.2355 -0.6813 5.8942 20 8 3.3672 -0.0096 7.0683 21 6 2.2366 0.3721 7.7140 22 6 2.3189 1.1657 8.8538 23 7 1.2172 1.5356 9.4790 24 6 0.0362 1.1532 9.0229 25 6 -0.0486 0.3659 7.8903 26 7 1.0512 -0.0045 7.2566 27 6 2.7731 -0.0219 4.7674 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7082 1.1608 -3.4844 32 1 2.2489 -1.6316 1.1527 33 1 2.8592 -2.6133 2.5783 34 1 3.6872 -3.7653 4.5859 35 1 3.9230 -2.5408 6.7053 36 1 3.2832 1.4782 9.2266 37 1 -0.8639 1.4576 9.5362 38 1 -1.0147 0.0557 7.5203 39 1 2.5172 1.0261 4.8199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076586785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:19 Heat of formation + Delta-G solvation = 14.948553 kcal Electronic energy + Delta-G solvation = -24527.406447 eV Core-core repulsion = 20822.217559 eV Total energy + Delta-G solvation = -3705.188889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74671 -40.19968 -39.04273 -37.35359 -34.87666 -34.39756 -32.57473 -31.63568 -31.19199 -30.06794 -28.61264 -25.34151 -25.29878 -24.57603 -23.98131 -22.41831 -21.15637 -19.88221 -19.00606 -18.28352 -17.46050 -17.09190 -16.56080 -16.40472 -15.71006 -15.42869 -15.20974 -14.91421 -14.68264 -14.31926 -14.13548 -13.84553 -13.25972 -13.15018 -13.05313 -12.54151 -12.32005 -11.95458 -11.86609 -11.74309 -11.57047 -11.20163 -11.11967 -10.99258 -10.78124 -10.33649 -10.27148 -9.58354 -9.31516 -9.19403 -9.08742 -9.02044 -8.78406 -8.59121 -7.97223 -6.15450 -4.25017 0.47127 0.74691 0.84441 1.10562 2.53766 3.21780 3.26676 3.29652 3.32124 3.36920 3.73798 3.94425 3.96524 4.06254 4.18976 4.33893 4.73678 4.76543 4.80639 4.92890 5.07544 5.13470 5.16979 5.19328 5.37891 5.42836 5.75315 5.86129 6.14590 6.21927 6.28202 6.49831 6.79745 6.88322 6.93228 7.07339 7.11141 7.38697 7.43275 7.51611 7.65594 7.87438 8.10934 8.58318 8.73224 9.02583 9.42427 10.90675 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002815 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.546817 B = 9944.052166 C =10674.443813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.699 5.699 13 C 0.542 3.458 14 O -0.548 6.548 15 C -0.105 4.105 16 C -0.083 4.083 17 C -0.113 4.113 18 C -0.099 4.099 19 C 0.075 3.925 20 O -0.237 6.237 21 C 0.270 3.730 22 C 0.046 3.954 23 N -0.405 5.405 24 C 0.006 3.994 25 C 0.098 3.902 26 N -0.481 5.481 27 C -0.061 4.061 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -5.999 21.252 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.347 5.347 13 C 0.327 3.673 14 O -0.428 6.428 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.118 4.118 19 C 0.033 3.967 20 O -0.141 6.141 21 C 0.089 3.911 22 C -0.117 4.117 23 N -0.120 5.120 24 C -0.152 4.152 25 C -0.061 4.061 26 N -0.209 5.209 27 C -0.081 4.081 28 H 0.034 0.966 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.192 0.808 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.477 -4.979 21.141 21.770 hybrid contribution 0.229 -0.979 -1.059 1.460 sum 1.705 -5.958 20.082 21.017 Atomic orbital electron populations 1.22083 0.98286 0.99218 1.00999 1.18807 0.91147 0.94069 0.79758 0.93189 1.21235 1.32512 1.13280 0.90245 0.91966 1.24893 0.94777 0.94948 0.99095 1.69910 1.35808 1.22445 1.23847 0.86378 0.78610 0.79516 0.82499 1.19709 1.20842 1.20849 1.46492 1.64326 1.13557 1.10307 1.18146 0.79079 0.86803 0.83306 1.90733 1.51446 1.15614 1.85035 1.20167 1.01873 0.94181 0.94616 1.21510 0.96054 0.93539 0.99108 1.20933 1.00123 1.00222 0.91844 1.21182 0.99898 0.91510 0.99176 1.18386 1.03887 0.90971 0.83441 1.84682 1.26303 1.69236 1.33840 1.21225 0.86125 0.92410 0.91297 1.22905 0.99291 0.97038 0.92511 1.68487 0.98256 1.17151 1.28117 1.23639 0.96779 0.98327 0.96501 1.23624 0.97083 0.93441 0.91964 1.68193 0.98321 1.22616 1.31723 1.21344 0.95139 1.00740 0.90833 0.96611 0.89016 0.95376 0.92571 0.77785 0.84699 0.84611 0.85094 0.80475 0.80854 0.80792 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.73 2.56 -69.09 -0.18 6.55 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.70 -14.73 5.02 -55.87 -0.28 -15.01 16 13 C 0.54 11.33 7.74 -12.32 -0.10 11.24 16 14 O -0.55 -13.61 16.01 5.32 0.09 -13.52 16 15 C -0.10 -1.73 5.87 -104.99 -0.62 -2.35 16 16 C -0.08 -1.08 9.54 -39.17 -0.37 -1.45 16 17 C -0.11 -1.20 10.03 -39.66 -0.40 -1.60 16 18 C -0.10 -1.11 9.98 -39.35 -0.39 -1.50 16 19 C 0.08 1.02 5.26 -39.26 -0.21 0.81 16 20 O -0.24 -3.01 9.98 -2.95 -0.03 -3.04 16 21 C 0.27 3.26 7.33 -16.92 -0.12 3.14 16 22 C 0.05 0.46 11.18 -17.17 -0.19 0.27 16 23 N -0.41 -4.14 10.49 -12.92 -0.14 -4.27 16 24 C 0.01 0.05 11.21 -17.39 -0.19 -0.15 16 25 C 0.10 0.91 11.22 -17.39 -0.20 0.72 16 26 N -0.48 -6.03 9.19 -13.12 -0.12 -6.16 16 27 C -0.06 -0.97 8.95 -39.02 -0.35 -1.32 16 28 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.95 6.57 -40.82 -0.27 6.68 16 33 H 0.14 1.53 6.40 -52.49 -0.34 1.19 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.14 2.36 7.65 -52.48 -0.40 1.96 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.15 343.91 -7.27 -40.42 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.21 Total: 6.76 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.37 Total: -1.67 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.09 Total: -49.58 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.06 Total: -16.56 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.15 -7.27 -40.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076586785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.370 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds