Wall clock time and date at job start Tue Mar 31 2020 10:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46791 * 2 1 4 4 C 1.50699 * 109.47097 * 239.99872 * 2 1 3 5 5 H 1.07996 * 119.99950 * 239.99991 * 4 2 1 6 6 C 1.37878 * 119.99890 * 60.00240 * 4 2 1 7 7 N 1.31508 * 119.99998 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46777 * 89.99909 * 8 6 4 10 10 H 1.48499 * 109.46880 * 209.99796 * 8 6 4 11 11 H 1.48497 * 109.47253 * 329.99889 * 8 6 4 12 12 N 1.46501 * 109.47109 * 119.99834 * 2 1 3 13 13 C 1.34780 * 119.99857 * 275.00196 * 12 2 1 14 14 O 1.21358 * 119.99929 * 359.97438 * 13 12 2 15 15 C 1.49319 * 119.99600 * 180.02562 * 13 12 2 16 16 O 1.21381 * 120.00375 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99600 * 179.97438 * 15 13 12 18 18 C 1.39451 * 119.99852 * 185.52352 * 17 15 13 19 19 C 1.37847 * 120.25675 * 24.88377 * 18 17 15 20 20 C 1.39131 * 120.82465 * 180.02562 * 19 18 17 21 21 C 1.36223 * 120.97175 * 359.70837 * 20 19 18 22 22 C 1.40413 * 119.92380 * 0.02944 * 21 20 19 23 23 C 1.40810 * 121.29648 * 179.97438 * 22 21 20 24 24 C 1.36573 * 118.15372 * 180.02562 * 23 22 21 25 25 C 1.39315 * 119.93351 * 0.02562 * 24 23 22 26 26 N 1.31114 * 121.71297 * 0.02562 * 25 24 23 27 27 C 1.33547 * 121.34028 * 359.95097 * 26 25 24 28 28 H 1.09005 * 109.47575 * 300.00231 * 1 2 3 29 29 H 1.09003 * 109.47211 * 60.00272 * 1 2 3 30 30 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99965 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00094 * 95.00342 * 12 2 1 33 33 H 0.96996 * 120.00576 * 5.52257 * 17 15 13 34 34 H 1.08003 * 119.59113 * 359.78588 * 19 18 17 35 35 H 1.08002 * 119.51883 * 179.73967 * 20 19 18 36 36 H 1.08007 * 120.03596 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.92381 * 0.02562 * 23 22 21 38 38 H 1.08003 * 120.03677 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.15166 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1594 2.4115 15 6 2.6453 -0.7219 3.5762 16 8 2.9340 -1.8996 3.5217 17 7 2.7744 -0.0494 4.7371 18 6 3.3471 -0.6739 5.8446 19 6 4.2213 -1.7259 5.6740 20 6 4.7990 -2.3579 6.7706 21 6 4.5215 -1.9509 8.0407 22 6 3.6402 -0.8793 8.2561 23 6 3.3325 -0.4352 9.5564 24 6 2.4667 0.6123 9.6916 25 6 1.9152 1.2090 8.5599 26 7 2.2037 0.7916 7.3509 27 6 3.0431 -0.2274 7.1496 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1608 -3.4844 32 1 2.2491 -1.6317 1.1527 33 1 2.4691 0.8690 4.8022 34 1 4.4577 -2.0665 4.6767 35 1 5.4779 -3.1829 6.6127 36 1 4.9788 -2.4521 8.8811 37 1 3.7690 -0.9098 10.4227 38 1 2.2092 0.9774 10.6749 39 1 1.2317 2.0362 8.6815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123062797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:31 Heat of formation + Delta-G solvation = -9.050324 kcal Electronic energy + Delta-G solvation = -24573.405279 eV Core-core repulsion = 20867.175721 eV Total energy + Delta-G solvation = -3706.229558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38925 -40.22100 -38.36545 -37.03151 -35.54562 -34.82118 -32.85820 -32.39575 -30.77365 -29.55621 -29.02959 -25.37720 -25.07089 -24.30559 -23.93191 -22.03927 -20.72307 -19.75962 -18.93543 -18.36941 -17.56662 -17.00141 -16.39569 -16.09042 -15.67201 -15.39041 -15.12515 -14.72372 -14.61694 -14.28856 -14.07951 -13.62204 -13.52563 -13.31053 -13.14080 -12.49436 -12.43285 -12.10819 -11.80993 -11.71040 -11.26120 -11.17888 -11.01986 -10.97768 -10.78321 -10.37525 -10.27732 -10.01628 -9.81966 -9.15871 -9.10261 -8.96998 -8.63588 -8.14654 -7.87055 -6.17840 -4.27565 0.13245 0.58449 1.48483 2.00085 2.60331 2.76625 3.23614 3.30392 3.33419 3.62685 3.90372 3.98362 4.03157 4.32359 4.40817 4.48901 4.63453 4.68944 4.95672 5.00531 5.11762 5.15343 5.20320 5.36909 5.57995 5.69405 5.85693 5.98637 6.08647 6.28169 6.34436 6.70335 6.71967 6.84654 7.01713 7.08211 7.21413 7.40166 7.60686 7.62963 7.76819 7.88039 8.04581 8.42025 8.59940 8.84115 9.39465 10.88225 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.002709 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.680731 B =10334.617365 C =11127.798625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.531 6.531 15 C 0.506 3.494 16 O -0.503 6.503 17 N -0.633 5.633 18 C 0.177 3.823 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.081 4.081 23 C -0.061 4.061 24 C -0.172 4.172 25 C 0.126 3.874 26 N -0.470 5.470 27 C 0.107 3.893 28 H 0.017 0.983 29 H 0.095 0.905 30 H 0.030 0.970 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.431 0.569 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 -3.217 24.073 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.316 5.316 13 C 0.274 3.726 14 O -0.409 6.409 15 C 0.290 3.710 16 O -0.377 6.377 17 N -0.277 5.277 18 C 0.080 3.920 19 C -0.151 4.151 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.084 4.084 23 C -0.087 4.087 24 C -0.192 4.192 25 C -0.047 4.047 26 N -0.178 5.178 27 C -0.016 4.016 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.270 0.730 34 H 0.173 0.827 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.991 -2.700 22.938 23.630 hybrid contribution 0.524 -0.825 0.046 0.979 sum 5.516 -3.525 22.984 23.898 Atomic orbital electron populations 1.22107 0.97803 0.99588 1.01262 1.18991 0.91469 0.94165 0.79277 0.92739 1.21189 1.32832 1.13479 0.90009 0.91723 1.24879 0.94704 0.94914 0.99103 1.69892 1.35686 1.22353 1.24091 0.86388 0.79263 0.79242 0.81896 1.20443 1.21014 1.19745 1.46498 1.61348 1.14503 1.09275 1.19578 0.81325 0.87314 0.84424 1.90746 1.50429 1.15153 1.84590 1.21049 0.78236 0.86869 0.84847 1.90680 1.47230 1.15191 1.84648 1.43093 1.58025 1.18069 1.08500 1.17534 0.94409 0.95514 0.84574 1.21486 0.95573 0.96426 1.01660 1.20817 0.98516 0.99045 0.91784 1.20901 0.99054 0.96912 0.97793 1.18601 0.98874 0.97518 0.93396 1.21445 0.95770 0.95458 0.96014 1.21889 0.98951 0.97789 1.00591 1.22922 0.96751 0.97891 0.87149 1.67847 1.12740 1.11592 1.25574 1.18531 0.96456 0.94806 0.91804 0.96426 0.88683 0.95083 0.92430 0.76321 0.72966 0.82664 0.84985 0.85218 0.84278 0.84492 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.61 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.15 16 4 C -0.54 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.67 -14.40 5.06 -55.41 -0.28 -14.68 16 13 C 0.50 10.17 7.85 -11.65 -0.09 10.08 16 14 O -0.53 -12.08 16.15 5.49 0.09 -12.00 16 15 C 0.51 8.95 7.68 -11.65 -0.09 8.86 16 16 O -0.50 -9.10 13.64 5.47 0.07 -9.02 16 17 N -0.63 -9.97 5.26 -10.06 -0.05 -10.02 16 18 C 0.18 2.57 6.47 -83.40 -0.54 2.03 16 19 C -0.13 -1.70 8.70 -39.39 -0.34 -2.05 16 20 C -0.08 -0.84 9.94 -39.98 -0.40 -1.24 16 21 C -0.13 -1.17 9.76 -39.49 -0.39 -1.55 16 22 C -0.08 -0.87 5.74 -106.82 -0.61 -1.49 16 23 C -0.06 -0.48 9.89 -39.21 -0.39 -0.87 16 24 C -0.17 -1.26 10.03 -39.78 -0.40 -1.66 16 25 C 0.13 1.18 11.15 -17.46 -0.19 0.98 16 26 N -0.47 -6.06 9.77 -10.85 -0.11 -6.17 16 27 C 0.11 1.43 6.62 -84.69 -0.56 0.87 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.40 8.02 8.01 -40.82 -0.33 7.69 16 33 H 0.43 6.69 7.84 -40.82 -0.32 6.37 16 34 H 0.16 2.22 5.73 -52.48 -0.30 1.91 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 37 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -31.06 339.58 -7.94 -39.00 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.16 Total: 11.78 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -4.23 Total: 4.32 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.19 Total: -54.74 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.16 Total: -21.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.06 -7.94 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123062797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.953 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds