Wall clock time and date at job start Tue Mar 31 2020 10:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46791 * 2 1 4 4 C 1.50699 * 109.47097 * 239.99872 * 2 1 3 5 5 H 1.07996 * 119.99950 * 239.99991 * 4 2 1 6 6 C 1.37878 * 119.99890 * 60.00240 * 4 2 1 7 7 N 1.31508 * 119.99998 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99741 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46777 * 89.99909 * 8 6 4 10 10 H 1.48499 * 109.46880 * 209.99796 * 8 6 4 11 11 H 1.48497 * 109.47253 * 329.99889 * 8 6 4 12 12 N 1.46501 * 109.47109 * 119.99834 * 2 1 3 13 13 C 1.34780 * 119.99857 * 275.00196 * 12 2 1 14 14 O 1.21358 * 119.99929 * 359.97438 * 13 12 2 15 15 C 1.49319 * 119.99600 * 180.02562 * 13 12 2 16 16 O 1.21381 * 120.00375 * 359.97438 * 15 13 12 17 17 N 1.34780 * 119.99600 * 179.97438 * 15 13 12 18 18 C 1.39451 * 119.99852 * 185.52352 * 17 15 13 19 19 C 1.37847 * 120.25675 * 24.88377 * 18 17 15 20 20 C 1.39131 * 120.82465 * 180.02562 * 19 18 17 21 21 C 1.36223 * 120.97175 * 359.70837 * 20 19 18 22 22 C 1.40413 * 119.92380 * 0.02944 * 21 20 19 23 23 C 1.40810 * 121.29648 * 179.97438 * 22 21 20 24 24 C 1.36573 * 118.15372 * 180.02562 * 23 22 21 25 25 C 1.39315 * 119.93351 * 0.02562 * 24 23 22 26 26 N 1.31114 * 121.71297 * 0.02562 * 25 24 23 27 27 C 1.33547 * 121.34028 * 359.95097 * 26 25 24 28 28 H 1.09005 * 109.47575 * 300.00231 * 1 2 3 29 29 H 1.09003 * 109.47211 * 60.00272 * 1 2 3 30 30 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99965 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00094 * 95.00342 * 12 2 1 33 33 H 0.96996 * 120.00576 * 5.52257 * 17 15 13 34 34 H 1.08003 * 119.59113 * 359.78588 * 19 18 17 35 35 H 1.08002 * 119.51883 * 179.73967 * 20 19 18 36 36 H 1.08007 * 120.03596 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.92381 * 0.02562 * 23 22 21 38 38 H 1.08003 * 120.03677 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.15166 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1594 2.4115 15 6 2.6453 -0.7219 3.5762 16 8 2.9340 -1.8996 3.5217 17 7 2.7744 -0.0494 4.7371 18 6 3.3471 -0.6739 5.8446 19 6 4.2213 -1.7259 5.6740 20 6 4.7990 -2.3579 6.7706 21 6 4.5215 -1.9509 8.0407 22 6 3.6402 -0.8793 8.2561 23 6 3.3325 -0.4352 9.5564 24 6 2.4667 0.6123 9.6916 25 6 1.9152 1.2090 8.5599 26 7 2.2037 0.7916 7.3509 27 6 3.0431 -0.2274 7.1496 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1608 -3.4844 32 1 2.2491 -1.6317 1.1527 33 1 2.4691 0.8690 4.8022 34 1 4.4577 -2.0665 4.6767 35 1 5.4779 -3.1829 6.6127 36 1 4.9788 -2.4521 8.8811 37 1 3.7690 -0.9098 10.4227 38 1 2.2092 0.9774 10.6749 39 1 1.2317 2.0362 8.6815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123062797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:30 Heat of formation + Delta-G solvation = -30.632966 kcal Electronic energy + Delta-G solvation = -24574.341173 eV Core-core repulsion = 20867.175721 eV Total energy + Delta-G solvation = -3707.165452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.43249 -41.42608 -39.90194 -37.97197 -37.09988 -36.24192 -34.40044 -33.63844 -31.53984 -31.17952 -30.28151 -27.40794 -26.44852 -25.18935 -24.72045 -23.36090 -22.12610 -21.35854 -20.39262 -19.28968 -18.71069 -18.13146 -17.67554 -17.61946 -17.05689 -16.94836 -16.47781 -15.94756 -15.70936 -15.48994 -15.16918 -14.95467 -14.76802 -14.47421 -14.27378 -13.92109 -13.79632 -13.36903 -13.09640 -13.01059 -12.91649 -12.78964 -12.57781 -12.37141 -12.31833 -12.15080 -11.99014 -11.18423 -10.93214 -10.75658 -10.64929 -10.44893 -10.03494 -9.78975 -8.80407 -8.21786 -6.39546 -0.67726 -0.18071 0.22169 1.01299 1.23083 1.45338 1.45817 1.56843 1.94520 2.12656 2.37486 2.63995 3.09009 3.09405 3.22570 3.40060 3.71831 3.80258 3.96571 4.08304 4.22242 4.30479 4.51463 4.64250 4.66437 4.75197 4.85233 4.96425 4.98423 5.09805 5.19847 5.26099 5.26589 5.39203 5.45682 5.56925 5.61827 5.72541 5.88578 5.93436 6.00321 6.41336 6.61140 6.69340 6.92015 7.01733 7.32616 8.84633 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.028988 B = 0.002709 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.680731 B =10334.617365 C =11127.798625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.015 0.985 4 C -0.553 4.553 5 H 0.072 0.928 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.667 5.667 13 C 0.496 3.504 14 O -0.557 6.557 15 C 0.515 3.485 16 O -0.512 6.512 17 N -0.623 5.623 18 C 0.132 3.868 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.101 4.101 22 C -0.101 4.101 23 C -0.053 4.053 24 C -0.168 4.168 25 C 0.123 3.877 26 N -0.517 5.517 27 C 0.087 3.913 28 H 0.018 0.982 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.268 0.732 32 H 0.411 0.589 33 H 0.428 0.572 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.534 -4.751 27.162 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.032 0.968 4 C -0.591 4.591 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.317 5.317 13 C 0.276 3.724 14 O -0.437 6.437 15 C 0.297 3.703 16 O -0.387 6.387 17 N -0.266 5.266 18 C 0.036 3.964 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.104 4.104 23 C -0.078 4.078 24 C -0.187 4.187 25 C -0.049 4.049 26 N -0.226 5.226 27 C -0.035 4.035 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.267 0.733 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.198 0.802 38 H 0.195 0.805 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.093 -4.254 26.085 27.123 hybrid contribution 0.190 -0.259 -0.651 0.726 sum 6.283 -4.512 25.434 26.584 Atomic orbital electron populations 1.21940 0.97459 0.99862 1.00306 1.18645 0.91710 0.92416 0.80650 0.96751 1.21482 1.33165 1.13822 0.90632 0.91012 1.25757 0.94720 0.95530 1.02153 1.70022 1.36574 1.23629 1.24896 0.85311 0.78931 0.78083 0.77829 1.19584 1.20854 1.19052 1.46249 1.61744 1.14808 1.08872 1.20052 0.80324 0.87002 0.85065 1.90720 1.51340 1.16430 1.85206 1.20249 0.78868 0.86583 0.84566 1.90675 1.48174 1.15117 1.84754 1.42909 1.57530 1.17800 1.08386 1.17816 0.96610 0.97269 0.84662 1.21544 0.95579 0.96218 1.02087 1.21093 0.99281 0.99942 0.91403 1.21398 0.96826 0.95275 0.98529 1.18990 0.99306 0.98083 0.94018 1.21946 0.95001 0.95066 0.95823 1.22309 0.97822 0.97061 1.01493 1.23546 0.96320 0.98033 0.87021 1.67823 1.14314 1.12750 1.27679 1.18686 0.97314 0.95569 0.91933 0.96287 0.90630 0.94043 0.92262 0.75278 0.73288 0.84467 0.82285 0.81021 0.80216 0.80542 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.96 9.26 71.98 0.67 -6.30 16 2 C 0.27 14.08 2.56 44.24 0.11 14.19 16 3 H 0.01 0.88 7.58 -2.38 -0.02 0.86 16 4 C -0.55 -29.71 8.73 25.60 0.22 -29.49 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 N -0.67 -29.95 5.06 -447.56 -2.27 -32.22 16 13 C 0.50 21.42 7.85 87.23 0.68 22.11 16 14 O -0.56 -26.84 16.15 -3.27 -0.05 -26.89 16 15 C 0.51 19.16 7.68 87.23 0.67 19.83 16 16 O -0.51 -19.23 13.64 -3.34 -0.05 -19.27 16 17 N -0.62 -20.83 5.26 -304.09 -1.60 -22.43 16 18 C 0.13 3.97 6.47 38.57 0.25 4.22 16 19 C -0.13 -3.55 8.70 22.39 0.19 -3.35 16 20 C -0.10 -1.83 9.94 22.01 0.22 -1.61 16 21 C -0.10 -1.51 9.76 22.33 0.22 -1.29 16 22 C -0.10 -1.92 5.74 -21.29 -0.12 -2.04 16 23 C -0.05 -0.60 9.89 22.51 0.22 -0.38 16 24 C -0.17 -1.79 10.03 22.14 0.22 -1.57 16 25 C 0.12 2.08 11.15 85.06 0.95 3.03 16 26 N -0.52 -13.34 9.77 -188.26 -1.84 -15.18 16 27 C 0.09 2.31 6.62 40.45 0.27 2.58 16 28 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 4.15 6.07 -2.39 -0.01 4.13 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.41 16.88 8.01 -92.71 -0.74 16.14 16 33 H 0.43 14.35 7.84 -92.71 -0.73 13.62 16 34 H 0.14 4.10 5.73 -2.91 -0.02 4.08 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 36 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -70.94 339.58 1.35 -69.59 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.35 Total: 32.33 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 5.23 Total: 21.40 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.46 Total: -121.40 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.10 Total: -46.16 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -70.94 1.35 -69.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123062797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds