Wall clock time and date at job start Tue Mar 31 2020 10:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47436 * 2 1 4 4 C 1.46900 * 110.99396 * 299.34467 * 3 2 1 5 5 C 1.50696 * 109.47261 * 293.55896 * 4 3 2 6 6 H 1.07997 * 120.00340 * 354.97007 * 5 4 3 7 7 C 1.37881 * 120.00362 * 174.96860 * 5 4 3 8 8 N 1.31518 * 119.99507 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00177 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47090 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46893 * 119.99871 * 9 7 5 12 12 H 1.48498 * 109.46938 * 239.99930 * 9 7 5 13 13 C 1.46898 * 111.00048 * 63.29339 * 3 2 1 14 14 C 1.50701 * 109.46952 * 66.05242 * 13 3 2 15 15 C 1.38250 * 119.93286 * 259.99911 * 14 13 3 16 16 C 1.38235 * 120.15389 * 180.02562 * 15 14 13 17 17 C 1.38591 * 120.01816 * 359.97438 * 16 15 14 18 18 O 1.35991 * 120.06373 * 180.02562 * 17 16 15 19 19 C 1.42906 * 117.00471 * 359.97438 * 18 17 16 20 20 C 1.39100 * 119.86948 * 0.27259 * 17 16 15 21 21 O 1.36027 * 120.07808 * 179.72396 * 20 17 16 22 22 C 1.42897 * 116.99623 * 90.00434 * 21 20 17 23 23 C 1.38335 * 119.93302 * 80.02070 * 14 13 3 24 24 Cl 1.73603 * 120.01117 * 359.95584 * 23 14 13 25 25 H 1.09006 * 109.47064 * 60.64971 * 1 2 3 26 26 H 1.09000 * 109.47158 * 180.64661 * 1 2 3 27 27 H 1.08997 * 109.47444 * 300.65517 * 1 2 3 28 28 H 1.08998 * 109.47548 * 239.98997 * 2 1 3 29 29 H 1.09003 * 109.46935 * 119.99580 * 2 1 3 30 30 H 1.09002 * 109.47702 * 53.56204 * 4 3 2 31 31 H 1.09002 * 109.46953 * 173.56023 * 4 3 2 32 32 H 0.97000 * 119.99519 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47539 * 306.04931 * 13 3 2 34 34 H 1.09000 * 109.47190 * 186.04910 * 13 3 2 35 35 H 1.08000 * 119.92531 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.98878 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.46591 * 300.00108 * 19 18 17 38 38 H 1.08993 * 109.47445 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46969 * 59.99413 * 19 18 17 40 40 H 1.08999 * 109.47036 * 299.99641 * 22 21 20 41 41 H 1.08995 * 109.47425 * 60.00262 * 22 21 20 42 42 H 1.09001 * 109.46542 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5615 2.1052 -1.1955 5 6 2.2043 1.5065 -2.4199 6 1 2.9462 0.7287 -2.3147 7 6 1.8454 1.9515 -3.6746 8 7 0.9423 2.8989 -3.8027 9 14 2.6418 1.2087 -5.1923 10 1 3.6178 0.1683 -4.7802 11 1 1.5962 0.5942 -6.0494 12 1 3.3437 2.2728 -5.9539 13 6 1.6141 2.0868 1.2251 14 6 2.3020 1.4634 2.4122 15 6 1.6197 0.5653 3.2117 16 6 2.2461 -0.0088 4.3021 17 6 3.5612 0.3148 4.5960 18 8 4.1785 -0.2499 5.6681 19 6 3.4113 -1.1685 6.4491 20 6 4.2469 1.2222 3.7952 21 8 5.5361 1.5471 4.0830 22 6 6.5563 0.7458 3.4838 23 6 3.6148 1.7913 2.7000 24 17 4.4687 2.9189 1.6936 25 1 -0.3633 0.5037 -0.8958 26 1 -0.3633 -1.0276 0.0116 27 1 -0.3634 0.5239 0.8840 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4777 2.0222 -1.2767 31 1 1.8403 3.1560 -1.1158 32 1 0.6900 3.2123 -4.6854 33 1 0.5340 2.0080 1.3484 34 1 1.8959 3.1372 1.1523 35 1 0.5949 0.3117 2.9839 36 1 1.7104 -0.7098 4.9251 37 1 2.5344 -0.6602 6.8501 38 1 4.0207 -1.5440 7.2710 39 1 3.0933 -2.0013 5.8219 40 1 6.4376 -0.2903 3.8008 41 1 6.4746 0.8054 2.3985 42 1 7.5349 1.1109 3.7954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127679166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:36 Heat of formation + Delta-G solvation = -44.838549 kcal Electronic energy + Delta-G solvation = -24548.862827 eV Core-core repulsion = 20942.188869 eV Total energy + Delta-G solvation = -3606.673958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59421 -38.37484 -37.94665 -36.34153 -35.87552 -32.61789 -31.00263 -30.37526 -29.25278 -27.90821 -26.94903 -26.48070 -24.51833 -23.09935 -22.45952 -21.39031 -19.31717 -18.36634 -17.05313 -16.99577 -16.15862 -16.13511 -15.23771 -15.08223 -14.97732 -14.92084 -14.61647 -14.17174 -14.07980 -13.57488 -13.05752 -12.78086 -12.60750 -12.52696 -11.94142 -11.87748 -11.79371 -11.57140 -11.49874 -11.25258 -11.03874 -10.95419 -10.73563 -10.62540 -10.50656 -10.43060 -10.04809 -9.91643 -9.71254 -9.16939 -8.56697 -8.40765 -8.09784 -7.13662 -5.99658 -3.99780 1.03891 1.25694 2.32729 3.20558 3.32207 3.33473 3.40081 3.45069 3.87689 4.45700 4.68583 4.83767 4.92302 4.97850 5.05145 5.15042 5.25755 5.29784 5.35591 5.36942 5.37560 5.43017 5.68092 5.77247 5.83556 5.99630 6.03423 6.08363 6.15546 6.21648 6.39045 6.51243 6.54362 6.72245 6.92851 6.99713 7.34829 7.46055 7.54739 7.84781 8.13347 8.23439 8.58598 9.08669 9.64062 11.11024 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003998 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.577155 B = 7002.349733 C = 7695.600910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.522 5.522 4 C 0.190 3.810 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.087 3.913 14 C -0.077 4.077 15 C -0.070 4.070 16 C -0.197 4.197 17 C 0.112 3.888 18 O -0.307 6.307 19 C 0.026 3.974 20 C 0.064 3.936 21 O -0.318 6.318 22 C 0.035 3.965 23 C 0.003 3.997 24 Cl -0.029 7.029 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.003 0.997 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -7.067 19.111 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.068 4.068 3 N -0.246 5.246 4 C 0.065 3.935 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.041 4.041 14 C -0.079 4.079 15 C -0.089 4.089 16 C -0.216 4.216 17 C 0.066 3.934 18 O -0.220 6.220 19 C -0.069 4.069 20 C 0.019 3.981 21 O -0.234 6.234 22 C -0.060 4.060 23 C -0.025 4.025 24 Cl 0.000 7.000 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.185 -6.689 19.035 20.606 hybrid contribution -0.762 -0.604 -1.059 1.438 sum 3.423 -7.293 17.976 19.699 Atomic orbital electron populations 1.22396 0.99497 1.00793 1.02053 1.21971 0.91980 0.91627 1.01257 1.62373 1.59129 1.01708 1.01348 1.19789 0.94454 0.93652 0.85582 1.21166 1.22231 1.20564 0.89865 0.91916 1.24963 0.95303 0.95302 0.99026 1.69968 1.31936 1.28786 1.23250 0.86502 0.79197 0.79106 0.82989 1.19703 1.21231 1.21104 1.21038 0.96232 0.98426 0.88403 1.19756 0.92229 0.98149 0.97756 1.20872 1.00013 0.94805 0.93180 1.21136 0.93895 1.05229 1.01326 1.19094 0.91853 0.93493 0.89007 1.86140 1.40516 1.57556 1.37772 1.23079 0.97094 0.91831 0.94910 1.17543 0.86298 0.99145 0.95130 1.86101 1.10977 1.55669 1.70659 1.22996 0.90130 0.94789 0.98045 1.20901 0.93386 0.96341 0.91889 1.98399 1.76423 1.58151 1.66999 0.91084 0.93568 0.93831 0.90163 0.93156 0.97891 0.95646 0.93097 0.94134 0.89992 0.84861 0.84819 0.92601 0.88265 0.92628 0.93721 0.93110 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 9.25 37.16 0.34 -2.90 16 2 C 0.06 1.13 5.63 -3.83 -0.02 1.11 16 3 N -0.52 -10.83 4.69 -237.52 -1.11 -11.94 16 4 C 0.19 4.77 4.49 -4.98 -0.02 4.75 16 5 C -0.50 -13.74 8.41 -34.44 -0.29 -14.03 16 6 H 0.06 1.74 7.33 -52.49 -0.38 1.35 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.09 1.55 4.31 -4.98 -0.02 1.52 16 14 C -0.08 -1.22 4.58 -104.58 -0.48 -1.70 16 15 C -0.07 -0.91 8.63 -39.58 -0.34 -1.26 16 16 C -0.20 -2.32 9.04 -39.45 -0.36 -2.68 16 17 C 0.11 1.51 6.70 -39.13 -0.26 1.25 16 18 O -0.31 -3.75 10.28 -34.24 -0.35 -4.10 16 19 C 0.03 0.19 9.81 101.05 0.99 1.19 16 20 C 0.06 0.99 5.73 -39.10 -0.22 0.77 16 21 O -0.32 -4.82 9.66 -34.35 -0.33 -5.16 16 22 C 0.03 0.42 11.13 101.05 1.12 1.55 16 23 C 0.00 0.05 6.32 -39.39 -0.25 -0.20 16 24 Cl -0.03 -0.51 27.05 -51.86 -1.40 -1.91 16 25 H 0.07 1.44 6.32 -51.93 -0.33 1.11 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.67 6.01 -51.93 -0.31 0.36 16 28 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 29 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 30 H 0.00 0.09 6.01 -51.93 -0.31 -0.22 16 31 H 0.03 0.69 7.92 -51.93 -0.41 0.28 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.04 0.68 5.95 -51.93 -0.31 0.38 16 34 H 0.08 1.52 7.13 -51.93 -0.37 1.15 16 35 H 0.13 1.52 7.72 -52.49 -0.41 1.11 16 36 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 37 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -30.92 353.80 -7.96 -38.88 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.91 Total: -2.84 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 0.10 Total: -9.18 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.38 Total: -37.62 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.68 Total: -9.25 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.40 Total: -1.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.92 -7.96 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127679166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.957 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds