Wall clock time and date at job start Tue Mar 31 2020 10:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00067 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46691 * 65.00577 * 4 3 2 6 6 C 1.36947 * 119.99843 * 269.99468 * 5 4 3 7 7 H 1.07992 * 120.00041 * 322.66154 * 6 5 4 8 8 C 1.38806 * 119.99823 * 142.65287 * 6 5 4 9 9 N 1.31617 * 119.99872 * 158.21857 * 8 6 5 10 10 Si 1.86808 * 120.00088 * 338.22206 * 8 6 5 11 11 H 1.48495 * 109.47105 * 95.75523 * 10 8 6 12 12 H 1.48508 * 109.46704 * 215.75208 * 10 8 6 13 13 H 1.48496 * 109.46946 * 335.74600 * 10 8 6 14 14 C 1.46499 * 120.00357 * 89.99954 * 5 4 3 15 15 C 1.52999 * 109.46995 * 84.66157 * 14 5 4 16 16 H 1.09003 * 109.47200 * 60.00584 * 15 14 5 17 17 O 1.42901 * 109.47291 * 299.99747 * 15 14 5 18 18 C 1.53009 * 109.46801 * 180.02562 * 15 14 5 19 19 C 1.50696 * 109.46772 * 184.99948 * 18 15 14 20 20 C 1.38265 * 119.99219 * 90.00326 * 19 18 15 21 21 C 1.38222 * 120.02391 * 179.71989 * 20 19 18 22 22 C 1.38228 * 120.01537 * 0.27858 * 21 20 19 23 23 C 1.38332 * 119.99017 * 359.97438 * 22 21 20 24 24 Cl 1.73595 * 120.01640 * 179.97438 * 23 22 21 25 25 C 1.38197 * 119.99788 * 270.27544 * 19 18 15 26 26 H 1.09000 * 109.47059 * 59.99684 * 1 2 3 27 27 H 1.09007 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47296 * 299.99658 * 1 2 3 29 29 H 1.09006 * 109.47150 * 60.00371 * 3 2 1 30 30 H 1.08997 * 109.47292 * 300.00397 * 3 2 1 31 31 H 1.08999 * 109.47479 * 305.00467 * 4 3 2 32 32 H 1.08997 * 109.47177 * 185.00043 * 4 3 2 33 33 H 0.97007 * 119.99914 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46732 * 324.65962 * 14 5 4 35 35 H 1.09002 * 109.47061 * 204.66577 * 14 5 4 36 36 H 0.96701 * 114.00067 * 300.00604 * 17 15 14 37 37 H 1.08998 * 109.46974 * 64.99734 * 18 15 14 38 38 H 1.09000 * 109.47065 * 304.99712 * 18 15 14 39 39 H 1.07998 * 119.98627 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.99021 * 180.29335 * 21 20 19 41 41 H 1.08008 * 120.00932 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00028 * 359.97418 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9765 0.5640 -1.2510 6 6 4.0977 -0.7976 -1.3346 7 1 4.4644 -1.3600 -0.4888 8 6 3.7491 -1.4546 -2.5066 9 7 4.2413 -2.6480 -2.7633 10 14 2.5815 -0.6451 -3.7195 11 1 3.3650 0.0441 -4.7760 12 1 1.7168 -1.6805 -4.3404 13 1 1.7346 0.3443 -3.0061 14 6 4.2881 1.3998 -2.4131 15 6 5.7321 1.8954 -2.3123 16 1 6.4086 1.0411 -2.2875 17 8 5.8900 2.6631 -1.1174 18 6 6.0573 2.7689 -3.5258 19 6 7.5133 3.1562 -3.4901 20 6 8.4570 2.3543 -4.1050 21 6 9.7919 2.7118 -4.0777 22 6 10.1848 3.8684 -3.4306 23 6 9.2418 4.6684 -2.8108 24 17 9.7346 6.1207 -1.9974 25 6 7.9056 4.3097 -2.8381 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5684 0.8426 32 1 3.9784 2.1764 0.0902 33 1 3.9980 -3.1070 -3.5825 34 1 3.6116 2.2541 -2.4380 35 1 4.1676 0.8143 -3.3246 36 1 5.3174 3.4410 -1.0711 37 1 5.4415 3.6679 -3.5017 38 1 5.8518 2.2120 -4.4399 39 1 8.1505 1.4504 -4.6103 40 1 10.5280 2.0875 -4.5622 41 1 11.2280 4.1475 -3.4090 42 1 7.1688 4.9339 -2.3544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459539141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:58 Heat of formation + Delta-G solvation = -54.992775 kcal Electronic energy + Delta-G solvation = -24263.924071 eV Core-core repulsion = 20656.809793 eV Total energy + Delta-G solvation = -3607.114278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.54621 -37.85425 -37.00326 -36.44574 -34.81601 -32.71589 -31.62323 -30.75274 -29.95654 -28.29307 -25.82494 -25.70482 -23.35358 -22.67259 -22.16292 -20.91274 -20.15033 -17.29505 -16.74239 -15.95734 -15.81341 -15.71027 -15.34855 -15.25893 -15.20722 -14.55632 -14.31726 -13.99459 -13.74398 -13.56255 -13.24497 -13.06304 -12.60668 -12.38481 -11.99455 -11.77740 -11.53823 -11.50232 -11.35631 -11.20863 -11.05242 -11.01435 -10.87181 -10.60558 -10.44000 -10.31428 -10.05400 -9.55928 -9.49112 -8.98101 -8.84809 -8.61030 -8.41192 -6.75187 -5.89896 -3.28822 1.17318 1.29004 2.08357 3.28241 3.48543 3.54774 3.63177 4.49501 4.57899 4.64769 4.76657 4.87583 4.98866 5.09402 5.28721 5.30934 5.40804 5.42572 5.55995 5.65639 5.72032 5.74801 5.76306 5.88486 5.95570 5.96310 6.01774 6.06630 6.10101 6.19404 6.22831 6.33631 6.38016 6.49855 6.54531 6.77782 6.82371 6.87588 7.88915 8.09595 8.16402 8.46831 9.06350 9.79678 10.16617 11.26608 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.003675 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.209013 B = 7616.626918 C = 8596.403449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.039 3.961 4 C 0.152 3.848 5 N -0.589 5.589 6 C -0.241 4.241 7 H 0.079 0.921 8 C 0.035 3.965 9 N -0.906 5.906 10 Si 0.875 3.125 11 H -0.293 1.293 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.109 3.891 15 C 0.095 3.905 16 H 0.106 0.894 17 O -0.549 6.549 18 C -0.120 4.120 19 C -0.050 4.050 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.033 4.033 24 Cl -0.081 7.081 25 C -0.097 4.097 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.357 0.643 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 15.522 -1.347 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C -0.040 4.040 4 C 0.026 3.974 5 N -0.309 5.309 6 C -0.369 4.369 7 H 0.097 0.903 8 C -0.164 4.164 9 N -0.548 5.548 10 Si 0.707 3.293 11 H -0.222 1.222 12 H -0.233 1.233 13 H -0.194 1.194 14 C -0.018 4.018 15 C 0.033 3.967 16 H 0.124 0.876 17 O -0.352 6.352 18 C -0.158 4.158 19 C -0.050 4.050 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.060 4.060 24 Cl -0.052 7.052 25 C -0.116 4.116 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.202 0.798 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.462 14.836 -1.223 15.857 hybrid contribution -1.431 1.096 -0.985 2.054 sum 4.031 15.932 -2.208 16.582 Atomic orbital electron populations 1.22647 0.83754 1.01867 0.98419 1.88192 1.17060 1.27174 1.94822 1.23430 0.98395 0.84789 0.97407 1.21063 0.88614 0.97260 0.90481 1.43907 1.75570 1.03259 1.08212 1.18724 1.36717 0.80444 1.01061 0.90321 1.25401 0.97871 0.95056 0.98082 1.69860 1.43997 1.15250 1.25725 0.86975 0.83148 0.78626 0.80573 1.22211 1.23274 1.19367 1.21849 0.92742 0.94445 0.92736 1.22787 0.99934 0.92283 0.81667 0.87640 1.86666 1.65617 1.41642 1.41267 1.21498 0.91524 1.01203 1.01614 1.19789 0.96150 0.93436 0.95661 1.21251 0.92815 0.99616 0.99425 1.21071 0.96226 0.96106 0.99047 1.20967 0.99028 0.95116 0.99068 1.20875 0.94546 0.90268 1.00290 1.98353 1.91810 1.36712 1.78349 1.20852 0.93881 0.97403 0.99469 0.95303 0.90360 0.95341 0.95324 0.94996 0.92251 0.91915 0.93000 0.94580 0.91614 0.79807 0.90839 0.89790 0.85233 0.85260 0.85418 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.55 10.18 -35.23 -0.36 -7.90 16 3 C 0.04 0.72 6.28 37.16 0.23 0.95 16 4 C 0.15 2.95 5.84 -4.04 -0.02 2.92 16 5 N -0.59 -13.32 2.03 -173.24 -0.35 -13.68 16 6 C -0.24 -6.63 9.43 -15.06 -0.14 -6.77 16 7 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 8 C 0.03 1.00 5.28 -17.43 -0.09 0.90 16 9 N -0.91 -27.57 13.97 55.49 0.78 -26.80 16 10 Si 0.88 22.04 24.98 -169.99 -4.25 17.79 16 11 H -0.29 -7.00 6.69 56.52 0.38 -6.62 16 12 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.11 2.14 4.05 -4.04 -0.02 2.12 16 15 C 0.09 1.61 3.23 -26.73 -0.09 1.52 16 16 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 17 O -0.55 -8.68 11.15 -35.23 -0.39 -9.07 16 18 C -0.12 -1.63 5.03 -27.88 -0.14 -1.77 16 19 C -0.05 -0.67 4.97 -104.63 -0.52 -1.19 16 20 C -0.11 -1.46 9.70 -39.58 -0.38 -1.84 16 21 C -0.11 -1.22 10.04 -39.59 -0.40 -1.61 16 22 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 23 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 24 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 25 C -0.10 -1.23 9.17 -39.55 -0.36 -1.60 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.06 1.02 6.35 -51.93 -0.33 0.69 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 34 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.07 1.45 3.48 -51.93 -0.18 1.27 16 36 H 0.36 4.26 8.68 45.56 0.40 4.65 16 37 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -32.12 360.65 -7.70 -39.82 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.60 Total: 4.00 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.46 Total: -7.19 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.42 Total: -40.47 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.75 Total: -16.97 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.25 Total: 17.79 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.12 -7.70 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459539141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.173 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds