Wall clock time and date at job start Tue Mar 31 2020 10:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00067 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46691 * 65.00577 * 4 3 2 6 6 C 1.36947 * 119.99843 * 269.99468 * 5 4 3 7 7 H 1.07992 * 120.00041 * 322.66154 * 6 5 4 8 8 C 1.38806 * 119.99823 * 142.65287 * 6 5 4 9 9 N 1.31617 * 119.99872 * 158.21857 * 8 6 5 10 10 Si 1.86808 * 120.00088 * 338.22206 * 8 6 5 11 11 H 1.48495 * 109.47105 * 95.75523 * 10 8 6 12 12 H 1.48508 * 109.46704 * 215.75208 * 10 8 6 13 13 H 1.48496 * 109.46946 * 335.74600 * 10 8 6 14 14 C 1.46499 * 120.00357 * 89.99954 * 5 4 3 15 15 C 1.52999 * 109.46995 * 84.66157 * 14 5 4 16 16 H 1.09003 * 109.47200 * 60.00584 * 15 14 5 17 17 O 1.42901 * 109.47291 * 299.99747 * 15 14 5 18 18 C 1.53009 * 109.46801 * 180.02562 * 15 14 5 19 19 C 1.50696 * 109.46772 * 184.99948 * 18 15 14 20 20 C 1.38265 * 119.99219 * 90.00326 * 19 18 15 21 21 C 1.38222 * 120.02391 * 179.71989 * 20 19 18 22 22 C 1.38228 * 120.01537 * 0.27858 * 21 20 19 23 23 C 1.38332 * 119.99017 * 359.97438 * 22 21 20 24 24 Cl 1.73595 * 120.01640 * 179.97438 * 23 22 21 25 25 C 1.38197 * 119.99788 * 270.27544 * 19 18 15 26 26 H 1.09000 * 109.47059 * 59.99684 * 1 2 3 27 27 H 1.09007 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47296 * 299.99658 * 1 2 3 29 29 H 1.09006 * 109.47150 * 60.00371 * 3 2 1 30 30 H 1.08997 * 109.47292 * 300.00397 * 3 2 1 31 31 H 1.08999 * 109.47479 * 305.00467 * 4 3 2 32 32 H 1.08997 * 109.47177 * 185.00043 * 4 3 2 33 33 H 0.97007 * 119.99914 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.46732 * 324.65962 * 14 5 4 35 35 H 1.09002 * 109.47061 * 204.66577 * 14 5 4 36 36 H 0.96701 * 114.00067 * 300.00604 * 17 15 14 37 37 H 1.08998 * 109.46974 * 64.99734 * 18 15 14 38 38 H 1.09000 * 109.47065 * 304.99712 * 18 15 14 39 39 H 1.07998 * 119.98627 * 359.97438 * 20 19 18 40 40 H 1.08004 * 119.99021 * 180.29335 * 21 20 19 41 41 H 1.08008 * 120.00932 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.00028 * 359.97418 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9765 0.5640 -1.2510 6 6 4.0977 -0.7976 -1.3346 7 1 4.4644 -1.3600 -0.4888 8 6 3.7491 -1.4546 -2.5066 9 7 4.2413 -2.6480 -2.7633 10 14 2.5815 -0.6451 -3.7195 11 1 3.3650 0.0441 -4.7760 12 1 1.7168 -1.6805 -4.3404 13 1 1.7346 0.3443 -3.0061 14 6 4.2881 1.3998 -2.4131 15 6 5.7321 1.8954 -2.3123 16 1 6.4086 1.0411 -2.2875 17 8 5.8900 2.6631 -1.1174 18 6 6.0573 2.7689 -3.5258 19 6 7.5133 3.1562 -3.4901 20 6 8.4570 2.3543 -4.1050 21 6 9.7919 2.7118 -4.0777 22 6 10.1848 3.8684 -3.4306 23 6 9.2418 4.6684 -2.8108 24 17 9.7346 6.1207 -1.9974 25 6 7.9056 4.3097 -2.8381 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8508 0.5684 0.8426 32 1 3.9784 2.1764 0.0902 33 1 3.9980 -3.1070 -3.5825 34 1 3.6116 2.2541 -2.4380 35 1 4.1676 0.8143 -3.3246 36 1 5.3174 3.4410 -1.0711 37 1 5.4415 3.6679 -3.5017 38 1 5.8518 2.2120 -4.4399 39 1 8.1505 1.4504 -4.6103 40 1 10.5280 2.0875 -4.5622 41 1 11.2280 4.1475 -3.4090 42 1 7.1688 4.9339 -2.3544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459539141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:57 Heat of formation + Delta-G solvation = -76.533466 kcal Electronic energy + Delta-G solvation = -24264.858145 eV Core-core repulsion = 20656.809793 eV Total energy + Delta-G solvation = -3608.048353 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.123 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54391 -39.27630 -38.36175 -37.39044 -36.44273 -33.78161 -33.67580 -31.69842 -31.30284 -29.74635 -27.26729 -27.12825 -25.07218 -23.60004 -23.44003 -22.01186 -21.81616 -18.99967 -17.87667 -17.47498 -17.26898 -16.96281 -16.77354 -16.61057 -16.27993 -15.89237 -15.81228 -15.37377 -15.01934 -14.74349 -14.58115 -14.35739 -14.20451 -13.84453 -13.43372 -13.00773 -12.87464 -12.71944 -12.58607 -12.45438 -12.42085 -12.34829 -12.15810 -11.98998 -11.90318 -11.74887 -11.67505 -11.43983 -11.00086 -10.53350 -10.36474 -9.78633 -9.57441 -8.60732 -8.08693 -5.43155 0.22545 0.36702 1.17567 1.28252 1.43952 1.55037 2.48884 2.67719 3.05625 3.27738 3.40273 3.63707 3.77092 3.93218 4.14455 4.18567 4.27865 4.35261 4.37205 4.40413 4.45545 4.51611 4.57593 4.59958 4.67869 4.69872 4.81938 4.83154 4.86894 4.91279 4.95875 5.09503 5.27472 5.29081 5.33955 5.41962 5.64473 5.89510 6.03255 6.26125 6.55800 7.04201 7.13194 7.74537 8.13100 9.12812 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.003675 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.209013 B = 7616.626918 C = 8596.403449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.041 3.959 4 C 0.149 3.851 5 N -0.601 5.601 6 C -0.222 4.222 7 H 0.028 0.972 8 C -0.022 4.022 9 N -0.960 5.960 10 Si 0.943 3.057 11 H -0.272 1.272 12 H -0.321 1.321 13 H -0.256 1.256 14 C 0.104 3.896 15 C 0.113 3.887 16 H 0.062 0.938 17 O -0.557 6.557 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.131 4.131 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.045 4.045 24 Cl -0.073 7.073 25 C -0.102 4.102 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.378 0.622 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 18.976 -1.648 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.038 4.038 4 C 0.024 3.976 5 N -0.323 5.323 6 C -0.352 4.352 7 H 0.046 0.954 8 C -0.217 4.217 9 N -0.606 5.606 10 Si 0.773 3.227 11 H -0.199 1.199 12 H -0.251 1.251 13 H -0.181 1.181 14 C -0.021 4.021 15 C 0.051 3.949 16 H 0.080 0.920 17 O -0.363 6.363 18 C -0.148 4.148 19 C -0.065 4.065 20 C -0.149 4.149 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.071 4.071 24 Cl -0.045 7.045 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.227 0.773 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.145 0.855 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.887 18.370 -1.509 19.069 hybrid contribution -1.158 0.076 -0.736 1.375 sum 3.729 18.446 -2.245 18.952 Atomic orbital electron populations 1.22810 0.81593 1.02588 1.00071 1.88129 1.19672 1.29125 1.95211 1.23408 0.96920 0.84161 0.99277 1.21195 0.90150 0.98204 0.88053 1.43968 1.76431 1.01743 1.10139 1.18448 1.34745 0.82872 0.99147 0.95437 1.25947 0.99560 0.95725 1.00458 1.70010 1.46235 1.17567 1.26800 0.85880 0.80625 0.77416 0.78809 1.19938 1.25064 1.18054 1.21970 0.95189 0.94600 0.90345 1.22243 0.96934 0.92043 0.83666 0.92032 1.86627 1.66362 1.42577 1.40767 1.21354 0.92439 1.01536 0.99447 1.19806 0.95977 0.94083 0.96601 1.21444 0.93745 0.99776 0.99956 1.21348 0.96128 0.96381 0.98768 1.21264 1.00009 0.94754 0.98253 1.21051 0.94773 0.90764 1.00536 1.98354 1.91716 1.36201 1.78181 1.21002 0.94451 0.97299 0.99300 0.94820 0.90326 0.92328 0.91721 0.94510 0.94656 0.88276 0.93356 0.91010 0.93988 0.77336 0.87901 0.90113 0.85498 0.83074 0.83459 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.62 10.18 -148.98 -1.52 -18.13 16 3 C 0.04 1.39 6.28 71.98 0.45 1.84 16 4 C 0.15 5.54 5.84 86.38 0.50 6.05 16 5 N -0.60 -26.92 2.03 -702.01 -1.43 -28.34 16 6 C -0.22 -12.65 9.43 84.03 0.79 -11.86 16 7 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 8 C -0.02 -1.32 5.28 84.86 0.45 -0.87 16 9 N -0.96 -61.17 13.97 21.65 0.30 -60.87 16 10 Si 0.94 46.20 24.98 68.60 1.71 47.92 16 11 H -0.27 -12.24 6.69 99.48 0.67 -11.58 16 12 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16 13 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 14 C 0.10 3.90 4.05 86.38 0.35 4.25 16 15 C 0.11 3.67 3.23 30.60 0.10 3.77 16 16 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 17 O -0.56 -16.26 11.15 -148.98 -1.66 -17.92 16 18 C -0.11 -2.73 5.03 29.85 0.15 -2.58 16 19 C -0.06 -1.61 4.97 -19.87 -0.10 -1.71 16 20 C -0.13 -3.27 9.70 22.27 0.22 -3.06 16 21 C -0.11 -2.31 10.04 22.26 0.22 -2.09 16 22 C -0.12 -2.59 9.83 22.29 0.22 -2.37 16 23 C -0.04 -1.01 6.32 22.32 0.14 -0.87 16 24 Cl -0.07 -1.50 28.96 -2.72 -0.08 -1.58 16 25 C -0.10 -2.35 9.17 22.29 0.20 -2.15 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 32 H 0.10 2.90 6.35 -2.39 -0.02 2.89 16 33 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 34 H 0.07 2.18 8.11 -2.39 -0.02 2.17 16 35 H 0.04 1.79 3.48 -2.39 -0.01 1.78 16 36 H 0.38 7.42 8.68 -74.06 -0.64 6.78 16 37 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 38 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 39 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -73.07 360.65 2.61 -70.46 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.33 Total: 18.05 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.95 Total: -9.58 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -1.12 Total: -89.21 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -3.18 Total: -36.05 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.71 Total: 47.92 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -73.07 2.61 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459539141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.075 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds