Wall clock time and date at job start Tue Mar 31 2020 10:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46901 * 109.47436 * 2 1 4 4 C 1.46900 * 110.99396 * 299.34467 * 3 2 1 5 5 C 1.50696 * 109.47261 * 293.55896 * 4 3 2 6 6 H 1.07997 * 120.00340 * 354.97007 * 5 4 3 7 7 C 1.37881 * 120.00362 * 174.96860 * 5 4 3 8 8 N 1.31518 * 119.99507 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00177 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47090 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46893 * 119.99871 * 9 7 5 12 12 H 1.48498 * 109.46938 * 239.99930 * 9 7 5 13 13 C 1.46898 * 111.00048 * 63.29339 * 3 2 1 14 14 C 1.50701 * 109.46952 * 66.05242 * 13 3 2 15 15 C 1.38250 * 119.93286 * 259.99911 * 14 13 3 16 16 C 1.38235 * 120.15389 * 180.02562 * 15 14 13 17 17 C 1.38591 * 120.01816 * 359.97438 * 16 15 14 18 18 O 1.35991 * 120.06373 * 180.02562 * 17 16 15 19 19 C 1.42906 * 117.00471 * 359.97438 * 18 17 16 20 20 C 1.39100 * 119.86948 * 0.27259 * 17 16 15 21 21 O 1.36027 * 120.07808 * 179.72396 * 20 17 16 22 22 C 1.42897 * 116.99623 * 90.00434 * 21 20 17 23 23 C 1.38335 * 119.93302 * 80.02070 * 14 13 3 24 24 Cl 1.73603 * 120.01117 * 359.95584 * 23 14 13 25 25 H 1.09006 * 109.47064 * 60.64971 * 1 2 3 26 26 H 1.09000 * 109.47158 * 180.64661 * 1 2 3 27 27 H 1.08997 * 109.47444 * 300.65517 * 1 2 3 28 28 H 1.08998 * 109.47548 * 239.98997 * 2 1 3 29 29 H 1.09003 * 109.46935 * 119.99580 * 2 1 3 30 30 H 1.09002 * 109.47702 * 53.56204 * 4 3 2 31 31 H 1.09002 * 109.46953 * 173.56023 * 4 3 2 32 32 H 0.97000 * 119.99519 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47539 * 306.04931 * 13 3 2 34 34 H 1.09000 * 109.47190 * 186.04910 * 13 3 2 35 35 H 1.08000 * 119.92531 * 0.02562 * 15 14 13 36 36 H 1.07999 * 119.98878 * 179.97438 * 16 15 14 37 37 H 1.09004 * 109.46591 * 300.00108 * 19 18 17 38 38 H 1.08993 * 109.47445 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.46969 * 59.99413 * 19 18 17 40 40 H 1.08999 * 109.47036 * 299.99641 * 22 21 20 41 41 H 1.08995 * 109.47425 * 60.00262 * 22 21 20 42 42 H 1.09001 * 109.46542 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5615 2.1052 -1.1955 5 6 2.2043 1.5065 -2.4199 6 1 2.9462 0.7287 -2.3147 7 6 1.8454 1.9515 -3.6746 8 7 0.9423 2.8989 -3.8027 9 14 2.6418 1.2087 -5.1923 10 1 3.6178 0.1683 -4.7802 11 1 1.5962 0.5942 -6.0494 12 1 3.3437 2.2728 -5.9539 13 6 1.6141 2.0868 1.2251 14 6 2.3020 1.4634 2.4122 15 6 1.6197 0.5653 3.2117 16 6 2.2461 -0.0088 4.3021 17 6 3.5612 0.3148 4.5960 18 8 4.1785 -0.2499 5.6681 19 6 3.4113 -1.1685 6.4491 20 6 4.2469 1.2222 3.7952 21 8 5.5361 1.5471 4.0830 22 6 6.5563 0.7458 3.4838 23 6 3.6148 1.7913 2.7000 24 17 4.4687 2.9189 1.6936 25 1 -0.3633 0.5037 -0.8958 26 1 -0.3633 -1.0276 0.0116 27 1 -0.3634 0.5239 0.8840 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 0.4777 2.0222 -1.2767 31 1 1.8403 3.1560 -1.1158 32 1 0.6900 3.2123 -4.6854 33 1 0.5340 2.0080 1.3484 34 1 1.8959 3.1372 1.1523 35 1 0.5949 0.3117 2.9839 36 1 1.7104 -0.7098 4.9251 37 1 2.5344 -0.6602 6.8501 38 1 4.0207 -1.5440 7.2710 39 1 3.0933 -2.0013 5.8219 40 1 6.4376 -0.2903 3.8008 41 1 6.4746 0.8054 2.3985 42 1 7.5349 1.1109 3.7954 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127679166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:35 Heat of formation + Delta-G solvation = -64.246878 kcal Electronic energy + Delta-G solvation = -24549.704435 eV Core-core repulsion = 20942.188869 eV Total energy + Delta-G solvation = -3607.515566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61813 -39.53294 -39.10652 -37.69508 -37.09372 -34.69529 -32.23932 -31.43667 -30.83531 -29.01490 -28.14218 -27.67806 -25.92205 -24.91260 -23.49320 -22.67523 -20.86280 -19.32532 -18.36971 -18.10845 -17.98872 -17.09291 -16.79074 -16.46600 -16.10117 -16.08596 -15.88991 -15.51909 -15.33133 -14.70133 -14.46666 -14.37074 -13.87896 -13.59779 -13.45844 -13.09791 -12.97219 -12.87926 -12.71769 -12.64575 -12.60084 -12.47766 -12.36692 -12.15395 -11.88466 -11.70454 -11.65069 -11.41267 -11.22132 -10.95790 -10.56456 -9.68378 -9.17766 -8.79863 -8.15045 -6.23103 -0.02328 0.16908 1.16148 1.40012 1.41624 1.54186 2.27913 2.35053 2.43430 2.82397 3.17587 3.50342 3.80413 3.85546 4.01280 4.19048 4.24660 4.34448 4.41487 4.42473 4.44426 4.46443 4.48470 4.63158 4.67042 4.76266 4.78839 4.79084 4.98993 4.99283 5.08337 5.12161 5.28067 5.38798 5.44002 5.45678 5.57082 5.73014 6.10007 6.14241 6.44799 6.54183 6.72161 6.94215 7.45703 8.95251 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.003998 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.577155 B = 7002.349733 C = 7695.600910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 N -0.530 5.530 4 C 0.208 3.792 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.094 3.906 14 C -0.095 4.095 15 C -0.063 4.063 16 C -0.181 4.181 17 C 0.115 3.885 18 O -0.323 6.323 19 C 0.014 3.986 20 C 0.046 3.954 21 O -0.334 6.334 22 C 0.033 3.967 23 C -0.014 4.014 24 Cl -0.054 7.054 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.076 0.924 30 H -0.015 1.015 31 H -0.007 1.007 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -9.590 21.039 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.065 4.065 3 N -0.254 5.254 4 C 0.082 3.918 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 C -0.034 4.034 14 C -0.096 4.096 15 C -0.081 4.081 16 C -0.199 4.199 17 C 0.068 3.932 18 O -0.236 6.236 19 C -0.080 4.080 20 C 0.001 3.999 21 O -0.251 6.251 22 C -0.061 4.061 23 C -0.041 4.041 24 Cl -0.025 7.025 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.002 0.998 31 H 0.011 0.989 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.175 0.825 36 H 0.191 0.809 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.854 -9.233 20.992 23.255 hybrid contribution -0.634 0.109 -1.472 1.606 sum 3.220 -9.124 19.520 21.786 Atomic orbital electron populations 1.22269 0.98016 1.02300 1.01076 1.21952 0.93176 0.90178 1.01214 1.62211 1.59639 1.02543 1.00974 1.19376 0.92989 0.92208 0.87205 1.21430 1.22042 1.20319 0.91097 0.92493 1.25790 0.95804 0.95666 1.02128 1.70085 1.33267 1.30075 1.24055 0.85467 0.78425 0.78383 0.79155 1.19004 1.20401 1.20805 1.20928 0.97055 0.97456 0.87971 1.19597 0.92273 0.99896 0.97858 1.21112 1.00804 0.93456 0.92740 1.21493 0.93062 1.04679 1.00713 1.19187 0.92282 0.92721 0.88966 1.86135 1.41843 1.58212 1.37430 1.23460 0.97854 0.91505 0.95171 1.17735 0.86636 1.00028 0.95506 1.86064 1.11409 1.56685 1.70900 1.23129 0.90506 0.95161 0.97265 1.21043 0.93771 0.96837 0.92495 1.98381 1.77032 1.59248 1.67859 0.94879 0.90833 0.91819 0.92676 0.90572 0.99769 0.98897 0.92926 0.93012 0.91873 0.82507 0.80903 0.91128 0.86250 0.91170 0.92947 0.94364 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 9.25 71.98 0.67 -5.21 16 2 C 0.06 2.32 5.63 86.30 0.49 2.80 16 3 N -0.53 -22.42 4.69 -905.38 -4.25 -26.66 16 4 C 0.21 10.93 4.49 85.56 0.38 11.32 16 5 C -0.51 -28.91 8.41 25.60 0.22 -28.69 16 6 H 0.06 3.23 7.33 -2.91 -0.02 3.21 16 7 C 0.00 0.21 5.46 84.66 0.46 0.68 16 8 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.09 3.35 4.31 85.56 0.37 3.72 16 14 C -0.09 -2.88 4.58 -19.84 -0.09 -2.97 16 15 C -0.06 -1.43 8.63 22.27 0.19 -1.24 16 16 C -0.18 -3.53 9.04 22.35 0.20 -3.33 16 17 C 0.12 2.82 6.70 22.56 0.15 2.97 16 18 O -0.32 -6.91 10.28 -79.57 -0.82 -7.72 16 19 C 0.01 0.15 9.81 113.37 1.11 1.26 16 20 C 0.05 1.39 5.73 22.58 0.13 1.52 16 21 O -0.33 -10.01 9.66 -79.97 -0.77 -10.78 16 22 C 0.03 0.79 11.13 113.37 1.26 2.06 16 23 C -0.01 -0.44 6.32 22.40 0.14 -0.30 16 24 Cl -0.05 -1.96 27.05 -2.72 -0.07 -2.04 16 25 H 0.03 1.34 6.32 -2.38 -0.02 1.32 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.82 6.01 -2.39 -0.01 1.81 16 28 H 0.05 2.30 6.97 -2.39 -0.02 2.28 16 29 H 0.08 2.42 6.46 -2.39 -0.02 2.40 16 30 H -0.02 -0.85 6.01 -2.39 -0.01 -0.87 16 31 H -0.01 -0.41 7.92 -2.39 -0.02 -0.43 16 32 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.05 1.71 5.95 -2.39 -0.01 1.70 16 34 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 35 H 0.16 2.84 7.72 -2.91 -0.02 2.82 16 36 H 0.17 1.99 6.30 -2.91 -0.02 1.97 16 37 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.49 353.80 3.11 -66.38 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.03 Total: 5.31 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.68 Total: -15.43 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.96 Total: -82.66 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -1.59 Total: -18.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.04 kcal Total: -69.49 3.11 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127679166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.133 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds