Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39828 * 119.76866 * 2 1 4 4 C 1.38866 * 120.18693 * 341.54247 * 3 2 1 5 5 C 1.38124 * 119.86611 * 179.91116 * 4 3 2 6 6 C 1.38304 * 120.10911 * 0.08029 * 5 4 3 7 7 C 1.38282 * 120.14756 * 359.95081 * 6 5 4 8 8 C 1.38095 * 120.02527 * 359.97438 * 7 6 5 9 9 C 1.50655 * 120.17919 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.45251 * 333.90842 * 9 8 7 11 11 C 1.50703 * 109.46342 * 93.87940 * 9 8 7 12 12 O 1.21293 * 119.99961 * 34.09806 * 11 9 8 13 13 N 1.34772 * 120.00044 * 214.09986 * 11 9 8 14 14 C 1.37097 * 119.99941 * 172.93492 * 13 11 9 15 15 H 1.07999 * 120.00295 * 326.58011 * 14 13 11 16 16 C 1.38953 * 119.99809 * 146.57599 * 14 13 11 17 17 N 1.31421 * 120.00059 * 343.00615 * 16 14 13 18 18 Si 1.86799 * 120.00068 * 163.00228 * 16 14 13 19 19 H 1.48498 * 109.47374 * 270.00361 * 18 16 14 20 20 H 1.48495 * 109.46903 * 30.00524 * 18 16 14 21 21 H 1.48501 * 109.47172 * 150.00247 * 18 16 14 22 22 C 1.46510 * 119.99985 * 352.94093 * 13 11 9 23 23 C 1.47201 * 109.47025 * 83.26923 * 22 13 11 24 24 N 6.69850 * 161.75719 * 74.43140 * 2 1 3 25 25 C 1.52904 * 109.52817 * 213.89958 * 9 8 7 26 26 C 1.34560 * 119.77936 * 180.02562 * 2 1 3 27 27 O 1.21292 * 119.61403 * 359.15207 * 26 2 1 28 28 H 1.09007 * 109.46629 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47154 * 299.97253 * 1 2 3 30 30 H 1.08994 * 109.47229 * 59.98289 * 1 2 3 31 31 H 1.07996 * 120.05767 * 359.95198 * 4 3 2 32 32 H 1.07999 * 119.93469 * 179.97438 * 5 4 3 33 33 H 1.07992 * 119.92570 * 179.97438 * 6 5 4 34 34 H 1.07990 * 119.98788 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99635 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.46547 * 203.26693 * 22 13 11 37 37 H 1.08996 * 109.46544 * 323.26581 * 22 13 11 38 38 H 1.08996 * 109.39931 * 71.57106 * 25 9 8 39 39 H 1.09005 * 109.39959 * 191.30345 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2138 0.0000 4 6 1.5176 2.3852 -0.3800 5 6 2.2092 3.5808 -0.3758 6 6 3.5386 3.6119 0.0044 7 6 4.1803 2.4469 0.3827 8 6 3.4939 1.2485 0.3821 9 6 4.1894 -0.0228 0.7941 10 1 5.2598 0.0735 0.6119 11 6 3.9504 -0.2732 2.2608 12 8 2.8950 0.0457 2.7664 13 7 4.9093 -0.8515 3.0108 14 6 4.7520 -0.9482 4.3692 15 1 4.2265 -0.1740 4.9085 16 6 5.2686 -2.0425 5.0523 17 7 5.6043 -3.1293 4.3941 18 14 5.4860 -1.9687 6.9061 19 1 6.8384 -1.4451 7.2255 20 1 4.4570 -1.0711 7.4898 21 1 5.3352 -3.3314 7.4768 22 6 6.1199 -1.3767 2.3743 23 6 7.0834 -0.2820 2.1741 24 7 7.8268 0.5628 2.0200 25 6 3.6376 -1.1940 -0.0193 26 6 2.1333 -1.1679 -0.0005 27 8 1.5159 -2.2118 0.0146 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5141 -0.8898 31 1 0.4797 2.3614 -0.6776 32 1 1.7114 4.4924 -0.6716 33 1 4.0766 4.5483 0.0062 34 1 5.2185 2.4741 0.6786 35 1 5.9652 -3.8930 4.8709 36 1 6.5644 -2.1397 3.0132 37 1 5.8624 -1.8150 1.4101 38 1 3.9875 -1.1166 -1.0487 39 1 3.9890 -2.1315 0.4116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363026090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -13.571493 kcal Electronic energy + Delta-G solvation = -26547.937808 eV Core-core repulsion = 22841.512198 eV Total energy + Delta-G solvation = -3706.425611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.46161 -40.44781 -39.63583 -37.77717 -36.55869 -36.46064 -35.41876 -33.67129 -31.27361 -30.50851 -29.35616 -28.74224 -27.01688 -25.48988 -23.95073 -23.02538 -21.47514 -19.91312 -19.71641 -18.92896 -18.42667 -17.88197 -17.48478 -17.16970 -16.75046 -16.35722 -15.81843 -15.66233 -15.51249 -15.32850 -14.96810 -14.86927 -14.74226 -14.52934 -13.93201 -13.91208 -13.63844 -13.50143 -13.40523 -13.25843 -13.16600 -13.00634 -12.90981 -12.57465 -12.32802 -12.17982 -12.14298 -12.02030 -11.26093 -11.07100 -11.00155 -10.56888 -9.77020 -9.72822 -8.88387 -8.39950 -6.14310 0.22822 0.38233 1.36861 1.43883 1.46854 1.51990 1.61712 1.79432 1.82353 1.88523 2.28298 2.74866 2.85477 3.08619 3.27862 3.35353 3.52634 3.70257 3.82534 3.95533 4.12816 4.25709 4.30451 4.34304 4.41374 4.46073 4.51699 4.59166 4.62492 4.78098 4.79555 5.00156 5.09156 5.14849 5.42774 5.46015 5.59263 5.62095 5.94203 6.08322 6.25805 6.38368 6.56079 6.86098 7.07860 7.25727 7.86047 8.62694 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.005337 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.918157 B = 5244.888588 C = 5903.315126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.550 5.550 3 C 0.161 3.839 4 C -0.155 4.155 5 C -0.083 4.083 6 C -0.143 4.143 7 C -0.093 4.093 8 C -0.121 4.121 9 C -0.056 4.056 10 H 0.117 0.883 11 C 0.464 3.536 12 O -0.595 6.595 13 N -0.449 5.449 14 C -0.336 4.336 15 H 0.068 0.932 16 C 0.010 3.990 17 N -0.882 5.882 18 Si 0.978 3.022 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.272 1.272 22 C 0.181 3.819 23 C 0.217 3.783 24 N -0.472 5.472 25 C -0.127 4.127 26 C 0.518 3.482 27 O -0.568 6.568 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.150 0.850 34 H 0.121 0.879 35 H 0.282 0.718 36 H 0.155 0.845 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 7.907 -12.162 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.272 5.272 3 C 0.066 3.934 4 C -0.175 4.175 5 C -0.101 4.101 6 C -0.161 4.161 7 C -0.112 4.112 8 C -0.124 4.124 9 C -0.078 4.078 10 H 0.135 0.865 11 C 0.253 3.747 12 O -0.478 6.478 13 N -0.169 5.169 14 C -0.464 4.464 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.520 5.520 18 Si 0.802 3.198 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.197 1.197 22 C 0.054 3.946 23 C -0.100 4.100 24 N -0.152 5.152 25 C -0.166 4.166 26 C 0.309 3.691 27 O -0.447 6.447 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.172 0.828 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.767 8.462 -12.058 14.989 hybrid contribution -0.134 -0.669 1.476 1.626 sum -2.901 7.793 -10.582 13.458 Atomic orbital electron populations 1.21981 0.77075 1.04474 1.03593 1.45272 1.08403 1.04626 1.68862 1.17850 0.91114 0.86123 0.98302 1.21120 1.01730 0.90767 1.03924 1.21369 0.93916 0.97895 0.96900 1.21378 0.95726 0.98109 1.00917 1.20979 1.00029 0.91781 0.98387 1.19160 0.93818 0.95015 1.04375 1.20141 1.02258 0.93659 0.91734 0.86542 1.20913 0.83583 0.81784 0.88399 1.90537 1.26796 1.55893 1.74539 1.43494 1.13720 1.53187 1.06466 1.19431 1.38680 1.06350 0.81910 0.91454 1.25953 0.96363 0.93059 1.03961 1.69651 1.41358 1.02946 1.38074 0.85150 0.78804 0.77895 0.77937 1.19147 1.20430 1.19669 1.19667 0.82492 0.90073 1.02352 1.30535 0.93591 0.94556 0.91366 1.81040 1.12036 1.11024 1.11062 1.21744 0.90149 0.99974 1.04756 1.20931 0.91638 0.82693 0.73831 1.90662 1.70745 1.32608 1.50692 0.90303 0.91458 0.87886 0.83021 0.81896 0.83257 0.86101 0.90817 0.82839 0.85182 0.83218 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.86 9.67 127.77 1.24 3.09 16 2 N -0.55 -18.14 3.09 -655.27 -2.02 -20.16 16 3 C 0.16 4.92 6.09 38.17 0.23 5.15 16 4 C -0.16 -3.59 9.34 22.39 0.21 -3.38 16 5 C -0.08 -1.61 10.04 22.26 0.22 -1.39 16 6 C -0.14 -3.16 10.04 22.30 0.22 -2.94 16 7 C -0.09 -2.65 9.69 22.25 0.22 -2.44 16 8 C -0.12 -3.92 4.49 -19.76 -0.09 -4.01 16 9 C -0.06 -1.93 1.93 -12.33 -0.02 -1.95 16 10 H 0.12 3.51 5.65 -2.39 -0.01 3.50 16 11 C 0.46 21.27 6.24 87.66 0.55 21.82 16 12 O -0.59 -32.36 15.88 -3.07 -0.05 -32.41 16 13 N -0.45 -20.98 2.54 -645.40 -1.64 -22.62 16 14 C -0.34 -17.75 8.99 84.04 0.76 -16.99 16 15 H 0.07 3.88 7.73 -2.91 -0.02 3.85 16 16 C 0.01 0.47 5.06 84.93 0.43 0.90 16 17 N -0.88 -42.43 10.99 21.67 0.24 -42.19 16 18 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 22 C 0.18 6.85 5.08 84.57 0.43 7.28 16 23 C 0.22 8.02 14.28 89.44 1.28 9.30 16 24 N -0.47 -18.10 18.54 20.00 0.37 -17.73 16 25 C -0.13 -3.94 5.27 29.74 0.16 -3.78 16 26 C 0.52 19.28 6.92 87.62 0.61 19.89 16 27 O -0.57 -24.54 16.35 -3.07 -0.05 -24.59 16 28 H 0.08 2.32 6.86 -2.38 -0.02 2.30 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.87 7.30 -2.39 -0.02 1.85 16 31 H 0.15 2.62 6.65 -2.91 -0.02 2.60 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.12 3.42 8.06 -2.92 -0.02 3.40 16 35 H 0.28 12.64 8.31 -92.71 -0.77 11.87 16 36 H 0.16 6.33 5.11 -2.39 -0.01 6.32 16 37 H 0.13 3.94 6.24 -2.39 -0.01 3.93 16 38 H 0.15 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.11 3.56 7.31 -2.38 -0.02 3.54 16 Total: -1.00 -71.80 333.03 6.41 -65.39 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.11 Total: 21.39 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 6.43 Total: 30.54 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.06 Total: -102.70 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -0.10 Total: -57.00 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -71.80 6.41 -65.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363026090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.816 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds