Wall clock time and date at job start Tue Mar 31 2020 10:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46885 * 2 1 4 4 O 1.42904 * 109.46906 * 119.99648 * 2 1 3 5 5 C 1.35918 * 116.99809 * 277.65160 * 4 2 1 6 6 C 1.39137 * 120.47167 * 357.03493 * 5 4 2 7 7 C 1.38538 * 118.37140 * 180.02562 * 6 5 4 8 8 C 1.38257 * 119.22081 * 359.97312 * 7 6 5 9 9 N 1.31841 * 120.88536 * 0.02803 * 8 7 6 10 10 C 1.31843 * 121.78261 * 359.97438 * 9 8 7 11 11 C 1.50693 * 109.47187 * 239.99548 * 2 1 3 12 12 O 1.21277 * 120.00026 * 245.00262 * 11 2 1 13 13 N 1.34776 * 120.00155 * 65.00136 * 11 2 1 14 14 C 1.39471 * 120.00119 * 184.62464 * 13 11 2 15 15 C 1.38592 * 119.57904 * 174.55700 * 14 13 11 16 16 C 1.40812 * 118.79433 * 179.77943 * 15 14 13 17 17 C 1.41545 * 120.99784 * 180.26028 * 16 15 14 18 18 H 1.08001 * 120.00367 * 209.80547 * 17 16 15 19 19 C 1.40030 * 119.99838 * 29.80393 * 17 16 15 20 20 N 1.30743 * 120.00080 * 7.83036 * 19 17 16 21 21 Si 1.86800 * 120.00301 * 187.82554 * 19 17 16 22 22 H 1.48504 * 109.47173 * 89.99880 * 21 19 17 23 23 H 1.48493 * 109.47341 * 210.00117 * 21 19 17 24 24 H 1.48502 * 109.46964 * 330.00389 * 21 19 17 25 25 C 1.41170 * 118.00695 * 0.49000 * 16 15 14 26 26 C 1.37587 * 119.01754 * 359.74903 * 25 16 15 27 27 N 1.32079 * 121.10615 * 0.02562 * 26 25 16 28 28 H 1.08995 * 109.47019 * 300.00958 * 1 2 3 29 29 H 1.09000 * 109.46874 * 60.00508 * 1 2 3 30 30 H 1.08990 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.81764 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.39127 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.55259 * 180.02562 * 8 7 6 34 34 H 1.07996 * 119.65649 * 180.02562 * 10 9 8 35 35 H 0.96997 * 119.99894 * 4.62600 * 13 11 2 36 36 H 1.08001 * 120.60861 * 0.02562 * 15 14 13 37 37 H 0.96998 * 120.00101 * 180.02562 * 20 19 17 38 38 H 1.08000 * 120.49536 * 179.77641 * 25 16 15 39 39 H 1.07999 * 119.44673 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0600 0.0482 2.3173 6 6 1.7219 1.3979 2.3199 7 6 1.7925 2.0919 3.5168 8 6 2.1928 1.4262 4.6604 9 7 2.5065 0.1461 4.6236 10 6 2.4526 -0.5502 3.5054 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7467 -1.1213 13 7 1.7920 -0.1943 -2.4519 14 6 2.1718 -0.8993 -3.5939 15 6 1.8205 -0.4162 -4.8445 16 6 2.2165 -1.1386 -5.9864 17 6 1.8877 -0.6850 -7.2863 18 1 1.7453 -1.3961 -8.0865 19 6 1.7469 0.6859 -7.5347 20 7 2.0670 1.5539 -6.6108 21 14 1.1019 1.2746 -9.1860 22 1 -0.3778 1.3860 -9.1283 23 1 1.6864 2.6030 -9.5007 24 1 1.4844 0.3028 -10.2417 25 6 2.9471 -2.3314 -5.7959 26 6 3.2449 -2.7342 -4.5144 27 7 2.8586 -2.0251 -3.4692 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4128 1.8925 1.4110 32 1 1.5378 3.1408 3.5560 33 1 2.2494 1.9620 5.5965 34 1 2.7168 -1.5973 3.5146 35 1 1.3549 0.6674 -2.5369 36 1 1.2566 0.4998 -4.9416 37 1 1.9691 2.5035 -6.7827 38 1 3.2679 -2.9189 -6.6434 39 1 3.8038 -3.6454 -4.3607 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:40 Heat of formation + Delta-G solvation = -11.883968 kcal Electronic energy + Delta-G solvation = -24551.002748 eV Core-core repulsion = 20844.650314 eV Total energy + Delta-G solvation = -3706.352434 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99380 -41.16985 -39.89963 -38.83846 -36.15153 -35.60136 -33.41760 -33.14214 -32.43527 -31.11162 -30.22576 -27.91965 -26.13819 -24.85977 -24.18706 -23.86216 -22.85331 -21.29953 -19.69971 -19.36327 -18.89124 -17.71717 -17.49368 -17.26091 -16.95051 -16.85116 -16.10763 -16.08700 -15.75127 -15.50807 -15.20532 -14.80129 -14.70310 -14.55221 -14.33617 -14.10572 -13.95579 -13.37787 -13.18654 -13.14348 -12.88193 -12.73290 -12.67856 -12.30636 -12.11763 -11.88614 -11.54124 -11.20055 -11.03405 -10.74900 -10.58441 -9.92021 -9.66322 -9.46283 -8.93121 -8.59844 -6.58714 0.14631 0.23752 0.66905 0.97952 1.40608 1.42904 1.51472 1.55144 1.73274 2.21521 2.42703 2.79916 2.81575 3.32132 3.54127 3.57735 3.68439 3.75081 3.79751 3.91944 4.14887 4.15107 4.31978 4.55948 4.59306 4.70274 4.77409 4.79551 4.89160 5.01564 5.05287 5.07259 5.10318 5.23376 5.43753 5.44538 5.57593 5.90304 6.06238 6.18270 6.42981 6.52860 6.76734 6.83720 6.96398 7.16715 7.77351 8.30787 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.002744 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.027939 B =10201.479257 C =11073.184343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.076 3.924 3 H 0.130 0.870 4 O -0.306 6.306 5 C 0.067 3.933 6 C -0.169 4.169 7 C -0.118 4.118 8 C 0.047 3.953 9 N -0.472 5.472 10 C 0.052 3.948 11 C 0.499 3.501 12 O -0.511 6.511 13 N -0.641 5.641 14 C 0.332 3.668 15 C -0.245 4.245 16 C 0.114 3.886 17 C -0.485 4.485 18 H 0.082 0.918 19 C 0.038 3.962 20 N -0.820 5.820 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.291 4.291 26 C 0.110 3.890 27 N -0.580 5.580 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.166 0.834 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.157 0.843 35 H 0.427 0.573 36 H 0.131 0.869 37 H 0.292 0.708 38 H 0.117 0.883 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 9.023 13.551 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.017 3.983 3 H 0.147 0.853 4 O -0.218 6.218 5 C 0.019 3.981 6 C -0.195 4.195 7 C -0.138 4.138 8 C -0.110 4.110 9 N -0.181 5.181 10 C -0.106 4.106 11 C 0.284 3.716 12 O -0.383 6.383 13 N -0.290 5.290 14 C 0.106 3.894 15 C -0.271 4.271 16 C 0.105 3.895 17 C -0.516 4.516 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.446 5.446 21 Si 0.810 3.190 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.314 4.314 26 C -0.043 4.043 27 N -0.300 5.300 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.184 0.816 32 H 0.195 0.805 33 H 0.203 0.797 34 H 0.174 0.826 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.006 7.598 15.351 17.845 hybrid contribution -0.571 1.082 -2.530 2.810 sum -5.576 8.679 12.821 16.456 Atomic orbital electron populations 1.22332 0.90093 1.04220 1.05940 1.22291 0.97234 0.97218 0.81605 0.85251 1.86223 1.80901 1.39205 1.15469 1.20388 0.98193 0.92376 0.87114 1.22128 1.03220 0.92396 1.01783 1.22425 0.97009 1.02859 0.91468 1.23296 0.97254 0.89987 1.00441 1.67747 1.13398 1.09866 1.27122 1.22243 1.01251 1.01190 0.85891 1.20917 0.80111 0.85878 0.84688 1.90801 1.37443 1.24007 1.85999 1.43203 1.59657 1.23089 1.03054 1.18390 0.94620 0.90782 0.85622 1.21590 1.10270 1.05485 0.89716 1.18034 0.87126 0.90310 0.93992 1.19835 1.43359 0.93304 0.95120 0.89949 1.26761 0.92064 0.96205 1.02752 1.69758 1.34643 1.04061 1.36137 0.85086 0.79208 0.78065 0.76672 1.18387 1.19260 1.18566 1.22165 1.08969 1.02825 0.97456 1.22203 0.96494 0.97722 0.87902 1.67325 1.19430 1.08630 1.34568 0.88371 0.87891 0.92338 0.81630 0.80540 0.79676 0.82586 0.73437 0.85178 0.89753 0.86499 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.20 71.98 0.66 -2.40 16 2 C 0.08 1.87 2.67 29.85 0.08 1.95 16 3 H 0.13 2.24 6.11 -2.39 -0.01 2.22 16 4 O -0.31 -8.94 9.36 -73.63 -0.69 -9.62 16 5 C 0.07 1.59 6.55 22.60 0.15 1.74 16 6 C -0.17 -2.75 8.38 22.56 0.19 -2.56 16 7 C -0.12 -1.49 10.11 22.35 0.23 -1.26 16 8 C 0.05 0.76 11.18 84.70 0.95 1.70 16 9 N -0.47 -10.87 10.35 -195.45 -2.02 -12.90 16 10 C 0.05 1.28 11.14 84.80 0.94 2.23 16 11 C 0.50 18.30 7.14 87.65 0.63 18.92 16 12 O -0.51 -24.56 14.76 15.97 0.24 -24.33 16 13 N -0.64 -23.44 5.35 -308.67 -1.65 -25.09 16 14 C 0.33 15.76 7.42 132.75 0.98 16.75 16 15 C -0.25 -12.14 8.58 22.98 0.20 -11.94 16 16 C 0.11 5.93 5.57 -21.11 -0.12 5.81 16 17 C -0.49 -24.48 9.12 23.52 0.21 -24.26 16 18 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 19 C 0.04 1.77 5.32 85.29 0.45 2.22 16 20 N -0.82 -38.65 10.83 21.84 0.24 -38.42 16 21 Si 0.99 34.93 29.57 68.60 2.03 36.95 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 23 H -0.27 -9.02 7.11 99.48 0.71 -8.32 16 24 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 25 C -0.29 -14.24 9.90 22.84 0.23 -14.01 16 26 C 0.11 5.33 11.15 84.50 0.94 6.27 16 27 N -0.58 -29.80 7.85 -193.54 -1.52 -31.32 16 28 H 0.10 1.30 7.23 -2.39 -0.02 1.28 16 29 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.17 1.79 5.81 -2.91 -0.02 1.77 16 32 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.43 11.78 8.64 -92.71 -0.80 10.98 16 36 H 0.13 6.29 6.31 -2.91 -0.02 6.27 16 37 H 0.29 12.25 8.29 -92.71 -0.77 11.48 16 38 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 39 H 0.15 6.19 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -73.72 339.58 3.64 -70.08 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.30 Total: 33.52 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.72 Total: 1.13 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.96 Total: -107.73 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.45 Total: -33.95 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.95 kcal Total: -73.72 3.64 -70.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.192 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds