Wall clock time and date at job start Tue Mar 31 2020 10:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47052 * 2 1 4 4 C 1.46898 * 110.99956 * 68.69755 * 3 2 1 5 5 C 1.50699 * 109.47060 * 71.35808 * 4 3 2 6 6 H 1.07990 * 120.00065 * 5.07899 * 5 4 3 7 7 C 1.37882 * 119.99688 * 185.07767 * 5 4 3 8 8 N 1.31515 * 119.99422 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00377 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47281 * 89.99827 * 9 7 5 11 11 H 1.48503 * 109.47338 * 210.00146 * 9 7 5 12 12 H 1.48509 * 109.47010 * 330.00011 * 9 7 5 13 13 C 1.46904 * 110.99933 * 304.74788 * 3 2 1 14 14 C 1.53008 * 109.46931 * 287.05421 * 13 3 2 15 15 H 1.08999 * 109.46999 * 304.07053 * 14 13 3 16 16 O 1.42901 * 109.46881 * 64.06851 * 14 13 3 17 17 C 1.52996 * 109.47165 * 184.06954 * 14 13 3 18 18 O 1.42901 * 109.47107 * 174.99890 * 17 14 13 19 19 C 1.35926 * 117.00179 * 180.02562 * 18 17 14 20 20 C 1.38711 * 120.05721 * 359.97438 * 19 18 17 21 21 C 1.38147 * 119.95589 * 180.02562 * 20 19 18 22 22 C 1.38279 * 120.07962 * 0.02562 * 21 20 19 23 23 C 1.38250 * 120.11586 * 0.02562 * 22 21 20 24 24 C 1.38262 * 120.04072 * 359.68739 * 23 22 21 25 25 Cl 1.73600 * 120.03478 * 180.31543 * 24 23 22 26 26 H 1.09003 * 109.47227 * 65.19280 * 1 2 3 27 27 H 1.09003 * 109.46971 * 185.18786 * 1 2 3 28 28 H 1.09000 * 109.47351 * 305.18431 * 1 2 3 29 29 H 1.09003 * 109.47416 * 240.00294 * 2 1 3 30 30 H 1.08996 * 109.47175 * 119.99667 * 2 1 3 31 31 H 1.09001 * 109.47188 * 191.35905 * 4 3 2 32 32 H 1.09003 * 109.47199 * 311.35183 * 4 3 2 33 33 H 0.97006 * 119.99244 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47314 * 167.05724 * 13 3 2 35 35 H 1.09000 * 109.47328 * 47.05195 * 13 3 2 36 36 H 0.96701 * 114.00005 * 60.00750 * 16 14 13 37 37 H 1.08995 * 109.47389 * 294.99871 * 17 14 13 38 38 H 1.09006 * 109.47083 * 55.00295 * 17 14 13 39 39 H 1.08000 * 120.02208 * 0.02662 * 20 19 18 40 40 H 1.08002 * 119.96014 * 179.97438 * 21 20 19 41 41 H 1.07992 * 119.94113 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.97820 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7254 2.0474 1.2777 5 6 2.6102 1.4758 2.3554 6 1 3.3759 0.7579 2.1010 7 6 2.4422 1.8694 3.6661 8 7 3.2148 1.3709 4.6064 9 14 1.1174 3.1105 4.1062 10 1 -0.1461 2.3959 4.4192 11 1 1.5485 3.8958 5.2906 12 1 0.8966 4.0268 2.9585 13 6 1.4581 2.1419 -1.1269 14 6 2.1184 1.6834 -2.4287 15 1 3.1998 1.7914 -2.3453 16 8 1.7939 0.3128 -2.6704 17 6 1.6083 2.5405 -3.5888 18 8 2.3097 2.1910 -4.7838 19 6 1.9745 2.8648 -5.9157 20 6 0.9905 3.8416 -5.8770 21 6 0.6511 4.5248 -7.0288 22 6 1.2907 4.2356 -8.2201 23 6 2.2712 3.2618 -8.2624 24 6 2.6189 2.5792 -7.1114 25 17 3.8558 1.3622 -7.1631 26 1 -0.3634 0.4312 -0.9329 27 1 -0.3633 -1.0235 0.0929 28 1 -0.3634 0.5921 0.8399 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9120 3.1172 1.1838 32 1 0.6803 1.8827 1.5402 33 1 3.0963 1.6475 5.5286 34 1 1.6454 3.2055 -0.9795 35 1 0.3838 1.9665 -1.1831 36 1 0.8459 0.1423 -2.7559 37 1 0.5418 2.3646 -3.7290 38 1 1.7764 3.5937 -3.3638 39 1 0.4900 4.0680 -4.9471 40 1 -0.1154 5.2851 -6.9989 41 1 1.0234 4.7707 -9.1192 42 1 2.7691 3.0374 -9.1942 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267192024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:06 Heat of formation + Delta-G solvation = -80.431822 kcal Electronic energy + Delta-G solvation = -23649.896485 eV Core-core repulsion = 20041.679087 eV Total energy + Delta-G solvation = -3608.217398 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25945 -39.90568 -38.47418 -37.30757 -36.97094 -34.63923 -32.48328 -31.76098 -31.22219 -30.72671 -28.93925 -26.33184 -24.72002 -23.85601 -23.26931 -22.40004 -20.99194 -19.30024 -18.88105 -17.88964 -17.71357 -17.13318 -16.82359 -16.58188 -16.45621 -16.01269 -15.61213 -15.41153 -14.90154 -14.71117 -14.65531 -14.44614 -14.06408 -13.99162 -13.55109 -13.28112 -12.83858 -12.71559 -12.65483 -12.54415 -12.47568 -12.36342 -12.34719 -11.98932 -11.91618 -11.79527 -11.73510 -11.58622 -11.43705 -10.77540 -10.59400 -9.88902 -9.18785 -8.86571 -8.27042 -6.29833 0.15683 0.34316 1.23880 1.33425 1.35862 1.46654 2.00707 2.34629 2.66047 3.06619 3.24857 3.45657 3.74974 3.83700 3.96333 4.02550 4.12522 4.20998 4.26661 4.34905 4.37116 4.44747 4.49782 4.52483 4.64433 4.67026 4.78348 4.79817 4.93985 5.10627 5.13778 5.20974 5.28008 5.29493 5.45838 5.53234 5.61439 5.71500 6.03562 6.29646 6.46558 6.71044 6.77795 6.85154 7.33556 8.90466 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.002711 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.714671 B =10326.273789 C =10791.344798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.170 3.830 5 C -0.513 4.513 6 H 0.029 0.971 7 C 0.003 3.997 8 N -0.952 5.952 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.244 1.244 13 C 0.023 3.977 14 C 0.128 3.872 15 H 0.087 0.913 16 O -0.557 6.557 17 C 0.034 3.966 18 O -0.315 6.315 19 C 0.119 3.881 20 C -0.206 4.206 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.079 4.079 24 C -0.096 4.096 25 Cl -0.076 7.076 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.101 0.899 30 H 0.035 0.965 31 H 0.027 0.973 32 H -0.002 1.002 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.381 0.619 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.808 7.818 -28.129 31.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.080 4.080 3 N -0.265 5.265 4 C 0.043 3.957 5 C -0.551 4.551 6 H 0.047 0.953 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.168 1.168 13 C -0.106 4.106 14 C 0.068 3.932 15 H 0.105 0.895 16 O -0.364 6.364 17 C -0.042 4.042 18 O -0.228 6.228 19 C 0.072 3.928 20 C -0.225 4.225 21 C -0.091 4.091 22 C -0.165 4.165 23 C -0.098 4.098 24 C -0.123 4.123 25 Cl -0.047 7.047 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.119 0.881 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.016 0.984 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.179 0.821 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.351 7.482 -27.934 30.393 hybrid contribution -1.247 0.190 1.215 1.752 sum -10.598 7.671 -26.719 29.750 Atomic orbital electron populations 1.22302 0.97343 1.02432 1.01521 1.22280 0.93588 0.89982 1.02124 1.61900 1.59320 1.02785 1.02470 1.19987 0.93895 0.94304 0.87503 1.21290 1.17146 1.24863 0.91834 0.95280 1.25922 0.98774 0.98582 0.96116 1.70079 1.41622 1.46164 1.01497 0.85668 0.78957 0.79409 0.78592 1.19279 1.20950 1.16785 1.22763 0.98054 0.98934 0.90836 1.21738 1.00531 0.81092 0.89874 0.89464 1.86654 1.30198 1.25501 1.94047 1.23643 0.97226 1.00679 0.82617 1.86209 1.61301 1.59493 1.15788 1.19052 0.94758 0.92955 0.86019 1.21550 1.00102 0.98805 1.02008 1.21480 0.98440 0.97901 0.91302 1.21426 0.96778 0.98451 0.99812 1.21231 0.97415 0.94791 0.96316 1.20565 0.98239 0.99330 0.94208 1.98368 1.52923 1.54694 1.98729 0.90466 0.91402 0.94485 0.88104 0.94665 0.95517 0.98395 0.92547 0.89806 0.91894 0.77028 0.89158 0.89422 0.83020 0.82229 0.82070 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.19 9.15 71.98 0.66 -4.53 16 2 C 0.05 1.78 5.48 86.30 0.47 2.26 16 3 N -0.54 -21.51 4.61 -900.77 -4.15 -25.66 16 4 C 0.17 7.91 3.69 85.56 0.32 8.23 16 5 C -0.51 -30.03 8.94 25.60 0.23 -29.80 16 6 H 0.03 1.94 7.93 -2.92 -0.02 1.92 16 7 C 0.00 0.15 5.47 84.66 0.46 0.61 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.95 43.66 27.37 68.60 1.88 45.54 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.24 -10.18 6.69 99.48 0.67 -9.51 16 13 C 0.02 0.63 4.58 86.31 0.40 1.02 16 14 C 0.13 3.25 3.47 30.60 0.11 3.35 16 15 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 16 O -0.56 -14.66 10.23 -144.34 -1.48 -16.14 16 17 C 0.03 0.64 4.37 71.98 0.31 0.96 16 18 O -0.31 -7.68 9.56 -88.09 -0.84 -8.52 16 19 C 0.12 2.52 6.68 22.52 0.15 2.67 16 20 C -0.21 -3.11 9.04 22.36 0.20 -2.91 16 21 C -0.07 -0.81 10.04 22.26 0.22 -0.58 16 22 C -0.15 -1.59 10.04 22.28 0.22 -1.37 16 23 C -0.08 -1.19 9.83 22.28 0.22 -0.97 16 24 C -0.10 -2.03 6.33 22.41 0.14 -1.89 16 25 Cl -0.08 -1.81 28.50 -2.72 -0.08 -1.89 16 26 H 0.08 1.70 5.65 -2.39 -0.01 1.68 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.23 6.26 -2.39 -0.01 1.21 16 29 H 0.10 3.50 5.53 -2.39 -0.01 3.49 16 30 H 0.03 1.61 7.18 -2.39 -0.02 1.59 16 31 H 0.03 1.22 7.14 -2.39 -0.02 1.20 16 32 H 0.00 -0.07 5.26 -2.39 -0.01 -0.08 16 33 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 34 H 0.08 2.22 7.71 -2.39 -0.02 2.20 16 35 H 0.06 1.45 5.66 -2.39 -0.01 1.44 16 36 H 0.38 7.02 8.31 -74.06 -0.62 6.41 16 37 H 0.09 1.23 7.66 -2.39 -0.02 1.21 16 38 H 0.09 1.40 7.66 -2.38 -0.02 1.38 16 39 H 0.15 1.69 6.30 -2.91 -0.02 1.68 16 40 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.84 349.27 0.13 -74.71 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.39 Total: 15.18 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.12 Total: -22.95 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.85 Total: -85.93 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -2.32 Total: -24.66 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -74.84 0.13 -74.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267192024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.720 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds