Wall clock time and date at job start Tue Mar 31 2020 10:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46885 * 2 1 4 4 O 1.42904 * 109.46906 * 119.99648 * 2 1 3 5 5 C 1.35918 * 116.99809 * 277.65160 * 4 2 1 6 6 C 1.39137 * 120.47167 * 357.03493 * 5 4 2 7 7 C 1.38538 * 118.37140 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.22081 * 359.97312 * 7 6 5 9 9 N 1.31841 * 120.88536 * 0.02803 * 8 7 6 10 10 C 1.31843 * 121.78261 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47187 * 239.99548 * 2 1 3 12 12 O 1.21277 * 120.00026 * 245.00262 * 11 2 1 13 13 N 1.34776 * 120.00155 * 65.00136 * 11 2 1 14 14 C 1.39471 * 120.00119 * 184.62464 * 13 11 2 15 15 C 1.38592 * 119.57904 * 174.55700 * 14 13 11 16 16 C 1.40812 * 118.79433 * 179.77943 * 15 14 13 17 17 C 1.41545 * 120.99784 * 180.26028 * 16 15 14 18 18 H 1.08001 * 120.00367 * 209.80547 * 17 16 15 19 19 C 1.40030 * 119.99838 * 29.80393 * 17 16 15 20 20 N 1.30743 * 120.00080 * 7.83036 * 19 17 16 21 21 Si 1.86800 * 120.00301 * 187.82554 * 19 17 16 22 22 H 1.48504 * 109.47173 * 89.99880 * 21 19 17 23 23 H 1.48493 * 109.47341 * 210.00117 * 21 19 17 24 24 H 1.48502 * 109.46964 * 330.00389 * 21 19 17 25 25 C 1.41170 * 118.00695 * 0.49000 * 16 15 14 26 26 C 1.37587 * 119.01754 * 359.74903 * 25 16 15 27 27 N 1.32079 * 121.10615 * 0.02562 * 26 25 16 28 28 H 1.08995 * 109.47019 * 300.00958 * 1 2 3 29 29 H 1.09000 * 109.46874 * 60.00508 * 1 2 3 30 30 H 1.08990 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.81764 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.39127 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.55259 * 180.02562 * 8 7 6 34 34 H 1.07996 * 119.65649 * 180.02562 * 10 9 8 35 35 H 0.96997 * 119.99894 * 4.62600 * 13 11 2 36 36 H 1.08001 * 120.60861 * 0.02562 * 15 14 13 37 37 H 0.96998 * 120.00101 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.49536 * 179.77641 * 25 16 15 39 39 H 1.07999 * 119.44673 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0600 0.0482 2.3173 6 6 1.7219 1.3979 2.3199 7 6 1.7925 2.0919 3.5168 8 6 2.1928 1.4262 4.6604 9 7 2.5065 0.1461 4.6236 10 6 2.4526 -0.5502 3.5054 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7467 -1.1213 13 7 1.7920 -0.1943 -2.4519 14 6 2.1718 -0.8993 -3.5939 15 6 1.8205 -0.4162 -4.8445 16 6 2.2165 -1.1386 -5.9864 17 6 1.8877 -0.6850 -7.2863 18 1 1.7453 -1.3961 -8.0865 19 6 1.7469 0.6859 -7.5347 20 7 2.0670 1.5539 -6.6108 21 14 1.1019 1.2746 -9.1860 22 1 -0.3778 1.3860 -9.1283 23 1 1.6864 2.6030 -9.5007 24 1 1.4844 0.3028 -10.2417 25 6 2.9471 -2.3314 -5.7959 26 6 3.2449 -2.7342 -4.5144 27 7 2.8586 -2.0251 -3.4692 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4128 1.8925 1.4110 32 1 1.5378 3.1408 3.5560 33 1 2.2494 1.9620 5.5965 34 1 2.7168 -1.5973 3.5146 35 1 1.3549 0.6674 -2.5369 36 1 1.2566 0.4998 -4.9416 37 1 1.9691 2.5035 -6.7827 38 1 3.2679 -2.9189 -6.6434 39 1 3.8038 -3.6454 -4.3607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:40 Heat of formation + Delta-G solvation = 8.046042 kcal Electronic energy + Delta-G solvation = -24550.138518 eV Core-core repulsion = 20844.650314 eV Total energy + Delta-G solvation = -3705.488204 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.00698 -39.79938 -38.53837 -37.46821 -34.43280 -33.89354 -32.51112 -32.23081 -30.60580 -30.23244 -28.57996 -26.06574 -25.12294 -23.96536 -23.19976 -22.06173 -21.39881 -19.78932 -18.66118 -17.87194 -17.49031 -16.89728 -16.30191 -15.87754 -15.68254 -15.30412 -14.80177 -14.62632 -14.28610 -14.20877 -13.98336 -13.75660 -13.58131 -13.14075 -12.95612 -12.65556 -12.58079 -12.36449 -12.31866 -11.81078 -11.49386 -11.31599 -11.28311 -10.98416 -10.35862 -10.21601 -10.04456 -9.84758 -9.81651 -9.47584 -9.46291 -8.62506 -8.03452 -7.83287 -7.15495 -6.82614 -4.70036 0.89916 1.01102 2.39826 2.52866 2.72992 2.97966 3.01251 3.08204 3.29476 3.56097 3.65110 3.81115 4.26790 4.36015 4.50907 4.56025 4.60463 4.73113 4.76983 4.86720 4.99040 5.30467 5.35894 5.50802 5.57083 5.77071 5.81225 5.85263 5.88932 6.16727 6.46497 6.51412 6.70877 6.85740 7.00240 7.04244 7.26898 7.35855 7.65529 7.73870 7.83798 8.08956 8.32813 8.59651 8.67748 8.72388 9.56566 10.05278 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.002744 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.027939 B =10201.479257 C =11073.184343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.064 3.936 3 H 0.095 0.905 4 O -0.274 6.274 5 C 0.088 3.912 6 C -0.172 4.172 7 C -0.130 4.130 8 C 0.051 3.949 9 N -0.447 5.447 10 C 0.075 3.925 11 C 0.503 3.497 12 O -0.454 6.454 13 N -0.652 5.652 14 C 0.334 3.666 15 C -0.232 4.232 16 C 0.143 3.857 17 C -0.456 4.456 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.799 5.799 21 Si 0.916 3.084 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.277 4.277 26 C 0.118 3.882 27 N -0.552 5.552 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.408 0.592 36 H 0.130 0.870 37 H 0.281 0.719 38 H 0.104 0.896 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 5.987 13.275 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.113 0.887 4 O -0.185 6.185 5 C 0.040 3.960 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.106 4.106 9 N -0.156 5.156 10 C -0.084 4.084 11 C 0.285 3.715 12 O -0.322 6.322 13 N -0.300 5.300 14 C 0.110 3.890 15 C -0.257 4.257 16 C 0.135 3.865 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.740 3.260 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.301 4.301 26 C -0.037 4.037 27 N -0.271 5.271 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.243 0.757 36 H 0.148 0.852 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.712 4.540 15.048 16.151 hybrid contribution -1.003 1.962 -2.560 3.378 sum -4.715 6.502 12.489 14.849 Atomic orbital electron populations 1.22315 0.92493 1.04724 1.03705 1.22330 0.95787 0.97059 0.84423 0.88696 1.86275 1.79977 1.37734 1.14529 1.20291 0.96491 0.91124 0.88102 1.21797 1.04293 0.93627 1.00130 1.21995 0.98970 1.01239 0.92732 1.22658 0.98654 0.90728 0.98574 1.67740 1.12318 1.08343 1.27222 1.22262 0.99951 1.01001 0.85196 1.19912 0.81616 0.86473 0.83546 1.90834 1.34910 1.21342 1.85090 1.43239 1.60108 1.22685 1.03927 1.18139 0.95555 0.91101 0.84208 1.21599 1.09438 1.05265 0.89430 1.17596 0.86477 0.89373 0.93050 1.19569 1.42016 0.92075 0.95153 0.89988 1.25930 0.92533 0.96768 0.98999 1.69729 1.35171 1.03293 1.34363 0.86185 0.79655 0.78569 0.81589 1.19257 1.20203 1.18525 1.21990 1.08587 1.02693 0.96794 1.21786 0.96711 0.97074 0.88092 1.67194 1.18345 1.07625 1.33935 0.91028 0.89832 0.90389 0.84040 0.84482 0.82591 0.81730 0.75656 0.85194 0.90813 0.87766 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.20 37.16 0.34 -1.44 16 2 C 0.06 0.84 2.67 -27.88 -0.07 0.76 16 3 H 0.10 0.97 6.11 -51.93 -0.32 0.65 16 4 O -0.27 -4.01 9.36 -39.34 -0.37 -4.38 16 5 C 0.09 1.09 6.55 -39.08 -0.26 0.83 16 6 C -0.17 -1.68 8.38 -39.14 -0.33 -2.00 16 7 C -0.13 -1.08 10.11 -39.46 -0.40 -1.47 16 8 C 0.05 0.47 11.18 -17.54 -0.20 0.28 16 9 N -0.45 -5.32 10.35 -13.13 -0.14 -5.45 16 10 C 0.07 0.91 11.14 -17.38 -0.19 0.72 16 11 C 0.50 9.19 7.14 -10.99 -0.08 9.11 16 12 O -0.45 -10.55 14.76 -14.30 -0.21 -10.76 16 13 N -0.65 -11.99 5.35 -11.49 -0.06 -12.05 16 14 C 0.33 7.81 7.42 -154.70 -1.15 6.66 16 15 C -0.23 -5.64 8.58 -38.48 -0.33 -5.97 16 16 C 0.14 3.66 5.57 -106.55 -0.59 3.07 16 17 C -0.46 -11.40 9.12 -37.65 -0.34 -11.75 16 18 H 0.08 1.97 7.86 -52.49 -0.41 1.55 16 19 C 0.08 1.77 5.32 -17.34 -0.09 1.68 16 20 N -0.80 -19.07 10.83 55.55 0.60 -18.47 16 21 Si 0.92 17.51 29.57 -169.99 -5.03 12.49 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 C -0.28 -6.63 9.90 -38.71 -0.38 -7.01 16 26 C 0.12 2.77 11.15 -17.68 -0.20 2.57 16 27 N -0.55 -13.83 7.85 -12.52 -0.10 -13.93 16 28 H 0.07 0.60 7.23 -51.93 -0.38 0.22 16 29 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.09 5.81 -52.49 -0.30 0.79 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.41 5.88 8.64 -40.82 -0.35 5.53 16 36 H 0.13 3.11 6.31 -52.49 -0.33 2.78 16 37 H 0.28 6.08 8.29 -40.82 -0.34 5.74 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.45 339.58 -8.64 -41.09 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.18 Total: 10.32 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.27 Total: -3.98 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.31 Total: -49.90 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.58 Total: -15.14 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.45 -8.64 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.132 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds