Wall clock time and date at job start Tue Mar 31 2020 10:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47494 * 2 1 4 4 N 1.28386 * 119.09983 * 273.25786 * 3 2 1 5 5 C 1.31495 * 122.24810 * 180.29414 * 4 3 2 6 6 C 1.47701 * 119.89752 * 179.70264 * 5 4 3 7 7 O 1.21597 * 119.99652 * 174.58999 * 6 5 4 8 8 N 1.34776 * 120.00468 * 354.86083 * 6 5 4 9 9 C 1.36897 * 119.99485 * 5.78228 * 8 6 5 10 10 H 1.07994 * 120.00531 * 297.54062 * 9 8 6 11 11 C 1.38995 * 119.99814 * 117.54444 * 9 8 6 12 12 N 1.31367 * 120.00016 * 184.11294 * 11 9 8 13 13 Si 1.86800 * 120.00150 * 4.11822 * 11 9 8 14 14 H 1.48503 * 109.47369 * 95.17472 * 13 11 9 15 15 H 1.48500 * 109.47194 * 215.17802 * 13 11 9 16 16 H 1.48503 * 109.47197 * 335.17861 * 13 11 9 17 17 C 1.39698 * 120.00390 * 185.78155 * 8 6 5 18 18 C 1.38985 * 120.07799 * 7.73545 * 17 8 6 19 19 C 1.38087 * 119.91722 * 179.74303 * 18 17 8 20 20 C 1.38310 * 120.07907 * 0.53253 * 19 18 17 21 21 C 1.38317 * 120.15878 * 359.72385 * 20 19 18 22 22 C 1.38071 * 120.08114 * 0.02562 * 21 20 19 23 23 C 1.41648 * 120.19819 * 359.43189 * 5 4 3 24 24 C 1.36294 * 118.23443 * 0.26985 * 23 5 4 25 25 C 1.34606 * 119.09475 * 92.98040 * 3 2 1 26 26 O 1.21979 * 120.21821 * 359.97438 * 25 3 2 27 27 H 1.08992 * 109.47495 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47019 * 299.99843 * 1 2 3 29 29 H 1.08996 * 109.47080 * 59.99139 * 1 2 3 30 30 H 1.08999 * 109.46582 * 240.00241 * 2 1 3 31 31 H 1.08996 * 109.47080 * 120.00861 * 2 1 3 32 32 H 0.96997 * 119.99964 * 184.99607 * 12 11 9 33 33 H 1.07996 * 120.04301 * 0.02562 * 18 17 8 34 34 H 1.07992 * 119.95832 * 180.25368 * 19 18 17 35 35 H 1.08000 * 119.91792 * 179.69742 * 20 19 18 36 36 H 1.08007 * 119.95388 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.04004 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.88376 * 180.29277 * 23 5 4 39 39 H 1.08001 * 121.02847 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1665 1.9911 -1.1200 5 6 2.6057 3.2284 -1.1924 6 6 2.7627 3.8780 -2.5096 7 8 3.0738 5.0516 -2.5754 8 7 2.5556 3.1714 -3.6385 9 6 2.0859 1.8876 -3.5659 10 1 2.6703 1.1259 -3.0715 11 6 0.8567 1.5646 -4.1286 12 7 0.3686 0.3529 -3.9892 13 14 -0.1012 2.8532 -5.0832 14 1 0.1943 2.7171 -6.5322 15 1 -1.5556 2.6593 -4.8543 16 1 0.2962 4.2077 -4.6222 17 6 2.8204 3.7491 -4.8826 18 6 3.4462 4.9878 -4.9564 19 6 3.7111 5.5533 -6.1880 20 6 3.3445 4.8935 -7.3470 21 6 2.7168 3.6630 -7.2772 22 6 2.4534 3.0891 -6.0493 23 6 2.9234 3.9420 -0.0108 24 6 2.7659 3.3097 1.1863 25 6 2.2943 1.9778 1.1746 26 8 2.1377 1.3729 2.2222 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 -0.4530 0.1060 -4.4418 33 1 3.7291 5.5054 -4.0518 34 1 4.2011 6.5139 -6.2462 35 1 3.5486 5.3405 -8.3088 36 1 2.4316 3.1509 -8.1844 37 1 1.9628 2.1285 -5.9956 38 1 3.2805 4.9602 -0.0571 39 1 2.9942 3.8113 2.1151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609502852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:00 Heat of formation + Delta-G solvation = 67.382201 kcal Electronic energy + Delta-G solvation = -26539.165414 eV Core-core repulsion = 22836.250220 eV Total energy + Delta-G solvation = -3702.915195 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67286 -40.13732 -37.86951 -37.12465 -35.37463 -34.91547 -32.30458 -31.58212 -30.53575 -30.27109 -28.84248 -25.76866 -25.20578 -24.24676 -22.71166 -21.82774 -21.56259 -20.13240 -18.64167 -17.99102 -17.01115 -16.31264 -16.20649 -15.93768 -15.75260 -15.50655 -14.69761 -14.37776 -13.93020 -13.83386 -13.54665 -13.24309 -13.16792 -12.99240 -12.86512 -12.69913 -12.57806 -12.27202 -11.95096 -11.71575 -11.42131 -11.16473 -11.13177 -10.82837 -10.64622 -10.25361 -10.11691 -10.07096 -9.57230 -9.15399 -9.05030 -8.76537 -8.17549 -8.14001 -7.11222 -6.54623 -4.53536 0.92020 1.46272 2.03060 2.12710 2.59171 3.07180 3.19220 3.28336 3.34446 3.80630 4.01283 4.03275 4.43248 4.56547 4.76754 5.02496 5.08509 5.27006 5.41045 5.42202 5.51934 5.58857 5.61628 5.78878 5.85565 5.98277 6.09630 6.13640 6.16665 6.25400 6.31405 6.40530 6.45311 6.55447 6.69486 7.06151 7.11494 7.17820 7.26699 7.64382 7.87713 7.91191 8.17724 8.51060 8.71078 8.94539 9.21088 10.43991 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.005846 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.660883 B = 4788.178268 C = 6009.604547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.339 5.339 4 N -0.093 5.093 5 C 0.000 4.000 6 C 0.564 3.436 7 O -0.552 6.552 8 N -0.393 5.393 9 C -0.337 4.337 10 H 0.120 0.880 11 C 0.085 3.915 12 N -0.847 5.847 13 Si 0.867 3.133 14 H -0.259 1.259 15 H -0.292 1.292 16 H -0.260 1.260 17 C 0.161 3.839 18 C -0.175 4.175 19 C -0.107 4.107 20 C -0.166 4.166 21 C -0.104 4.104 22 C -0.161 4.161 23 C -0.021 4.021 24 C -0.219 4.219 25 C 0.473 3.527 26 O -0.548 6.548 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.277 0.723 33 H 0.173 0.827 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 2.695 1.119 3.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 N -0.160 5.160 4 N 0.077 4.923 5 C -0.169 4.169 6 C 0.355 3.645 7 O -0.434 6.434 8 N -0.102 5.102 9 C -0.465 4.465 10 H 0.137 0.863 11 C -0.126 4.126 12 N -0.481 5.481 13 Si 0.694 3.306 14 H -0.184 1.184 15 H -0.219 1.219 16 H -0.184 1.184 17 C 0.066 3.934 18 C -0.195 4.195 19 C -0.126 4.126 20 C -0.185 4.185 21 C -0.123 4.123 22 C -0.182 4.182 23 C -0.045 4.045 24 C -0.249 4.249 25 C 0.273 3.727 26 O -0.429 6.429 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.159 0.841 38 H 0.173 0.827 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.080 2.007 1.316 3.176 hybrid contribution -0.502 0.990 -0.115 1.115 sum 1.578 2.996 1.201 3.593 Atomic orbital electron populations 1.22032 0.93865 1.03133 1.02891 1.21957 0.96145 0.77609 1.05006 1.47604 1.50070 1.15051 1.03275 1.73011 1.02360 1.08854 1.08045 1.21590 1.08511 0.91513 0.95251 1.17975 0.79146 0.84545 0.82856 1.90413 1.51638 1.15491 1.85836 1.41206 1.53759 1.13693 1.01518 1.19096 1.02794 0.83507 1.41106 0.86294 1.25475 0.95198 0.96208 0.95674 1.69589 1.21048 1.18623 1.38795 0.87148 0.78748 0.83191 0.81503 1.18391 1.21921 1.18372 1.18460 0.95206 0.93336 0.86408 1.22482 1.00677 0.95909 1.00441 1.21003 0.99912 0.99297 0.92403 1.20949 1.03299 0.96430 0.97840 1.20833 0.99062 0.95628 0.96766 1.21164 1.03508 1.02237 0.91245 1.22231 0.90597 1.00955 0.90726 1.22477 1.07835 0.94689 0.99876 1.18229 0.80831 0.89105 0.84506 1.90890 1.55418 1.66446 1.30127 0.90681 0.93026 0.90471 0.87268 0.88472 0.91205 0.81049 0.86775 0.87196 0.86741 0.84089 0.82723 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.11 1.82 6.32 -4.04 -0.03 1.79 16 3 N -0.34 -6.20 3.22 -63.33 -0.20 -6.41 16 4 N -0.09 -1.85 7.29 33.40 0.24 -1.61 16 5 C 0.00 -0.01 6.75 -82.85 -0.56 -0.57 16 6 C 0.56 12.20 7.51 -12.40 -0.09 12.10 16 7 O -0.55 -11.92 12.90 5.28 0.07 -11.85 16 8 N -0.39 -8.97 2.14 -60.02 -0.13 -9.10 16 9 C -0.34 -7.94 6.70 -15.01 -0.10 -8.04 16 10 H 0.12 2.96 7.07 -52.49 -0.37 2.59 16 11 C 0.08 2.03 4.67 -17.47 -0.08 1.94 16 12 N -0.85 -20.56 13.95 55.50 0.77 -19.79 16 13 Si 0.87 19.87 23.57 -169.99 -4.01 15.87 16 14 H -0.26 -5.64 6.20 56.52 0.35 -5.29 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.26 -6.36 6.63 56.52 0.37 -5.99 16 17 C 0.16 3.57 4.91 -83.72 -0.41 3.16 16 18 C -0.18 -3.57 8.97 -39.36 -0.35 -3.92 16 19 C -0.11 -1.87 10.04 -39.61 -0.40 -2.27 16 20 C -0.17 -2.77 10.04 -39.53 -0.40 -3.17 16 21 C -0.10 -1.90 10.00 -39.61 -0.40 -2.30 16 22 C -0.16 -3.42 5.68 -39.37 -0.22 -3.64 16 23 C -0.02 -0.33 9.67 -38.98 -0.38 -0.71 16 24 C -0.22 -3.39 10.11 -39.12 -0.40 -3.78 16 25 C 0.47 8.56 7.47 -15.17 -0.11 8.45 16 26 O -0.55 -10.87 16.57 4.94 0.08 -10.79 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.10 1.44 7.27 -51.93 -0.38 1.06 16 32 H 0.28 6.42 8.31 -40.82 -0.34 6.09 16 33 H 0.17 3.55 4.72 -55.18 -0.26 3.29 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 37 H 0.14 3.14 4.43 -52.48 -0.23 2.91 16 38 H 0.16 2.10 7.73 -52.49 -0.41 1.70 16 39 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -27.32 322.99 -6.09 -33.41 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.24 Total: 8.48 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.54 Total: -3.08 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.69 Total: -36.90 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.15 Total: -22.64 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.01 Total: 15.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.32 -6.09 -33.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609502852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.792 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds