Wall clock time and date at job start Tue Mar 31 2020 10:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 O 1.42898 * 109.47765 * 239.99402 * 2 1 3 5 5 C 1.42897 * 114.00087 * 89.99815 * 4 2 1 6 6 C 1.52999 * 109.47585 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46844 * 55.00016 * 6 5 4 8 8 O 1.42900 * 109.46732 * 295.00609 * 6 5 4 9 9 C 1.52993 * 109.47310 * 175.00112 * 6 5 4 10 10 N 1.46507 * 109.46989 * 184.99979 * 9 6 5 11 11 C 1.46498 * 119.99758 * 90.00112 * 10 9 6 12 12 C 1.36941 * 120.00005 * 270.00006 * 10 9 6 13 13 H 1.08003 * 119.99829 * 22.92942 * 12 10 9 14 14 C 1.38806 * 119.99755 * 202.92986 * 12 10 9 15 15 N 1.31612 * 120.00236 * 13.12418 * 14 12 10 16 16 Si 1.86801 * 119.99576 * 193.12147 * 14 12 10 17 17 H 1.48493 * 109.47662 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.47121 * 120.00289 * 16 14 12 19 19 H 1.48500 * 109.47145 * 239.99693 * 16 14 12 20 20 C 1.50707 * 109.46878 * 119.99526 * 2 1 3 21 21 C 1.38240 * 119.98406 * 265.00246 * 20 2 1 22 22 C 1.38217 * 120.01263 * 179.97438 * 21 20 2 23 23 C 1.38355 * 119.98437 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 120.01149 * 180.02562 * 23 22 21 25 25 C 1.38350 * 119.97543 * 0.28122 * 23 22 21 26 26 C 1.38221 * 119.98132 * 359.39600 * 25 23 22 27 27 H 1.09000 * 109.46944 * 60.00826 * 1 2 3 28 28 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47335 * 300.00596 * 1 2 3 30 30 H 1.09003 * 109.47575 * 300.00423 * 5 4 2 31 31 H 1.09001 * 109.46789 * 60.00183 * 5 4 2 32 32 H 0.96702 * 114.00368 * 299.99159 * 8 6 5 33 33 H 1.09002 * 109.47523 * 304.99970 * 9 6 5 34 34 H 1.09004 * 109.47393 * 65.00497 * 9 6 5 35 35 H 1.09002 * 109.47285 * 95.12675 * 11 10 9 36 36 H 1.09006 * 109.47043 * 215.12250 * 11 10 9 37 37 H 1.08996 * 109.47534 * 335.12362 * 11 10 9 38 38 H 0.97005 * 119.99914 * 180.02562 * 15 14 12 39 39 H 1.07998 * 119.99445 * 359.97438 * 21 20 2 40 40 H 1.07995 * 120.00674 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.01231 * 179.72726 * 25 23 22 42 42 H 1.08007 * 119.98875 * 180.32351 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0065 -0.6737 -1.1666 5 6 2.2002 0.1827 -2.2940 6 6 2.7082 -0.6410 -3.4790 7 1 2.0195 -1.4637 -3.6715 8 8 4.0026 -1.1647 -3.1751 9 6 2.7970 0.2505 -4.7192 10 7 3.1683 -0.5629 -5.8798 11 6 2.1271 -1.1841 -6.7021 12 6 4.4886 -0.7424 -6.1959 13 1 5.2468 -0.6230 -5.4361 14 6 4.8523 -1.0780 -7.4927 15 7 3.9768 -0.9728 -8.4698 16 14 6.5843 -1.6787 -7.8511 17 1 7.3690 -1.7077 -6.5908 18 1 6.5247 -3.0459 -8.4281 19 1 7.2361 -0.7609 -8.8197 20 6 2.0323 -0.7103 1.2306 21 6 2.3609 0.0145 2.3609 22 6 2.8211 -0.6364 3.4901 23 6 2.9534 -2.0137 3.4886 24 17 3.5307 -2.8320 4.9066 25 6 2.6304 -2.7379 2.3549 26 6 2.1639 -2.0864 1.2287 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.2540 0.6544 -2.5589 31 1 2.9321 0.9511 -2.0449 32 1 4.6681 -0.4873 -2.9924 33 1 1.8299 0.7201 -4.8991 34 1 3.5511 1.0212 -4.5595 35 1 1.9048 -0.5411 -7.5537 36 1 2.4764 -2.1528 -7.0598 37 1 1.2257 -1.3208 -6.1049 38 1 4.2309 -1.2077 -9.3761 39 1 2.2580 1.0895 2.3618 40 1 3.0774 -0.0702 4.3732 41 1 2.7376 -3.8125 2.3517 42 1 1.9068 -2.6522 0.3453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264291735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:35 Heat of formation + Delta-G solvation = -78.240502 kcal Electronic energy + Delta-G solvation = -23393.664854 eV Core-core repulsion = 19785.542479 eV Total energy + Delta-G solvation = -3608.122375 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69640 -39.44951 -38.18333 -37.35073 -36.43367 -33.63415 -33.24476 -32.04060 -30.82437 -29.96053 -27.95820 -26.95443 -24.68984 -23.92628 -23.31412 -22.24079 -21.69915 -18.84151 -18.27851 -17.89908 -17.19117 -17.09093 -16.69364 -16.46151 -15.76933 -15.61764 -15.47221 -15.15750 -14.85871 -14.67703 -14.42728 -14.35001 -13.84807 -13.75922 -13.61807 -13.09089 -12.86190 -12.79556 -12.74931 -12.53478 -12.49771 -12.24957 -12.20158 -11.98734 -11.87869 -11.81163 -11.76188 -11.58240 -10.95781 -10.56380 -10.51869 -10.00818 -9.57470 -8.70232 -7.78231 -5.25543 0.10272 0.32724 1.13674 1.45900 1.48811 1.58763 2.46311 2.56813 2.73268 3.36017 3.60041 3.75958 3.80477 3.85431 3.95180 4.10825 4.13617 4.28914 4.36265 4.42124 4.45550 4.51249 4.58137 4.62712 4.70224 4.82280 4.82927 4.89820 4.95133 5.00857 5.22142 5.25347 5.26915 5.31040 5.37755 5.51310 5.68030 5.74016 5.81290 6.32466 6.39451 7.03216 7.20177 7.90608 8.33579 9.25311 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.019846 B = 0.002530 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.537613 B =11064.315591 C =12031.383936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 H 0.089 0.911 4 O -0.391 6.391 5 C 0.043 3.957 6 C 0.098 3.902 7 H 0.071 0.929 8 O -0.565 6.565 9 C 0.124 3.876 10 N -0.613 5.613 11 C 0.174 3.826 12 C -0.238 4.238 13 H 0.074 0.926 14 C -0.063 4.063 15 N -0.944 5.944 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.297 1.297 19 H -0.292 1.292 20 C -0.087 4.087 21 C -0.097 4.097 22 C -0.113 4.113 23 C -0.046 4.046 24 Cl -0.074 7.074 25 C -0.122 4.122 26 C -0.093 4.093 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.374 0.626 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.030 0.970 38 H 0.245 0.755 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.137 0.863 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 4.645 26.201 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.106 0.894 4 O -0.310 6.310 5 C -0.034 4.034 6 C 0.036 3.964 7 H 0.089 0.911 8 O -0.371 6.371 9 C -0.003 4.003 10 N -0.336 5.336 11 C 0.029 3.971 12 C -0.369 4.369 13 H 0.092 0.908 14 C -0.257 4.257 15 N -0.592 5.592 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.225 1.225 19 H -0.219 1.219 20 C -0.087 4.087 21 C -0.115 4.115 22 C -0.131 4.131 23 C -0.073 4.073 24 Cl -0.045 7.045 25 C -0.140 4.140 26 C -0.111 4.111 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.221 0.779 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.178 0.822 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.129 3.776 26.066 27.285 hybrid contribution 1.073 -0.126 -0.610 1.241 sum -6.055 3.650 25.455 26.419 Atomic orbital electron populations 1.22248 0.93878 1.02774 1.03416 1.21033 0.94418 0.95557 0.82751 0.89353 1.88004 1.86742 1.35982 1.20299 1.23254 1.01051 0.92988 0.86151 1.22605 0.84472 0.97007 0.92339 0.91077 1.86602 1.20347 1.37942 1.92187 1.21503 0.99908 0.92323 0.86543 1.44022 1.02934 1.57019 1.29590 1.20562 0.88570 0.95533 0.92473 1.19539 0.84490 1.40242 0.92620 0.90825 1.25759 1.01097 1.03170 0.95701 1.70230 1.35492 1.54104 0.99385 0.85227 0.80612 0.77023 0.77764 1.19102 1.22472 1.21888 1.20059 0.99283 0.94013 0.95392 1.21207 0.97685 1.01375 0.91245 1.21268 0.99849 0.91931 1.00087 1.21116 1.03409 0.93642 0.89103 1.98367 1.87430 1.79409 1.39338 1.21206 0.99904 1.01042 0.91874 1.21029 0.97933 0.94758 0.97422 0.91347 0.92816 0.89788 0.90806 0.91473 0.77863 0.91635 0.92245 0.97262 0.97210 0.95105 0.94578 0.82240 0.82839 0.84477 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.51 71.98 0.68 -1.87 16 2 C 0.12 2.19 2.93 29.85 0.09 2.27 16 3 H 0.09 1.26 7.70 -2.39 -0.02 1.24 16 4 O -0.39 -9.97 9.10 -144.33 -1.31 -11.29 16 5 C 0.04 1.02 5.38 71.98 0.39 1.41 16 6 C 0.10 3.26 3.49 30.59 0.11 3.36 16 7 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 8 O -0.57 -21.33 12.54 -144.33 -1.81 -23.14 16 9 C 0.12 4.60 5.32 86.38 0.46 5.06 16 10 N -0.61 -30.53 2.90 -726.92 -2.11 -32.64 16 11 C 0.17 8.72 8.98 127.77 1.15 9.87 16 12 C -0.24 -13.10 9.21 84.03 0.77 -12.32 16 13 H 0.07 3.91 7.58 -2.91 -0.02 3.89 16 14 C -0.06 -3.63 5.10 84.86 0.43 -3.20 16 15 N -0.94 -56.98 10.71 21.65 0.23 -56.75 16 16 Si 0.96 46.40 29.57 68.60 2.03 48.43 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 C -0.09 -1.66 5.00 -19.86 -0.10 -1.76 16 21 C -0.10 -1.43 9.68 22.27 0.22 -1.21 16 22 C -0.11 -1.73 9.83 22.29 0.22 -1.51 16 23 C -0.05 -0.86 6.32 22.32 0.14 -0.71 16 24 Cl -0.07 -1.29 28.96 -2.72 -0.08 -1.37 16 25 C -0.12 -2.46 9.83 22.29 0.22 -2.24 16 26 C -0.09 -2.04 9.35 22.26 0.21 -1.83 16 27 H 0.07 0.99 7.87 -2.39 -0.02 0.97 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.47 7.87 -2.39 -0.02 1.45 16 31 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 32 H 0.37 11.58 9.05 -74.06 -0.67 10.91 16 33 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 34 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 35 H 0.01 0.50 7.34 -2.39 -0.02 0.48 16 36 H 0.01 0.51 7.34 -2.38 -0.02 0.49 16 37 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 38 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.12 3.03 7.63 -2.91 -0.02 3.00 16 Total: -1.00 -69.23 366.55 2.27 -66.96 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.34 Total: 14.48 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 4.98 Total: -4.68 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -1.88 Total: -89.39 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -3.12 Total: -34.43 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -69.23 2.27 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264291735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.279 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds