Wall clock time and date at job start Tue Mar 31 2020 10:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47052 * 2 1 4 4 C 1.46898 * 110.99956 * 68.69755 * 3 2 1 5 5 C 1.50699 * 109.47060 * 71.35808 * 4 3 2 6 6 H 1.07990 * 120.00065 * 5.07899 * 5 4 3 7 7 C 1.37882 * 119.99688 * 185.07767 * 5 4 3 8 8 N 1.31515 * 119.99422 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00377 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47281 * 89.99827 * 9 7 5 11 11 H 1.48503 * 109.47338 * 210.00146 * 9 7 5 12 12 H 1.48509 * 109.47010 * 330.00011 * 9 7 5 13 13 C 1.46904 * 110.99933 * 304.74788 * 3 2 1 14 14 C 1.53008 * 109.46931 * 287.05421 * 13 3 2 15 15 H 1.08999 * 109.46999 * 304.07053 * 14 13 3 16 16 O 1.42901 * 109.46881 * 64.06851 * 14 13 3 17 17 C 1.52996 * 109.47165 * 184.06954 * 14 13 3 18 18 O 1.42901 * 109.47107 * 174.99890 * 17 14 13 19 19 C 1.35926 * 117.00179 * 180.02562 * 18 17 14 20 20 C 1.38711 * 120.05721 * 359.97438 * 19 18 17 21 21 C 1.38147 * 119.95589 * 180.02562 * 20 19 18 22 22 C 1.38279 * 120.07962 * 0.02562 * 21 20 19 23 23 C 1.38250 * 120.11586 * 0.02562 * 22 21 20 24 24 C 1.38262 * 120.04072 * 359.68739 * 23 22 21 25 25 Cl 1.73600 * 120.03478 * 180.31543 * 24 23 22 26 26 H 1.09003 * 109.47227 * 65.19280 * 1 2 3 27 27 H 1.09003 * 109.46971 * 185.18786 * 1 2 3 28 28 H 1.09000 * 109.47351 * 305.18431 * 1 2 3 29 29 H 1.09003 * 109.47416 * 240.00294 * 2 1 3 30 30 H 1.08996 * 109.47175 * 119.99667 * 2 1 3 31 31 H 1.09001 * 109.47188 * 191.35905 * 4 3 2 32 32 H 1.09003 * 109.47199 * 311.35183 * 4 3 2 33 33 H 0.97006 * 119.99244 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47314 * 167.05724 * 13 3 2 35 35 H 1.09000 * 109.47328 * 47.05195 * 13 3 2 36 36 H 0.96701 * 114.00005 * 60.00750 * 16 14 13 37 37 H 1.08995 * 109.47389 * 294.99871 * 17 14 13 38 38 H 1.09006 * 109.47083 * 55.00295 * 17 14 13 39 39 H 1.08000 * 120.02208 * 0.02662 * 20 19 18 40 40 H 1.08002 * 119.96014 * 179.97438 * 21 20 19 41 41 H 1.07992 * 119.94113 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.97820 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7254 2.0474 1.2777 5 6 2.6102 1.4758 2.3554 6 1 3.3759 0.7579 2.1010 7 6 2.4422 1.8694 3.6661 8 7 3.2148 1.3709 4.6064 9 14 1.1174 3.1105 4.1062 10 1 -0.1461 2.3959 4.4192 11 1 1.5485 3.8958 5.2906 12 1 0.8966 4.0268 2.9585 13 6 1.4581 2.1419 -1.1269 14 6 2.1184 1.6834 -2.4287 15 1 3.1998 1.7914 -2.3453 16 8 1.7939 0.3128 -2.6704 17 6 1.6083 2.5405 -3.5888 18 8 2.3097 2.1910 -4.7838 19 6 1.9745 2.8648 -5.9157 20 6 0.9905 3.8416 -5.8770 21 6 0.6511 4.5248 -7.0288 22 6 1.2907 4.2356 -8.2201 23 6 2.2712 3.2618 -8.2624 24 6 2.6189 2.5792 -7.1114 25 17 3.8558 1.3622 -7.1631 26 1 -0.3634 0.4312 -0.9329 27 1 -0.3633 -1.0235 0.0929 28 1 -0.3634 0.5921 0.8399 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9120 3.1172 1.1838 32 1 0.6803 1.8827 1.5402 33 1 3.0963 1.6475 5.5286 34 1 1.6454 3.2055 -0.9795 35 1 0.3838 1.9665 -1.1831 36 1 0.8459 0.1423 -2.7559 37 1 0.5418 2.3646 -3.7290 38 1 1.7764 3.5937 -3.3638 39 1 0.4900 4.0680 -4.9471 40 1 -0.1154 5.2851 -6.9989 41 1 1.0234 4.7707 -9.1192 42 1 2.7691 3.0374 -9.1942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267192024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:07 Heat of formation + Delta-G solvation = -57.323180 kcal Electronic energy + Delta-G solvation = -23648.894419 eV Core-core repulsion = 20041.679087 eV Total energy + Delta-G solvation = -3607.215332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50987 -38.76486 -37.55981 -36.52111 -35.70988 -32.51977 -31.49486 -31.08921 -30.08183 -29.42511 -27.49315 -25.08585 -23.36124 -22.83972 -22.41088 -21.32322 -19.49737 -18.52327 -17.07040 -16.76170 -16.64280 -16.47108 -15.66892 -15.45948 -15.14917 -14.96110 -14.28265 -14.22199 -14.08908 -13.58966 -13.31810 -13.22782 -13.02511 -12.53131 -12.24664 -12.04031 -11.72672 -11.69456 -11.63585 -11.36079 -11.26193 -11.13552 -10.97685 -10.81713 -10.74594 -10.65564 -10.30944 -9.87889 -9.40911 -9.24536 -9.23236 -8.58183 -8.48130 -7.34845 -6.05667 -4.02305 0.78870 0.98569 1.99494 2.80024 3.24558 3.27951 3.32823 3.33340 4.32250 4.39623 4.39826 4.45571 4.57462 4.72236 4.85362 4.89067 5.03654 5.08805 5.16413 5.25655 5.30507 5.37257 5.41411 5.69798 5.73315 5.81642 5.83829 5.87086 6.03010 6.04159 6.18136 6.28515 6.37923 6.47311 6.85203 6.92982 7.02666 7.07271 7.61022 7.71622 7.89164 8.04833 8.66054 9.06078 9.56192 11.07763 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.002711 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.714671 B =10326.273789 C =10791.344798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.516 5.516 4 C 0.159 3.841 5 C -0.505 4.505 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.019 3.981 14 C 0.119 3.881 15 H 0.118 0.882 16 O -0.540 6.540 17 C 0.026 3.974 18 O -0.288 6.288 19 C 0.144 3.856 20 C -0.202 4.202 21 C -0.075 4.075 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.073 4.073 25 Cl -0.054 7.054 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.022 0.978 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.365 0.635 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 5.317 -25.822 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.084 4.084 3 N -0.239 5.239 4 C 0.033 3.967 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.110 4.110 14 C 0.059 3.941 15 H 0.135 0.865 16 O -0.344 6.344 17 C -0.050 4.050 18 O -0.200 6.200 19 C 0.097 3.903 20 C -0.221 4.221 21 C -0.094 4.094 22 C -0.171 4.171 23 C -0.093 4.093 24 C -0.100 4.100 25 Cl -0.025 7.025 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.040 0.960 32 H 0.008 0.992 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.212 0.788 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.962 4.984 -25.585 26.739 hybrid contribution -2.366 1.024 0.617 2.650 sum -8.328 6.007 -24.968 26.997 Atomic orbital electron populations 1.22408 1.00139 1.01444 1.00579 1.22388 0.91286 0.90849 1.03913 1.62071 1.57441 1.01937 1.02414 1.20262 0.94910 0.94445 0.87118 1.21024 1.17597 1.25901 0.89833 0.90053 1.24909 0.95971 0.96137 0.96395 1.69898 1.39113 1.43984 1.00912 0.86883 0.82513 0.82154 0.78253 1.20416 1.21164 1.19411 1.22705 0.96759 0.99229 0.92306 1.22018 1.02209 0.80664 0.89200 0.86459 1.86693 1.28582 1.25114 1.94054 1.23770 0.96285 1.00858 0.84057 1.86274 1.60307 1.58502 1.14959 1.18801 0.93339 0.91702 0.86484 1.21292 1.00768 0.99464 1.00594 1.21058 0.98345 0.98015 0.91936 1.21011 0.98066 0.99418 0.98590 1.20941 0.97015 0.94826 0.96490 1.20252 0.97884 0.98759 0.93093 1.98385 1.51855 1.53608 1.98667 0.93996 0.92845 0.92548 0.89237 0.89971 0.95963 0.99234 0.92689 0.90566 0.94455 0.78827 0.91751 0.90820 0.84598 0.85215 0.85067 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 9.15 37.16 0.34 -2.59 16 2 C 0.04 0.80 5.48 -3.82 -0.02 0.78 16 3 N -0.52 -10.27 4.61 -236.06 -1.09 -11.36 16 4 C 0.16 3.72 3.69 -4.98 -0.02 3.70 16 5 C -0.51 -14.23 8.94 -34.44 -0.31 -14.54 16 6 H 0.08 2.53 7.93 -52.49 -0.42 2.12 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 9 Si 0.87 21.26 27.37 -169.99 -4.65 16.61 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.25 6.69 56.52 0.38 -5.87 16 13 C 0.02 0.29 4.58 -3.82 -0.02 0.27 16 14 C 0.12 1.59 3.47 -26.73 -0.09 1.50 16 15 H 0.12 1.81 8.14 -51.93 -0.42 1.38 16 16 O -0.54 -7.46 10.23 -40.08 -0.41 -7.87 16 17 C 0.03 0.28 4.37 37.16 0.16 0.44 16 18 O -0.29 -3.66 9.56 -24.36 -0.23 -3.89 16 19 C 0.14 1.63 6.68 -39.20 -0.26 1.37 16 20 C -0.20 -1.84 9.04 -39.44 -0.36 -2.19 16 21 C -0.08 -0.56 10.04 -39.60 -0.40 -0.96 16 22 C -0.15 -1.10 10.04 -39.56 -0.40 -1.49 16 23 C -0.07 -0.63 9.83 -39.57 -0.39 -1.02 16 24 C -0.07 -0.80 6.33 -39.36 -0.25 -1.05 16 25 Cl -0.05 -0.63 28.50 -51.86 -1.48 -2.11 16 26 H 0.04 0.54 5.65 -51.93 -0.29 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.00 6.26 -51.93 -0.33 0.68 16 29 H 0.09 1.55 5.53 -51.93 -0.29 1.26 16 30 H 0.08 1.77 7.18 -51.93 -0.37 1.40 16 31 H 0.02 0.53 7.14 -51.93 -0.37 0.16 16 32 H -0.01 -0.23 5.26 -51.93 -0.27 -0.50 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 35 H 0.04 0.51 5.66 -51.93 -0.29 0.22 16 36 H 0.37 3.87 8.31 45.56 0.38 4.25 16 37 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 38 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.14 1.03 6.30 -52.49 -0.33 0.70 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -32.22 349.27 -8.98 -41.20 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.05 Total: 2.86 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.10 Total: -13.93 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.31 Total: -38.13 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.64 Total: -11.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.61 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.22 -8.98 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267192024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.123 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds