Wall clock time and date at job start Tue Mar 31 2020 10:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99787 * 2 1 4 4 O 1.42902 * 109.46826 * 135.00619 * 3 2 1 5 5 C 1.35711 * 117.00102 * 180.02562 * 4 3 2 6 6 C 1.38999 * 119.90975 * 0.24937 * 5 4 3 7 7 C 1.37701 * 120.09020 * 180.21239 * 6 5 4 8 8 C 1.39745 * 119.90657 * 359.51090 * 7 6 5 9 9 C 1.47585 * 120.08443 * 180.27465 * 8 7 6 10 10 O 1.21607 * 120.00603 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.40543 * 120.00053 * 180.02562 * 11 9 8 13 13 C 1.40657 * 126.08164 * 359.68450 * 12 11 9 14 14 N 1.30912 * 108.38469 * 179.85370 * 13 12 11 15 15 N 1.40063 * 108.40974 * 0.40717 * 14 13 12 16 16 C 1.37316 * 126.06731 * 179.71425 * 15 14 13 17 17 H 1.08004 * 119.99913 * 180.02562 * 16 15 14 18 18 C 1.38988 * 119.99998 * 0.03118 * 16 15 14 19 19 N 1.31296 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47040 * 119.99839 * 20 18 16 23 23 H 1.48501 * 109.47189 * 240.00008 * 20 18 16 24 24 C 1.35696 * 126.08474 * 179.97438 * 12 11 9 25 25 C 1.39733 * 119.82324 * 0.26119 * 8 7 6 26 26 C 1.37700 * 119.91425 * 359.97438 * 25 8 7 27 27 H 1.08001 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99828 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99839 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46847 * 15.00734 * 3 2 1 31 31 H 1.08998 * 109.47165 * 255.00477 * 3 2 1 32 32 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04909 * 179.79641 * 7 6 5 34 34 H 0.97004 * 120.00085 * 359.97438 * 11 9 8 35 35 H 1.08002 * 125.81056 * 359.97438 * 13 12 11 36 36 H 0.97006 * 119.99689 * 180.02562 * 19 18 16 37 37 H 1.07998 * 126.24525 * 359.95751 * 24 12 11 38 38 H 1.08003 * 120.04301 * 180.02562 * 25 8 7 39 39 H 1.07999 * 119.95887 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9080 2.3437 1.0788 6 6 3.6511 3.4678 0.3026 7 6 4.4441 4.5869 0.4244 8 6 5.5022 4.5950 1.3373 9 6 6.3509 5.7945 1.4755 10 8 6.1297 6.7777 0.7948 11 7 7.3711 5.8003 2.3561 12 6 8.1791 6.9427 2.4881 13 6 8.0428 8.1417 1.7654 14 7 8.9722 8.9725 2.1650 15 7 9.7413 8.3365 3.1477 16 6 10.8163 8.8777 3.8088 17 1 11.3415 8.2964 4.5523 18 6 11.2286 10.1735 3.5212 19 7 10.5904 10.8799 2.6170 20 14 12.6905 10.9100 4.4211 21 1 13.2307 9.9168 5.3839 22 1 13.7444 11.2726 3.4397 23 1 12.2583 12.1262 5.1555 24 6 9.2328 7.0832 3.3314 25 6 5.7541 3.4647 2.1191 26 6 4.9595 2.3478 1.9878 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4754 1.4869 -0.9927 32 1 2.8307 3.4622 -0.3999 33 1 4.2459 5.4588 -0.1814 34 1 7.5474 5.0162 2.8994 35 1 7.2969 8.3434 1.0108 36 1 10.8783 11.7842 2.4160 37 1 9.6016 6.3393 4.0220 38 1 6.5706 3.4672 2.8261 39 1 5.1533 1.4739 2.5920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139446908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:10 Heat of formation + Delta-G solvation = 64.439174 kcal Electronic energy + Delta-G solvation = -23686.606950 eV Core-core repulsion = 19983.564135 eV Total energy + Delta-G solvation = -3703.042814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56878 -39.81811 -38.76137 -37.16021 -34.50197 -34.26118 -33.17807 -31.22966 -30.58037 -30.02669 -27.66995 -27.03267 -24.95867 -23.32111 -22.82969 -21.01660 -20.43176 -20.32998 -19.37473 -18.54016 -17.69929 -16.99892 -16.60330 -16.15353 -15.46583 -15.27702 -15.08450 -14.61280 -14.49445 -14.30355 -13.77976 -13.74105 -13.56975 -13.19102 -12.99510 -12.93488 -12.68676 -12.39926 -11.66508 -11.63971 -11.44181 -11.40097 -11.25274 -11.01370 -10.92023 -10.49881 -10.14951 -10.00679 -9.24504 -9.22949 -9.15625 -8.78953 -8.41300 -8.03454 -6.66787 -6.54393 -4.20888 0.87298 1.18508 1.56548 2.89147 2.96614 3.05000 3.06138 3.12152 3.59350 3.60959 3.89698 3.95679 4.30911 4.50183 4.51934 4.59085 4.66074 4.74926 4.80592 4.93838 5.03767 5.07755 5.16812 5.21102 5.34722 5.40486 5.82148 6.00501 6.00926 6.06949 6.13699 6.23695 6.30030 6.44086 6.52442 6.93107 6.98676 7.09122 7.15252 7.26108 7.87856 8.20592 8.30192 8.65337 8.88187 9.39691 9.69019 10.41694 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.059187 B = 0.002024 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.960732 B =13832.223414 C =14259.392201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 C 0.084 3.916 4 O -0.310 6.310 5 C 0.145 3.855 6 C -0.218 4.218 7 C -0.021 4.021 8 C -0.156 4.156 9 C 0.543 3.457 10 O -0.536 6.536 11 N -0.618 5.618 12 C -0.060 4.060 13 C -0.031 4.031 14 N -0.261 5.261 15 N -0.143 5.143 16 C -0.323 4.323 17 H 0.117 0.883 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.935 3.065 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.083 4.083 25 C -0.050 4.050 26 C -0.158 4.158 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.395 0.605 35 H 0.177 0.823 36 H 0.274 0.726 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.228 -19.472 -2.312 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.010 3.990 4 O -0.224 6.224 5 C 0.099 3.901 6 C -0.236 4.236 7 C -0.040 4.040 8 C -0.159 4.159 9 C 0.330 3.670 10 O -0.415 6.415 11 N -0.260 5.260 12 C -0.165 4.165 13 C -0.207 4.207 14 N -0.092 5.092 15 N 0.090 4.910 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.396 5.396 20 Si 0.759 3.241 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.234 4.234 25 C -0.069 4.069 26 C -0.176 4.176 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.859 -17.548 -2.941 22.553 hybrid contribution 0.275 -0.913 0.656 1.158 sum -13.583 -18.461 -2.285 23.033 Atomic orbital electron populations 1.23908 0.95433 1.02670 0.98770 1.22666 0.95663 0.97760 1.01365 1.21879 0.87880 0.96959 0.92319 1.86037 1.42046 1.35784 1.58487 1.19206 0.90758 0.85680 0.94465 1.21198 1.04007 0.94139 1.04295 1.21074 0.91135 0.97355 0.94427 1.19973 0.99597 0.95042 1.01292 1.17932 0.80819 0.87291 0.80954 1.90665 1.70665 1.34787 1.45400 1.42415 1.29286 1.15226 1.39075 1.17270 1.00419 0.90206 1.08638 1.24131 1.01654 0.91274 1.03625 1.78254 1.06053 1.18943 1.05912 1.44552 1.18001 1.06418 1.22057 1.19924 1.05920 0.98977 1.20688 0.86559 1.25647 0.98937 0.96275 0.96274 1.70233 1.35256 1.09318 1.24823 0.85764 0.79824 0.79355 0.79198 1.18692 1.19920 1.19927 1.21255 1.01781 0.91990 1.08420 1.21155 0.97637 0.91374 0.96769 1.20309 0.96100 1.00086 1.01148 0.88150 0.87391 0.86200 0.91196 0.90735 0.85042 0.84182 0.77043 0.80664 0.91522 0.83671 0.84805 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 14.31 29.02 0.42 -0.42 16 2 C -0.16 -0.96 9.89 -36.02 -0.36 -1.32 16 3 C 0.08 0.60 5.15 36.01 0.19 0.79 16 4 O -0.31 -3.08 10.11 -18.84 -0.19 -3.27 16 5 C 0.14 1.56 6.70 -39.02 -0.26 1.30 16 6 C -0.22 -2.31 9.01 -39.50 -0.36 -2.66 16 7 C -0.02 -0.27 9.59 -39.21 -0.38 -0.65 16 8 C -0.16 -2.21 5.87 -104.96 -0.62 -2.83 16 9 C 0.54 10.04 7.73 -12.45 -0.10 9.94 16 10 O -0.54 -11.89 13.48 5.27 0.07 -11.82 16 11 N -0.62 -11.36 5.41 -10.92 -0.06 -11.42 16 12 C -0.06 -1.40 6.90 -83.86 -0.58 -1.98 16 13 C -0.03 -0.84 10.85 -17.03 -0.18 -1.02 16 14 N -0.26 -7.68 10.39 30.80 0.32 -7.36 16 15 N -0.14 -3.96 3.74 -11.41 -0.04 -4.00 16 16 C -0.32 -8.61 10.25 -14.82 -0.15 -8.76 16 17 H 0.12 2.77 7.83 -52.48 -0.41 2.36 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.69 11.81 55.50 0.66 -21.04 16 20 Si 0.93 19.03 29.55 -169.99 -5.02 14.01 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.08 -1.98 11.49 -16.39 -0.19 -2.17 16 25 C -0.05 -0.57 9.53 -39.22 -0.37 -0.95 16 26 C -0.16 -1.65 9.97 -39.50 -0.39 -2.04 16 27 H 0.10 0.42 7.90 -52.49 -0.41 0.00 16 28 H 0.11 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.07 0.44 7.36 -51.93 -0.38 0.06 16 31 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.06 6.28 -52.48 -0.33 0.73 16 33 H 0.14 1.83 7.64 -52.49 -0.40 1.43 16 34 H 0.40 5.58 6.85 -40.82 -0.28 5.30 16 35 H 0.18 4.67 5.91 -52.49 -0.31 4.36 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 38 H 0.13 1.21 6.39 -52.48 -0.34 0.87 16 39 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -34.48 342.93 -6.62 -41.09 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.09 Total: 10.32 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.43 Total: -11.69 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.87 Total: -43.81 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.12 Total: -15.09 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.48 -6.62 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139446908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.534 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds