Wall clock time and date at job start Tue Mar 31 2020 10:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99787 * 2 1 4 4 O 1.42902 * 109.46826 * 135.00619 * 3 2 1 5 5 C 1.35711 * 117.00102 * 180.02562 * 4 3 2 6 6 C 1.38999 * 119.90975 * 0.24937 * 5 4 3 7 7 C 1.37701 * 120.09020 * 180.21239 * 6 5 4 8 8 C 1.39745 * 119.90657 * 359.51090 * 7 6 5 9 9 C 1.47585 * 120.08443 * 180.27465 * 8 7 6 10 10 O 1.21607 * 120.00603 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99758 * 180.02562 * 9 8 7 12 12 C 1.40543 * 120.00053 * 180.02562 * 11 9 8 13 13 C 1.40657 * 126.08164 * 359.68450 * 12 11 9 14 14 N 1.30912 * 108.38469 * 179.85370 * 13 12 11 15 15 N 1.40063 * 108.40974 * 0.40717 * 14 13 12 16 16 C 1.37316 * 126.06731 * 179.71425 * 15 14 13 17 17 H 1.08004 * 119.99913 * 180.02562 * 16 15 14 18 18 C 1.38988 * 119.99998 * 0.03118 * 16 15 14 19 19 N 1.31296 * 119.99840 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47236 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47040 * 119.99839 * 20 18 16 23 23 H 1.48501 * 109.47189 * 240.00008 * 20 18 16 24 24 C 1.35696 * 126.08474 * 179.97438 * 12 11 9 25 25 C 1.39733 * 119.82324 * 0.26119 * 8 7 6 26 26 C 1.37700 * 119.91425 * 359.97438 * 25 8 7 27 27 H 1.08001 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99828 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99839 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46847 * 15.00734 * 3 2 1 31 31 H 1.08998 * 109.47165 * 255.00477 * 3 2 1 32 32 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04909 * 179.79641 * 7 6 5 34 34 H 0.97004 * 120.00085 * 359.97438 * 11 9 8 35 35 H 1.08002 * 125.81056 * 359.97438 * 13 12 11 36 36 H 0.97006 * 119.99689 * 180.02562 * 19 18 16 37 37 H 1.07998 * 126.24525 * 359.95751 * 24 12 11 38 38 H 1.08003 * 120.04301 * 180.02562 * 25 8 7 39 39 H 1.07999 * 119.95887 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9080 2.3437 1.0788 6 6 3.6511 3.4678 0.3026 7 6 4.4441 4.5869 0.4244 8 6 5.5022 4.5950 1.3373 9 6 6.3509 5.7945 1.4755 10 8 6.1297 6.7777 0.7948 11 7 7.3711 5.8003 2.3561 12 6 8.1791 6.9427 2.4881 13 6 8.0428 8.1417 1.7654 14 7 8.9722 8.9725 2.1650 15 7 9.7413 8.3365 3.1477 16 6 10.8163 8.8777 3.8088 17 1 11.3415 8.2964 4.5523 18 6 11.2286 10.1735 3.5212 19 7 10.5904 10.8799 2.6170 20 14 12.6905 10.9100 4.4211 21 1 13.2307 9.9168 5.3839 22 1 13.7444 11.2726 3.4397 23 1 12.2583 12.1262 5.1555 24 6 9.2328 7.0832 3.3314 25 6 5.7541 3.4647 2.1191 26 6 4.9595 2.3478 1.9878 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4754 1.4869 -0.9927 32 1 2.8307 3.4622 -0.3999 33 1 4.2459 5.4588 -0.1814 34 1 7.5474 5.0162 2.8994 35 1 7.2969 8.3434 1.0108 36 1 10.8783 11.7842 2.4160 37 1 9.6016 6.3393 4.0220 38 1 6.5706 3.4672 2.8261 39 1 5.1533 1.4739 2.5920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139446908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:09 Heat of formation + Delta-G solvation = 42.017711 kcal Electronic energy + Delta-G solvation = -23687.579217 eV Core-core repulsion = 19983.564135 eV Total energy + Delta-G solvation = -3704.015082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83126 -41.23609 -40.20451 -38.18172 -35.98138 -35.07173 -34.93136 -32.33209 -32.10893 -31.38381 -29.40779 -27.68284 -26.81795 -24.54180 -23.66567 -22.85229 -21.82487 -21.20248 -20.82962 -19.39508 -19.35133 -18.41095 -17.45356 -17.34540 -17.01155 -16.54722 -16.22870 -16.10968 -15.68147 -15.35590 -15.15526 -15.07749 -14.82211 -14.51826 -14.29640 -13.82421 -13.54401 -13.47201 -13.32970 -13.29535 -12.92964 -12.83805 -12.21188 -12.15171 -12.01860 -11.86201 -11.76409 -11.03022 -10.86388 -10.75678 -10.43706 -10.11403 -10.09824 -9.33775 -8.50760 -8.46509 -6.23630 -0.13780 0.31328 1.13371 1.26642 1.40786 1.60074 1.63815 1.90983 2.04584 2.29222 2.31429 2.46054 2.90933 2.92465 3.10250 3.69695 3.80289 3.83204 3.97127 4.08982 4.16630 4.30563 4.37444 4.45097 4.51002 4.55752 4.63447 4.96525 4.97223 5.00712 5.06424 5.13850 5.22887 5.29013 5.39222 5.45854 5.56174 5.63009 5.71148 5.96657 6.31090 6.32890 6.72991 6.74753 7.36769 7.47373 7.68236 8.53259 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.059187 B = 0.002024 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.960732 B =13832.223414 C =14259.392201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.076 3.924 4 O -0.316 6.316 5 C 0.151 3.849 6 C -0.214 4.214 7 C -0.031 4.031 8 C -0.180 4.180 9 C 0.542 3.458 10 O -0.581 6.581 11 N -0.610 5.610 12 C -0.046 4.046 13 C -0.060 4.060 14 N -0.310 5.310 15 N -0.168 5.168 16 C -0.353 4.353 17 H 0.143 0.857 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.020 2.980 21 H -0.239 1.239 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.078 4.078 25 C -0.040 4.040 26 C -0.158 4.158 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.418 0.582 35 H 0.166 0.834 36 H 0.276 0.724 37 H 0.191 0.809 38 H 0.158 0.842 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.421 -22.545 -0.742 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C 0.002 3.998 4 O -0.229 6.229 5 C 0.104 3.896 6 C -0.232 4.232 7 C -0.050 4.050 8 C -0.184 4.184 9 C 0.333 3.667 10 O -0.463 6.463 11 N -0.255 5.255 12 C -0.153 4.153 13 C -0.235 4.235 14 N -0.142 5.142 15 N 0.063 4.937 16 C -0.484 4.484 17 H 0.160 0.840 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.162 1.162 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.229 4.229 25 C -0.058 4.058 26 C -0.176 4.176 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.174 0.826 33 H 0.147 0.853 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.176 0.824 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.080 -20.701 -1.356 25.072 hybrid contribution 0.086 -0.191 0.090 0.228 sum -13.994 -20.892 -1.267 25.177 Atomic orbital electron populations 1.24129 0.95117 1.03717 0.96763 1.22680 0.96103 0.97362 1.03203 1.22133 0.87459 0.97995 0.92192 1.86049 1.42464 1.35266 1.59150 1.19407 0.90594 0.85748 0.93803 1.21356 1.04085 0.93195 1.04593 1.21095 0.91522 0.97977 0.94391 1.19682 1.00287 0.94410 1.04019 1.18681 0.80472 0.88015 0.79573 1.90642 1.71745 1.36910 1.46971 1.42316 1.28785 1.14590 1.39805 1.17352 1.00352 0.90619 1.06938 1.24162 1.01744 0.93008 1.04554 1.78149 1.07495 1.20895 1.07708 1.44853 1.18703 1.07689 1.22408 1.20693 1.06225 1.00045 1.21484 0.83976 1.26910 1.01957 0.96381 0.96683 1.70416 1.37792 1.09909 1.27258 0.84519 0.75192 0.78473 0.77893 1.16191 1.19816 1.19829 1.22004 1.01000 0.91540 1.08315 1.21341 0.98092 0.90305 0.96074 1.20601 0.95496 1.00443 1.01076 0.87427 0.86075 0.86145 0.90241 0.89851 0.82637 0.85346 0.74333 0.81687 0.91418 0.79210 0.82422 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 14.31 67.78 0.97 -0.19 16 2 C -0.18 -1.76 9.89 25.65 0.25 -1.51 16 3 C 0.08 0.90 5.15 71.24 0.37 1.26 16 4 O -0.32 -5.39 10.11 -90.32 -0.91 -6.31 16 5 C 0.15 2.84 6.70 22.63 0.15 2.99 16 6 C -0.21 -4.13 9.01 22.33 0.20 -3.93 16 7 C -0.03 -0.78 9.59 22.51 0.22 -0.57 16 8 C -0.18 -5.00 5.87 -20.09 -0.12 -5.12 16 9 C 0.54 20.28 7.73 86.71 0.67 20.95 16 10 O -0.58 -27.00 13.48 -4.05 -0.05 -27.06 16 11 N -0.61 -21.98 5.41 -306.72 -1.66 -23.64 16 12 C -0.05 -2.20 6.90 37.74 0.26 -1.94 16 13 C -0.06 -3.35 10.85 85.42 0.93 -2.43 16 14 N -0.31 -19.16 10.39 -56.46 -0.59 -19.75 16 15 N -0.17 -9.44 3.74 -190.00 -0.71 -10.15 16 16 C -0.35 -18.87 10.25 84.01 0.86 -18.01 16 17 H 0.14 6.54 7.83 -2.91 -0.02 6.51 16 18 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 19 N -0.83 -48.38 11.81 21.66 0.26 -48.12 16 20 Si 1.02 38.89 29.55 68.60 2.03 40.92 16 21 H -0.24 -8.10 7.11 99.48 0.71 -7.39 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 24 C -0.08 -3.66 11.49 83.38 0.96 -2.70 16 25 C -0.04 -0.79 9.53 22.50 0.21 -0.58 16 26 C -0.16 -2.79 9.97 22.32 0.22 -2.57 16 27 H 0.11 0.61 7.90 -2.91 -0.02 0.59 16 28 H 0.12 0.55 8.06 -2.91 -0.02 0.53 16 29 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.08 0.78 7.36 -2.39 -0.02 0.76 16 31 H 0.08 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.16 2.14 6.28 -2.91 -0.02 2.13 16 33 H 0.13 3.50 7.64 -2.91 -0.02 3.48 16 34 H 0.42 10.84 6.85 -92.71 -0.63 10.20 16 35 H 0.17 9.45 5.91 -2.91 -0.02 9.44 16 36 H 0.28 14.82 8.31 -92.70 -0.77 14.05 16 37 H 0.19 6.88 8.06 -2.91 -0.02 6.86 16 38 H 0.16 2.28 6.39 -2.91 -0.02 2.27 16 39 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -79.54 342.93 5.44 -74.09 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.46 Total: 34.29 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 6.62 Total: -14.29 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -2.70 Total: -101.66 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.97 Total: -33.37 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -79.54 5.44 -74.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139446908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.110 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds