Wall clock time and date at job start Tue Mar 31 2020 10:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 O 1.42898 * 109.47765 * 239.99402 * 2 1 3 5 5 C 1.42897 * 114.00087 * 89.99815 * 4 2 1 6 6 C 1.52999 * 109.47585 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46844 * 55.00016 * 6 5 4 8 8 O 1.42900 * 109.46732 * 295.00609 * 6 5 4 9 9 C 1.52993 * 109.47310 * 175.00112 * 6 5 4 10 10 N 1.46507 * 109.46989 * 184.99979 * 9 6 5 11 11 C 1.46498 * 119.99758 * 90.00112 * 10 9 6 12 12 C 1.36941 * 120.00005 * 270.00006 * 10 9 6 13 13 H 1.08003 * 119.99829 * 22.92942 * 12 10 9 14 14 C 1.38806 * 119.99755 * 202.92986 * 12 10 9 15 15 N 1.31612 * 120.00236 * 13.12418 * 14 12 10 16 16 Si 1.86801 * 119.99576 * 193.12147 * 14 12 10 17 17 H 1.48493 * 109.47662 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.47121 * 120.00289 * 16 14 12 19 19 H 1.48500 * 109.47145 * 239.99693 * 16 14 12 20 20 C 1.50707 * 109.46878 * 119.99526 * 2 1 3 21 21 C 1.38240 * 119.98406 * 265.00246 * 20 2 1 22 22 C 1.38217 * 120.01263 * 179.97438 * 21 20 2 23 23 C 1.38355 * 119.98437 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 120.01149 * 180.02562 * 23 22 21 25 25 C 1.38350 * 119.97543 * 0.28122 * 23 22 21 26 26 C 1.38221 * 119.98132 * 359.39600 * 25 23 22 27 27 H 1.09000 * 109.46944 * 60.00826 * 1 2 3 28 28 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47335 * 300.00596 * 1 2 3 30 30 H 1.09003 * 109.47575 * 300.00423 * 5 4 2 31 31 H 1.09001 * 109.46789 * 60.00183 * 5 4 2 32 32 H 0.96702 * 114.00368 * 299.99159 * 8 6 5 33 33 H 1.09002 * 109.47523 * 304.99970 * 9 6 5 34 34 H 1.09004 * 109.47393 * 65.00497 * 9 6 5 35 35 H 1.09002 * 109.47285 * 95.12675 * 11 10 9 36 36 H 1.09006 * 109.47043 * 215.12250 * 11 10 9 37 37 H 1.08996 * 109.47534 * 335.12362 * 11 10 9 38 38 H 0.97005 * 119.99914 * 180.02562 * 15 14 12 39 39 H 1.07998 * 119.99445 * 359.97438 * 21 20 2 40 40 H 1.07995 * 120.00674 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.01231 * 179.72726 * 25 23 22 42 42 H 1.08007 * 119.98875 * 180.32351 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1666 5 6 2.2002 0.1827 -2.2940 6 6 2.7082 -0.6410 -3.4790 7 1 2.0195 -1.4637 -3.6715 8 8 4.0026 -1.1647 -3.1751 9 6 2.7970 0.2505 -4.7192 10 7 3.1683 -0.5629 -5.8798 11 6 2.1271 -1.1841 -6.7021 12 6 4.4886 -0.7424 -6.1959 13 1 5.2468 -0.6230 -5.4361 14 6 4.8523 -1.0780 -7.4927 15 7 3.9768 -0.9728 -8.4698 16 14 6.5843 -1.6787 -7.8511 17 1 7.3690 -1.7077 -6.5908 18 1 6.5247 -3.0459 -8.4281 19 1 7.2361 -0.7609 -8.8197 20 6 2.0323 -0.7103 1.2306 21 6 2.3609 0.0145 2.3609 22 6 2.8211 -0.6364 3.4901 23 6 2.9534 -2.0137 3.4886 24 17 3.5307 -2.8320 4.9066 25 6 2.6304 -2.7379 2.3549 26 6 2.1639 -2.0864 1.2287 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.2540 0.6544 -2.5589 31 1 2.9321 0.9511 -2.0449 32 1 4.6681 -0.4873 -2.9924 33 1 1.8299 0.7201 -4.8991 34 1 3.5511 1.0212 -4.5595 35 1 1.9048 -0.5411 -7.5537 36 1 2.4764 -2.1528 -7.0598 37 1 1.2257 -1.3208 -6.1049 38 1 4.2309 -1.2077 -9.3761 39 1 2.2580 1.0895 2.3618 40 1 3.0774 -0.0702 4.3732 41 1 2.7376 -3.8125 2.3517 42 1 1.9068 -2.6522 0.3453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264291735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:35 Heat of formation + Delta-G solvation = -58.652098 kcal Electronic energy + Delta-G solvation = -23392.815437 eV Core-core repulsion = 19785.542479 eV Total energy + Delta-G solvation = -3607.272958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92032 -38.33788 -36.97433 -36.45802 -34.65848 -32.74358 -31.37878 -31.28680 -29.44997 -29.10634 -26.00238 -25.37959 -23.86859 -23.07406 -21.82882 -21.13658 -20.39890 -17.51605 -17.09233 -16.61290 -16.18499 -15.83860 -15.46773 -14.94952 -14.79660 -14.50323 -14.24253 -13.75468 -13.72593 -13.53966 -13.33395 -12.93956 -12.88748 -12.73337 -12.14652 -12.01187 -11.83678 -11.71090 -11.49308 -11.10849 -11.09090 -10.95892 -10.81823 -10.62243 -10.39696 -10.28623 -9.90215 -9.89269 -9.64978 -9.41136 -9.27941 -8.82665 -8.47262 -6.68502 -5.66618 -3.12425 0.85014 1.05563 1.86951 3.31601 3.42384 3.49952 3.52855 3.59045 4.46389 4.53791 4.57035 4.63800 4.85364 4.96371 5.00254 5.11777 5.19973 5.26522 5.36865 5.41139 5.42767 5.49729 5.54269 5.64588 5.71991 5.84625 5.91851 5.93702 5.97905 6.04099 6.08067 6.28098 6.44977 6.54218 6.71741 6.79587 7.24284 7.39728 7.74168 7.89496 8.33239 8.45994 9.28411 9.90759 10.39040 11.38652 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002530 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.537613 B =11064.315591 C =12031.383936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 H 0.069 0.931 4 O -0.366 6.366 5 C 0.031 3.969 6 C 0.088 3.912 7 H 0.094 0.906 8 O -0.540 6.540 9 C 0.126 3.874 10 N -0.593 5.593 11 C 0.161 3.839 12 C -0.240 4.240 13 H 0.070 0.930 14 C -0.004 4.004 15 N -0.912 5.912 16 Si 0.904 3.096 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.292 1.292 20 C -0.077 4.077 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.036 4.036 24 Cl -0.077 7.077 25 C -0.112 4.112 26 C -0.075 4.075 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.362 0.638 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.032 0.968 36 H 0.042 0.958 37 H -0.004 1.004 38 H 0.250 0.750 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 2.976 23.958 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 H 0.086 0.914 4 O -0.285 6.285 5 C -0.046 4.046 6 C 0.025 3.975 7 H 0.112 0.888 8 O -0.343 6.343 9 C -0.002 4.002 10 N -0.315 5.315 11 C 0.016 3.984 12 C -0.370 4.370 13 H 0.088 0.912 14 C -0.201 4.201 15 N -0.558 5.558 16 Si 0.735 3.265 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.220 1.220 20 C -0.077 4.077 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.062 4.062 24 Cl -0.048 7.048 25 C -0.131 4.131 26 C -0.093 4.093 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.207 0.793 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.132 2.086 23.768 24.902 hybrid contribution 1.120 0.384 -0.043 1.185 sum -6.012 2.470 23.725 24.599 Atomic orbital electron populations 1.22268 0.94885 1.03236 1.02276 1.20836 0.93644 0.94970 0.84148 0.91353 1.88044 1.86248 1.34894 1.19345 1.23522 0.99712 0.93898 0.87490 1.22940 0.85316 0.97942 0.91261 0.88794 1.86647 1.19156 1.36446 1.92027 1.21286 0.98692 0.92435 0.87824 1.43765 1.03681 1.55954 1.28050 1.20826 0.87346 0.97737 0.92466 1.19226 0.83138 1.41849 0.92748 0.91186 1.25017 0.97665 1.01939 0.95501 1.70079 1.33876 1.52420 0.99399 0.86175 0.84321 0.78191 0.77818 1.20248 1.21734 1.21959 1.19913 0.98900 0.94275 0.94619 1.20909 0.98918 1.00022 0.92163 1.20956 1.00747 0.92285 0.99240 1.20967 1.03149 0.92970 0.89152 1.98368 1.87461 1.79312 1.39627 1.21126 0.99614 1.00616 0.91700 1.21059 0.96652 0.94045 0.97565 0.91776 0.91512 0.91688 0.92863 0.93364 0.79292 0.93770 0.93044 0.94951 0.93967 0.98505 0.93948 0.85132 0.84966 0.84850 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.51 37.16 0.35 -1.16 16 2 C 0.12 1.27 2.93 -27.88 -0.08 1.19 16 3 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 4 O -0.37 -5.01 9.10 -40.09 -0.36 -5.38 16 5 C 0.03 0.42 5.38 37.16 0.20 0.62 16 6 C 0.09 1.54 3.49 -26.74 -0.09 1.44 16 7 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 8 O -0.54 -10.45 12.54 -40.09 -0.50 -10.95 16 9 C 0.13 2.46 5.32 -4.04 -0.02 2.44 16 10 N -0.59 -14.87 2.90 -181.12 -0.53 -15.39 16 11 C 0.16 4.00 8.98 59.85 0.54 4.54 16 12 C -0.24 -6.61 9.21 -15.06 -0.14 -6.75 16 13 H 0.07 1.89 7.58 -52.48 -0.40 1.49 16 14 C 0.00 -0.11 5.10 -17.44 -0.09 -0.20 16 15 N -0.91 -26.96 10.71 55.49 0.59 -26.36 16 16 Si 0.90 22.35 29.57 -169.99 -5.03 17.32 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C -0.08 -0.80 5.00 -104.62 -0.52 -1.33 16 21 C -0.10 -0.90 9.68 -39.59 -0.38 -1.29 16 22 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 23 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 24 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.21 16 25 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 26 C -0.08 -0.83 9.35 -39.59 -0.37 -1.20 16 27 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.36 5.86 9.05 45.56 0.41 6.27 16 33 H 0.04 0.78 8.07 -51.93 -0.42 0.37 16 34 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 36 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 37 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.14 1.63 7.63 -52.48 -0.40 1.23 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -31.92 366.55 -9.15 -41.07 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.71 Total: 1.62 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.64 Total: -5.24 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.07 Total: -41.75 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.87 Total: -16.33 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.92 -9.15 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264291735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.581 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds