Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39828 * 119.76866 * 2 1 4 4 C 1.38866 * 120.18693 * 341.54247 * 3 2 1 5 5 C 1.38124 * 119.86611 * 179.91116 * 4 3 2 6 6 C 1.38304 * 120.10911 * 0.08029 * 5 4 3 7 7 C 1.38282 * 120.14756 * 359.95081 * 6 5 4 8 8 C 1.38095 * 120.02527 * 359.97438 * 7 6 5 9 9 C 1.50655 * 120.17919 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.45251 * 333.90842 * 9 8 7 11 11 C 1.50703 * 109.46342 * 93.87940 * 9 8 7 12 12 O 1.21293 * 119.99961 * 34.09806 * 11 9 8 13 13 N 1.34772 * 120.00044 * 214.09986 * 11 9 8 14 14 C 1.37097 * 119.99941 * 172.93492 * 13 11 9 15 15 H 1.07999 * 120.00295 * 326.58011 * 14 13 11 16 16 C 1.38953 * 119.99809 * 146.57599 * 14 13 11 17 17 N 1.31421 * 120.00059 * 343.00615 * 16 14 13 18 18 Si 1.86799 * 120.00068 * 163.00228 * 16 14 13 19 19 H 1.48498 * 109.47374 * 270.00361 * 18 16 14 20 20 H 1.48495 * 109.46903 * 30.00524 * 18 16 14 21 21 H 1.48501 * 109.47172 * 150.00247 * 18 16 14 22 22 C 1.46510 * 119.99985 * 352.94093 * 13 11 9 23 23 C 1.47201 * 109.47025 * 83.26923 * 22 13 11 24 24 N 6.69850 * 161.75719 * 74.43140 * 2 1 3 25 25 C 1.52904 * 109.52817 * 213.89958 * 9 8 7 26 26 C 1.34560 * 119.77936 * 180.02562 * 2 1 3 27 27 O 1.21292 * 119.61403 * 359.15207 * 26 2 1 28 28 H 1.09007 * 109.46629 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47154 * 299.97253 * 1 2 3 30 30 H 1.08994 * 109.47229 * 59.98289 * 1 2 3 31 31 H 1.07996 * 120.05767 * 359.95198 * 4 3 2 32 32 H 1.07999 * 119.93469 * 179.97438 * 5 4 3 33 33 H 1.07992 * 119.92570 * 179.97438 * 6 5 4 34 34 H 1.07990 * 119.98788 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99635 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.46547 * 203.26693 * 22 13 11 37 37 H 1.08996 * 109.46544 * 323.26581 * 22 13 11 38 38 H 1.08996 * 109.39931 * 71.57106 * 25 9 8 39 39 H 1.09005 * 109.39959 * 191.30345 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2138 0.0000 4 6 1.5176 2.3852 -0.3800 5 6 2.2092 3.5808 -0.3758 6 6 3.5386 3.6119 0.0044 7 6 4.1803 2.4469 0.3827 8 6 3.4939 1.2485 0.3821 9 6 4.1894 -0.0228 0.7941 10 1 5.2598 0.0735 0.6119 11 6 3.9504 -0.2732 2.2608 12 8 2.8950 0.0457 2.7664 13 7 4.9093 -0.8515 3.0108 14 6 4.7520 -0.9482 4.3692 15 1 4.2265 -0.1740 4.9085 16 6 5.2686 -2.0425 5.0523 17 7 5.6043 -3.1293 4.3941 18 14 5.4860 -1.9687 6.9061 19 1 6.8384 -1.4451 7.2255 20 1 4.4570 -1.0711 7.4898 21 1 5.3352 -3.3314 7.4768 22 6 6.1199 -1.3767 2.3743 23 6 7.0834 -0.2820 2.1741 24 7 7.8268 0.5628 2.0200 25 6 3.6376 -1.1940 -0.0193 26 6 2.1333 -1.1679 -0.0005 27 8 1.5159 -2.2118 0.0146 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5141 -0.8898 31 1 0.4797 2.3614 -0.6776 32 1 1.7114 4.4924 -0.6716 33 1 4.0766 4.5483 0.0062 34 1 5.2185 2.4741 0.6786 35 1 5.9652 -3.8930 4.8709 36 1 6.5644 -2.1397 3.0132 37 1 5.8624 -1.8150 1.4101 38 1 3.9875 -1.1166 -1.0487 39 1 3.9890 -2.1315 0.4116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363026090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = 5.407950 kcal Electronic energy + Delta-G solvation = -26547.114798 eV Core-core repulsion = 22841.512198 eV Total energy + Delta-G solvation = -3705.602600 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17654 -38.82503 -38.40793 -36.13474 -35.32346 -34.78067 -34.01118 -31.86159 -30.19076 -29.37899 -27.77707 -27.39511 -25.43075 -24.09504 -22.75104 -21.85244 -19.97598 -18.47326 -18.10116 -17.65991 -16.88657 -16.59151 -16.00189 -15.63017 -15.26826 -14.89584 -14.60845 -14.22068 -14.18651 -14.03548 -13.57717 -13.34180 -13.28081 -13.14195 -12.62063 -12.52143 -12.29627 -12.15552 -12.08923 -11.91958 -11.76425 -11.37837 -11.28909 -11.14445 -10.89912 -10.79596 -10.55587 -10.43547 -10.07523 -9.69254 -9.24554 -8.99810 -8.49798 -7.91100 -7.71594 -6.54685 -4.21601 1.35682 1.44504 2.75853 3.00813 3.07509 3.13982 3.19808 3.25725 3.34266 3.53244 3.85937 4.05077 4.47747 4.58420 4.66260 4.75250 4.84225 4.99607 5.08662 5.15413 5.26928 5.32391 5.42983 5.46322 5.51883 5.63750 5.71745 5.77505 5.84202 5.88321 5.94544 6.10112 6.21478 6.45163 6.61874 6.71135 6.75392 6.98488 7.40438 7.47684 7.90005 8.12033 8.17072 8.22204 8.90520 9.07947 9.64151 10.49591 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.005337 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.918157 B = 5244.888588 C = 5903.315126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.547 5.547 3 C 0.187 3.813 4 C -0.159 4.159 5 C -0.092 4.092 6 C -0.146 4.146 7 C -0.078 4.078 8 C -0.094 4.094 9 C -0.070 4.070 10 H 0.101 0.899 11 C 0.472 3.528 12 O -0.547 6.547 13 N -0.437 5.437 14 C -0.303 4.303 15 H 0.098 0.902 16 C 0.035 3.965 17 N -0.874 5.874 18 Si 0.926 3.074 19 H -0.276 1.276 20 H -0.268 1.268 21 H -0.281 1.281 22 C 0.175 3.825 23 C 0.204 3.796 24 N -0.462 5.462 25 C -0.127 4.127 26 C 0.532 3.468 27 O -0.526 6.526 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.275 0.725 36 H 0.167 0.833 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 6.364 -10.747 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.269 5.269 3 C 0.091 3.909 4 C -0.179 4.179 5 C -0.110 4.110 6 C -0.165 4.165 7 C -0.096 4.096 8 C -0.097 4.097 9 C -0.092 4.092 10 H 0.119 0.881 11 C 0.259 3.741 12 O -0.427 6.427 13 N -0.158 5.158 14 C -0.430 4.430 15 H 0.115 0.885 16 C -0.169 4.169 17 N -0.513 5.513 18 Si 0.752 3.248 19 H -0.201 1.201 20 H -0.192 1.192 21 H -0.206 1.206 22 C 0.048 3.952 23 C -0.114 4.114 24 N -0.142 5.142 25 C -0.167 4.167 26 C 0.322 3.678 27 O -0.402 6.402 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.183 0.817 37 H 0.113 0.887 38 H 0.126 0.874 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.114 6.896 -10.622 13.041 hybrid contribution 0.003 -0.295 1.040 1.081 sum -3.111 6.601 -9.582 12.045 Atomic orbital electron populations 1.21809 0.78324 1.04783 1.01801 1.45150 1.07360 1.04674 1.69738 1.17542 0.91003 0.85574 0.96749 1.20726 1.00504 0.91453 1.05248 1.20890 0.94349 0.96971 0.98826 1.20991 0.95082 0.97951 1.02494 1.20845 0.99886 0.91302 0.97586 1.19076 0.93023 0.94974 1.02636 1.20259 1.01062 0.92271 0.95577 0.88100 1.20032 0.84504 0.83219 0.86370 1.90586 1.24913 1.54176 1.72989 1.43322 1.12410 1.53043 1.06975 1.19585 1.37077 1.06125 0.80256 0.88459 1.25397 0.97075 0.93571 1.00816 1.69605 1.41896 1.02866 1.36926 0.85908 0.78998 0.77910 0.81952 1.20148 1.19208 1.20615 1.19616 0.83834 0.90578 1.01189 1.30741 0.93959 0.94910 0.91798 1.81030 1.11733 1.10938 1.10508 1.21661 0.91518 1.00938 1.02626 1.20462 0.90553 0.82588 0.74204 1.90694 1.69864 1.31308 1.48343 0.88870 0.91282 0.91809 0.85614 0.85833 0.85982 0.85749 0.91469 0.81721 0.88673 0.87416 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 9.67 59.85 0.58 1.59 16 2 N -0.55 -9.12 3.09 -121.01 -0.37 -9.50 16 3 C 0.19 2.98 6.09 -83.74 -0.51 2.47 16 4 C -0.16 -2.08 9.34 -39.39 -0.37 -2.44 16 5 C -0.09 -1.08 10.04 -39.60 -0.40 -1.48 16 6 C -0.15 -1.85 10.04 -39.54 -0.40 -2.25 16 7 C -0.08 -1.16 9.69 -39.62 -0.38 -1.55 16 8 C -0.09 -1.57 4.49 -104.46 -0.47 -2.04 16 9 C -0.07 -1.21 1.93 -92.99 -0.18 -1.39 16 10 H 0.10 1.57 5.65 -51.93 -0.29 1.28 16 11 C 0.47 10.56 6.24 -10.99 -0.07 10.49 16 12 O -0.55 -14.29 15.88 5.55 0.09 -14.20 16 13 N -0.44 -10.01 2.54 -117.93 -0.30 -10.31 16 14 C -0.30 -7.74 8.99 -14.93 -0.13 -7.88 16 15 H 0.10 2.64 7.73 -52.49 -0.41 2.23 16 16 C 0.03 0.85 5.06 -17.46 -0.09 0.76 16 17 N -0.87 -21.04 10.99 55.50 0.61 -20.43 16 18 Si 0.93 19.56 29.59 -169.99 -5.03 14.53 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 C 0.18 3.35 5.08 -6.82 -0.03 3.31 16 23 C 0.20 3.84 14.28 -20.76 -0.30 3.55 16 24 N -0.46 -9.10 18.54 42.15 0.78 -8.32 16 25 C -0.13 -2.02 5.27 -28.05 -0.15 -2.17 16 26 C 0.53 9.80 6.92 -11.20 -0.08 9.72 16 27 O -0.53 -11.03 16.35 5.55 0.09 -10.94 16 28 H 0.09 1.34 6.86 -51.93 -0.36 0.98 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.65 7.30 -51.93 -0.38 0.27 16 31 H 0.13 1.33 6.65 -52.49 -0.35 0.99 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 36 H 0.17 3.42 5.11 -51.93 -0.27 3.15 16 37 H 0.10 1.49 6.24 -51.93 -0.32 1.17 16 38 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.12 1.87 7.31 -51.93 -0.38 1.49 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -31.79 333.03 -6.09 -37.88 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.00 Total: 5.56 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -2.97 Total: 10.71 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.72 Total: -48.56 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.18 Total: -25.15 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.79 -6.09 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363026090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.288 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds