Wall clock time and date at job start Tue Mar 31 2020 10:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47494 * 2 1 4 4 N 1.28386 * 119.09983 * 273.25786 * 3 2 1 5 5 C 1.31495 * 122.24810 * 180.29414 * 4 3 2 6 6 C 1.47701 * 119.89752 * 179.70264 * 5 4 3 7 7 O 1.21597 * 119.99652 * 174.58999 * 6 5 4 8 8 N 1.34776 * 120.00468 * 354.86083 * 6 5 4 9 9 C 1.36897 * 119.99485 * 5.78228 * 8 6 5 10 10 H 1.07994 * 120.00531 * 297.54062 * 9 8 6 11 11 C 1.38995 * 119.99814 * 117.54444 * 9 8 6 12 12 N 1.31367 * 120.00016 * 184.11294 * 11 9 8 13 13 Si 1.86800 * 120.00150 * 4.11822 * 11 9 8 14 14 H 1.48503 * 109.47369 * 95.17472 * 13 11 9 15 15 H 1.48500 * 109.47194 * 215.17802 * 13 11 9 16 16 H 1.48503 * 109.47197 * 335.17861 * 13 11 9 17 17 C 1.39698 * 120.00390 * 185.78155 * 8 6 5 18 18 C 1.38985 * 120.07799 * 7.73545 * 17 8 6 19 19 C 1.38087 * 119.91722 * 179.74303 * 18 17 8 20 20 C 1.38310 * 120.07907 * 0.53253 * 19 18 17 21 21 C 1.38317 * 120.15878 * 359.72385 * 20 19 18 22 22 C 1.38071 * 120.08114 * 0.02562 * 21 20 19 23 23 C 1.41648 * 120.19819 * 359.43189 * 5 4 3 24 24 C 1.36294 * 118.23443 * 0.26985 * 23 5 4 25 25 C 1.34606 * 119.09475 * 92.98040 * 3 2 1 26 26 O 1.21979 * 120.21821 * 359.97438 * 25 3 2 27 27 H 1.08992 * 109.47495 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47019 * 299.99843 * 1 2 3 29 29 H 1.08996 * 109.47080 * 59.99139 * 1 2 3 30 30 H 1.08999 * 109.46582 * 240.00241 * 2 1 3 31 31 H 1.08996 * 109.47080 * 120.00861 * 2 1 3 32 32 H 0.96997 * 119.99964 * 184.99607 * 12 11 9 33 33 H 1.07996 * 120.04301 * 0.02562 * 18 17 8 34 34 H 1.07992 * 119.95832 * 180.25368 * 19 18 17 35 35 H 1.08000 * 119.91792 * 179.69742 * 20 19 18 36 36 H 1.08007 * 119.95388 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.04004 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.88376 * 180.29277 * 23 5 4 39 39 H 1.08001 * 121.02847 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1665 1.9911 -1.1200 5 6 2.6057 3.2284 -1.1924 6 6 2.7627 3.8780 -2.5096 7 8 3.0738 5.0516 -2.5754 8 7 2.5556 3.1714 -3.6385 9 6 2.0859 1.8876 -3.5659 10 1 2.6703 1.1259 -3.0715 11 6 0.8567 1.5646 -4.1286 12 7 0.3686 0.3529 -3.9892 13 14 -0.1012 2.8532 -5.0832 14 1 0.1943 2.7171 -6.5322 15 1 -1.5556 2.6593 -4.8543 16 1 0.2962 4.2077 -4.6222 17 6 2.8204 3.7491 -4.8826 18 6 3.4462 4.9878 -4.9564 19 6 3.7111 5.5533 -6.1880 20 6 3.3445 4.8935 -7.3470 21 6 2.7168 3.6630 -7.2772 22 6 2.4534 3.0891 -6.0493 23 6 2.9234 3.9420 -0.0108 24 6 2.7659 3.3097 1.1863 25 6 2.2943 1.9778 1.1746 26 8 2.1377 1.3729 2.2222 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 -0.4530 0.1060 -4.4418 33 1 3.7291 5.5054 -4.0518 34 1 4.2011 6.5139 -6.2462 35 1 3.5486 5.3405 -8.3088 36 1 2.4316 3.1509 -8.1844 37 1 1.9628 2.1285 -5.9956 38 1 3.2805 4.9602 -0.0571 39 1 2.9942 3.8113 2.1151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609502852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:59 Heat of formation + Delta-G solvation = 51.824521 kcal Electronic energy + Delta-G solvation = -26539.840046 eV Core-core repulsion = 22836.250220 eV Total energy + Delta-G solvation = -3703.589827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12320 -41.73431 -39.36887 -38.63177 -37.00820 -36.30122 -34.10186 -32.95681 -31.96657 -31.74649 -30.33430 -27.39636 -26.75984 -25.66574 -24.13541 -23.25894 -23.04163 -21.73361 -20.34795 -19.44802 -18.45204 -17.79902 -17.70995 -17.46280 -17.33630 -17.00582 -16.29021 -16.01562 -15.50195 -15.20528 -14.93703 -14.74929 -14.69235 -14.51435 -14.36427 -14.15546 -14.11467 -13.87439 -13.34645 -13.10629 -13.08071 -12.64390 -12.63680 -12.30271 -12.12929 -12.04329 -11.69431 -11.41966 -11.19447 -10.81497 -10.67147 -10.35148 -9.65845 -9.60244 -8.75601 -8.35638 -6.37343 -0.44181 -0.01558 0.53596 0.65604 1.17387 1.26906 1.33959 1.41451 1.82032 2.16041 2.27580 2.54559 2.82298 3.04066 3.13200 3.69677 3.74653 3.82613 4.09676 4.11648 4.17389 4.21446 4.33043 4.46724 4.56267 4.62372 4.69236 4.77864 4.83174 4.88993 4.90634 4.98952 5.08309 5.21184 5.24941 5.53599 5.61966 5.70122 5.75172 5.97124 6.22979 6.38662 6.48856 6.87010 7.09972 7.21190 7.47870 8.61877 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.017241 B = 0.005846 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.660883 B = 4788.178268 C = 6009.604547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.340 5.340 4 N -0.119 5.119 5 C -0.011 4.011 6 C 0.557 3.443 7 O -0.556 6.556 8 N -0.407 5.407 9 C -0.324 4.324 10 H 0.099 0.901 11 C 0.065 3.935 12 N -0.870 5.870 13 Si 0.904 3.096 14 H -0.242 1.242 15 H -0.301 1.301 16 H -0.284 1.284 17 C 0.130 3.870 18 C -0.193 4.193 19 C -0.101 4.101 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.186 4.186 23 C -0.018 4.018 24 C -0.201 4.201 25 C 0.464 3.536 26 O -0.567 6.567 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.279 0.721 33 H 0.165 0.835 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.141 0.859 37 H 0.123 0.877 38 H 0.182 0.818 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 4.339 0.480 5.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 N -0.161 5.161 4 N 0.051 4.949 5 C -0.179 4.179 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.117 5.117 9 C -0.453 4.453 10 H 0.117 0.883 11 C -0.143 4.143 12 N -0.505 5.505 13 Si 0.732 3.268 14 H -0.166 1.166 15 H -0.229 1.229 16 H -0.209 1.209 17 C 0.035 3.965 18 C -0.212 4.212 19 C -0.120 4.120 20 C -0.172 4.172 21 C -0.125 4.125 22 C -0.206 4.206 23 C -0.041 4.041 24 C -0.230 4.230 25 C 0.265 3.735 26 O -0.450 6.450 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.199 0.801 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.868 3.648 0.640 4.685 hybrid contribution -0.643 0.535 0.069 0.839 sum 2.226 4.183 0.709 4.791 Atomic orbital electron populations 1.21936 0.93350 1.04310 1.01238 1.22090 0.96520 0.77009 1.05346 1.47671 1.49836 1.15537 1.03066 1.72865 1.03327 1.09569 1.09123 1.21657 1.08823 0.91805 0.95634 1.18237 0.78817 0.84755 0.83415 1.90394 1.51764 1.15469 1.86167 1.41298 1.54458 1.13510 1.02409 1.18786 1.02376 0.83741 1.40357 0.88331 1.25705 0.95582 0.96768 0.96252 1.69625 1.21605 1.19294 1.39989 0.86620 0.77290 0.80827 0.82034 1.16592 1.22894 1.20930 1.18763 0.96917 0.94522 0.86301 1.22548 1.01387 0.95549 1.01738 1.21434 0.98736 1.00401 0.91403 1.21423 1.00960 0.95313 0.99475 1.21231 0.98409 0.96381 0.96497 1.21180 1.04992 1.01995 0.92419 1.22365 0.90535 1.01857 0.89366 1.22791 1.05895 0.93218 1.01073 1.18661 0.80743 0.90071 0.84001 1.90880 1.56473 1.67122 1.30507 0.88162 0.92970 0.93533 0.88024 0.86884 0.91077 0.81826 0.83201 0.82869 0.84125 0.85970 0.80065 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.24 71.98 0.74 -4.00 16 2 C 0.11 3.59 6.32 86.38 0.55 4.13 16 3 N -0.34 -12.55 3.22 -472.46 -1.52 -14.07 16 4 N -0.12 -4.86 7.29 -48.24 -0.35 -5.21 16 5 C -0.01 -0.43 6.75 42.54 0.29 -0.14 16 6 C 0.56 24.45 7.51 86.74 0.65 25.11 16 7 O -0.56 -24.01 12.90 -4.02 -0.05 -24.06 16 8 N -0.41 -19.05 2.14 -462.07 -0.99 -20.04 16 9 C -0.32 -15.88 6.70 84.08 0.56 -15.32 16 10 H 0.10 5.17 7.07 -2.91 -0.02 5.15 16 11 C 0.06 3.19 4.67 84.94 0.40 3.59 16 12 N -0.87 -43.64 13.95 21.67 0.30 -43.34 16 13 Si 0.90 41.85 23.57 68.60 1.62 43.47 16 14 H -0.24 -10.33 6.20 99.48 0.62 -9.72 16 15 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.28 -14.17 6.63 99.48 0.66 -13.52 16 17 C 0.13 5.77 4.91 38.24 0.19 5.96 16 18 C -0.19 -7.66 8.97 22.41 0.20 -7.46 16 19 C -0.10 -3.21 10.04 22.25 0.22 -2.98 16 20 C -0.15 -4.48 10.04 22.31 0.22 -4.26 16 21 C -0.11 -3.63 10.00 22.25 0.22 -3.40 16 22 C -0.19 -7.80 5.68 22.41 0.13 -7.67 16 23 C -0.02 -0.54 9.67 22.66 0.22 -0.32 16 24 C -0.20 -5.77 10.11 22.57 0.23 -5.54 16 25 C 0.46 16.36 7.47 85.02 0.64 17.00 16 26 O -0.57 -21.85 16.57 -5.25 -0.09 -21.94 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 3.46 8.14 -2.39 -0.02 3.45 16 31 H 0.11 3.32 7.27 -2.39 -0.02 3.31 16 32 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 33 H 0.17 6.71 4.72 -45.61 -0.22 6.50 16 34 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.12 5.54 4.43 -2.91 -0.01 5.52 16 38 H 0.18 4.49 7.73 -2.91 -0.02 4.47 16 39 H 0.20 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -60.58 322.99 5.12 -55.46 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.75 Total: 25.04 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.45 Total: 4.69 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.56 Total: -82.66 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.14 Total: -46.00 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.62 Total: 43.47 kcal Total: -60.58 5.12 -55.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609502852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.283 kcal (2) G-P(sol) polarization free energy of solvation -60.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds