Wall clock time and date at job start Tue Mar 31 2020 10:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46989 * 2 1 4 4 C 1.50696 * 109.46850 * 239.99797 * 2 1 3 5 5 H 1.07998 * 119.99660 * 239.99786 * 4 2 1 6 6 C 1.37878 * 120.00320 * 60.00448 * 4 2 1 7 7 N 1.31517 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00235 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47507 * 119.99293 * 8 6 4 11 11 H 1.48496 * 109.47369 * 239.99642 * 8 6 4 12 12 N 1.46499 * 109.47267 * 119.99693 * 2 1 3 13 13 C 1.34782 * 119.99865 * 275.00216 * 12 2 1 14 14 O 1.21548 * 120.00280 * 359.97438 * 13 12 2 15 15 C 1.47863 * 119.99618 * 179.97438 * 13 12 2 16 16 C 1.39605 * 120.11548 * 359.72251 * 15 13 12 17 17 C 1.37969 * 119.96286 * 179.71707 * 16 15 13 18 18 C 1.38281 * 120.20994 * 0.56163 * 17 16 15 19 19 C 1.38829 * 120.23705 * 359.71588 * 18 17 16 20 20 O 1.35906 * 119.98616 * 179.97438 * 19 18 17 21 21 C 1.35677 * 117.99670 * 250.20676 * 20 19 18 22 22 C 1.39126 * 120.07278 * 185.82857 * 21 20 19 23 23 N 1.31961 * 119.91384 * 179.97438 * 22 21 20 24 24 C 1.32246 * 120.07032 * 359.97438 * 23 22 21 25 25 C 1.38199 * 120.14600 * 359.97249 * 24 23 22 26 26 N 1.32233 * 120.08449 * 359.79880 * 25 24 23 27 27 C 1.38507 * 120.02548 * 0.02562 * 19 18 17 28 28 H 1.09008 * 109.46994 * 300.00285 * 1 2 3 29 29 H 1.09001 * 109.47207 * 59.99672 * 1 2 3 30 30 H 1.08997 * 109.47276 * 180.02562 * 1 2 3 31 31 H 0.96992 * 120.00217 * 180.02562 * 7 6 4 32 32 H 0.96992 * 119.99849 * 94.99381 * 12 2 1 33 33 H 1.07990 * 120.02041 * 359.97438 * 16 15 13 34 34 H 1.08002 * 119.89801 * 180.25239 * 17 16 15 35 35 H 1.08004 * 119.87782 * 179.69695 * 18 17 16 36 36 H 1.08007 * 120.03910 * 359.95065 * 22 21 20 37 37 H 1.07996 * 119.92728 * 180.02562 * 24 23 22 38 38 H 1.08001 * 119.96019 * 180.02562 * 25 24 23 39 39 H 1.08004 * 120.10189 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 3.1483 -2.2859 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1471 -0.1860 -4.8161 12 7 2.0184 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8584 1.1614 2.4116 15 6 2.6394 -0.7152 3.5646 16 6 2.9662 -2.0712 3.5062 17 6 3.4309 -2.7172 4.6333 18 6 3.5634 -2.0286 5.8251 19 6 3.2355 -0.6813 5.8942 20 8 3.3672 -0.0096 7.0683 21 6 2.2366 0.3721 7.7140 22 6 2.3189 1.1657 8.8538 23 7 1.2172 1.5356 9.4790 24 6 0.0362 1.1532 9.0229 25 6 -0.0486 0.3659 7.8903 26 7 1.0512 -0.0045 7.2566 27 6 2.7731 -0.0219 4.7674 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7082 1.1608 -3.4844 32 1 2.2489 -1.6316 1.1527 33 1 2.8592 -2.6133 2.5783 34 1 3.6872 -3.7653 4.5859 35 1 3.9230 -2.5408 6.7053 36 1 3.2832 1.4782 9.2266 37 1 -0.8639 1.4576 9.5362 38 1 -1.0147 0.0557 7.5203 39 1 2.5172 1.0261 4.8199 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076586785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:19 Heat of formation + Delta-G solvation = -9.294126 kcal Electronic energy + Delta-G solvation = -24528.457689 eV Core-core repulsion = 20822.217559 eV Total energy + Delta-G solvation = -3706.240130 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57623 -41.31912 -40.39175 -38.50913 -36.80441 -35.19213 -34.45712 -32.69084 -32.25671 -31.24596 -30.23940 -27.37837 -26.16158 -25.45165 -25.25913 -23.39230 -22.81305 -21.43221 -20.33811 -19.16991 -18.78692 -17.91341 -17.73881 -17.66768 -17.06919 -17.00584 -16.43830 -16.05940 -15.88623 -15.64158 -15.51984 -14.90592 -14.79481 -14.48115 -14.08426 -13.89525 -13.77737 -13.38785 -13.01109 -12.93259 -12.87486 -12.76577 -12.71197 -12.55293 -12.30758 -12.14239 -12.11488 -11.13705 -10.96151 -10.63247 -10.35604 -10.17960 -10.13029 -9.81594 -9.68639 -8.19423 -6.37510 -0.34709 -0.21433 -0.04185 0.11107 1.44793 1.45634 1.57385 1.58781 1.99205 2.28858 2.50762 2.61695 2.79834 2.99696 3.11494 3.29648 3.42850 3.68417 3.77779 3.96475 4.07103 4.13812 4.20272 4.32476 4.47169 4.55311 4.68399 4.75540 4.87578 5.04241 5.09713 5.15345 5.20477 5.24260 5.38810 5.53639 5.58141 5.65148 5.86155 6.05110 6.10795 6.17751 6.65901 6.69091 6.84352 7.27229 7.43154 8.87551 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002815 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.546817 B = 9944.052166 C =10674.443813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.003 1.003 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.693 5.693 13 C 0.539 3.461 14 O -0.601 6.601 15 C -0.129 4.129 16 C -0.079 4.079 17 C -0.094 4.094 18 C -0.085 4.085 19 C 0.072 3.928 20 O -0.242 6.242 21 C 0.245 3.755 22 C 0.046 3.954 23 N -0.422 5.422 24 C 0.019 3.981 25 C 0.089 3.911 26 N -0.511 5.511 27 C -0.078 4.078 28 H 0.008 0.992 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.406 0.594 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.198 0.802 37 H 0.211 0.789 38 H 0.201 0.799 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -9.290 22.522 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.180 1.180 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.341 5.341 13 C 0.327 3.673 14 O -0.484 6.484 15 C -0.132 4.132 16 C -0.097 4.097 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.029 3.971 20 O -0.147 6.147 21 C 0.065 3.935 22 C -0.116 4.116 23 N -0.137 5.137 24 C -0.140 4.140 25 C -0.070 4.070 26 N -0.239 5.239 27 C -0.098 4.098 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.171 0.829 34 H 0.200 0.800 35 H 0.182 0.818 36 H 0.215 0.785 37 H 0.228 0.772 38 H 0.218 0.782 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.166 -8.311 22.441 24.029 hybrid contribution -0.041 0.090 -1.298 1.302 sum 2.125 -8.221 21.143 22.785 Atomic orbital electron populations 1.21907 0.98116 0.99706 0.99540 1.18420 0.91277 0.91952 0.81701 0.98464 1.21554 1.32701 1.13675 0.90505 0.90450 1.25844 0.94810 0.95572 1.02456 1.70064 1.36970 1.24000 1.24651 0.85240 0.78102 0.78522 0.78126 1.18044 1.20344 1.21111 1.46182 1.64386 1.14263 1.09298 1.18851 0.77800 0.86317 0.84352 1.90693 1.53651 1.18101 1.85968 1.19773 1.05044 0.95809 0.92580 1.21738 0.95285 0.91721 1.01003 1.21418 0.97598 1.02017 0.90155 1.21642 0.97735 0.90251 1.00714 1.18514 1.03609 0.91965 0.82973 1.84644 1.26917 1.69722 1.33407 1.21416 0.85969 0.93872 0.92194 1.23225 1.00317 0.96175 0.91848 1.68578 0.98869 1.17684 1.28543 1.24250 0.97432 0.96541 0.95757 1.24156 0.97282 0.93432 0.92159 1.68138 0.99261 1.23694 1.32802 1.21165 0.96974 0.99606 0.92032 0.97257 0.91223 0.93690 0.92492 0.75666 0.82897 0.79967 0.81792 0.78502 0.77209 0.78246 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.29 2.56 44.24 0.11 14.40 16 3 H 0.00 -0.16 7.58 -2.38 -0.02 -0.18 16 4 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 5 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.98 41.63 29.54 68.60 2.03 43.66 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 10 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.69 -29.82 5.02 -448.96 -2.25 -32.08 16 13 C 0.54 23.66 7.74 86.79 0.67 24.33 16 14 O -0.60 -32.19 16.01 -3.87 -0.06 -32.25 16 15 C -0.13 -4.32 5.87 -20.10 -0.12 -4.44 16 16 C -0.08 -1.86 9.54 22.54 0.21 -1.65 16 17 C -0.09 -1.60 10.03 22.22 0.22 -1.38 16 18 C -0.09 -1.63 9.98 22.42 0.22 -1.41 16 19 C 0.07 1.90 5.26 22.48 0.12 2.02 16 20 O -0.24 -6.14 9.98 -33.46 -0.33 -6.47 16 21 C 0.25 5.92 7.33 84.80 0.62 6.54 16 22 C 0.05 0.91 11.18 84.89 0.95 1.86 16 23 N -0.42 -8.10 10.49 -194.80 -2.04 -10.14 16 24 C 0.02 0.28 11.21 84.62 0.95 1.23 16 25 C 0.09 1.56 11.22 84.62 0.95 2.51 16 26 N -0.51 -12.76 9.19 -308.16 -2.83 -15.60 16 27 C -0.08 -2.59 8.95 22.63 0.20 -2.39 16 28 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 30 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.41 14.23 6.57 -92.71 -0.61 13.62 16 33 H 0.15 2.98 6.40 -2.92 -0.02 2.97 16 34 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 35 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.10 4.02 7.65 -2.91 -0.02 4.00 16 Total: -1.00 -77.14 343.91 1.69 -75.45 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.49 Total: 22.22 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 6.46 Total: 7.87 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -6.89 Total: -110.48 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.40 Total: -38.72 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -77.14 1.69 -75.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076586785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.158 kcal (2) G-P(sol) polarization free energy of solvation -77.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds