Wall clock time and date at job start Tue Mar 31 2020 10:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.68431 * 2 1 4 4 C 1.35453 * 108.87756 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86105 * 359.78023 * 4 3 2 6 6 C 1.37659 * 125.67481 * 180.02562 * 2 1 3 7 7 C 1.46679 * 126.23299 * 359.93649 * 6 2 1 8 8 O 1.21688 * 119.99968 * 353.20358 * 7 6 2 9 9 N 1.34772 * 119.99768 * 173.20295 * 7 6 2 10 10 N 1.40097 * 119.99843 * 185.31590 * 9 7 6 11 11 C 1.34781 * 120.00248 * 180.02562 * 10 9 7 12 12 O 1.21594 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.47635 * 120.00363 * 179.97438 * 11 10 9 14 14 C 1.40020 * 119.89587 * 0.24837 * 13 11 10 15 15 C 1.36318 * 120.10768 * 180.25468 * 14 13 11 16 16 C 1.40889 * 119.88870 * 359.47647 * 15 14 13 17 17 C 1.41110 * 120.10310 * 180.30354 * 16 15 14 18 18 H 1.07993 * 120.00816 * 153.24350 * 17 16 15 19 19 C 1.40232 * 119.99453 * 333.24082 * 17 16 15 20 20 N 1.30654 * 120.00128 * 343.38475 * 19 17 16 21 21 Si 1.86799 * 119.99911 * 163.38710 * 19 17 16 22 22 H 1.48501 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47046 * 119.99711 * 21 19 17 24 24 H 1.48495 * 109.47056 * 239.99643 * 21 19 17 25 25 C 1.40884 * 119.79706 * 0.27368 * 16 15 14 26 26 C 1.36322 * 119.89228 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46721 * 264.30670 * 1 2 3 28 28 H 1.09000 * 109.46562 * 24.30117 * 1 2 3 29 29 H 1.08996 * 109.47127 * 144.30112 * 1 2 3 30 30 H 1.07998 * 125.56067 * 0.02562 * 3 2 1 31 31 H 1.07993 * 126.06935 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.45745 * 180.25084 * 5 4 3 33 33 H 0.97003 * 120.00116 * 5.32517 * 9 7 6 34 34 H 0.96995 * 120.00420 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.94660 * 0.03155 * 14 13 11 36 36 H 1.07995 * 120.05409 * 179.75208 * 15 14 13 37 37 H 0.96993 * 119.99665 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.05984 * 180.02562 * 25 16 15 39 39 H 1.07995 * 119.94876 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5523 0.7092 -0.0006 5 6 3.5780 -0.6889 0.0042 6 6 2.2678 -1.1183 -0.0005 7 6 1.8123 -2.5125 0.0002 8 8 0.6287 -2.7659 0.1260 9 7 2.7046 -3.5130 -0.1386 10 7 2.2607 -4.8371 -0.2498 11 6 3.1530 -5.8377 -0.3881 12 8 4.3433 -5.5911 -0.4167 13 6 2.6852 -7.2331 -0.5047 14 6 1.3138 -7.5141 -0.4768 15 6 0.8773 -8.8015 -0.5790 16 6 1.8083 -9.8490 -0.7240 17 6 1.3611 -11.1827 -0.8366 18 1 1.9627 -11.9117 -1.3590 19 6 0.1355 -11.5614 -0.2700 20 7 -0.4350 -10.7975 0.6233 21 14 -0.6813 -13.1580 -0.7925 22 1 0.1621 -13.8357 -1.8097 23 1 -0.8381 -14.0435 0.3893 24 1 -2.0166 -12.8644 -1.3718 25 6 3.1869 -9.5609 -0.7569 26 6 3.6142 -8.2709 -0.6478 27 1 -0.3633 -0.1019 1.0226 28 1 -0.3632 0.9366 -0.4229 29 1 -0.3633 -0.8345 -0.5996 30 1 1.9084 2.1235 0.0004 31 1 4.4133 1.3610 -0.0003 32 1 4.4583 -1.3146 0.0088 33 1 3.6542 -3.3163 -0.1612 34 1 1.3112 -5.0338 -0.2274 35 1 0.6008 -6.7099 -0.3704 36 1 -0.1805 -9.0176 -0.5533 37 1 -1.2826 -11.0597 1.0154 38 1 3.9042 -10.3605 -0.8683 39 1 4.6708 -8.0490 -0.6725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758138622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:11 Heat of formation + Delta-G solvation = 28.961423 kcal Electronic energy + Delta-G solvation = -24113.249678 eV Core-core repulsion = 20408.668433 eV Total energy + Delta-G solvation = -3704.581245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57049 -39.76923 -38.49612 -37.16997 -35.05029 -33.94957 -33.14889 -31.71633 -30.16049 -29.54523 -28.73951 -26.70654 -25.92256 -23.22596 -22.10658 -21.08944 -20.75193 -20.68825 -19.45960 -18.06155 -17.62421 -17.41451 -16.49070 -15.90074 -15.66487 -15.38512 -14.85693 -14.69415 -14.15719 -14.06717 -13.88323 -13.60195 -13.42727 -13.29722 -12.86488 -12.61919 -12.51930 -12.25801 -12.18252 -12.04299 -11.52977 -11.34310 -11.12418 -10.95192 -10.70088 -10.27096 -10.12122 -9.63269 -9.44956 -9.28685 -8.96990 -8.57185 -8.06642 -7.79538 -7.59663 -7.09348 -4.67900 1.26569 1.91596 2.08693 2.52785 2.76941 2.86092 2.92618 2.96512 2.98224 3.21310 3.69451 3.74545 4.22450 4.47598 4.57249 4.74567 4.80503 5.03118 5.16015 5.21219 5.39873 5.47778 5.72872 5.83843 5.95135 5.97498 6.22583 6.47161 6.70473 6.72906 6.75948 6.87182 6.91354 6.97409 7.00753 7.07507 7.36595 7.57028 7.67211 7.78675 7.98683 8.01646 8.08021 8.32566 8.55498 8.66508 8.88800 9.83041 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.002470 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.296402 B =11334.159908 C =12269.866117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.409 5.409 3 C 0.015 3.985 4 C -0.207 4.207 5 C -0.139 4.139 6 C -0.044 4.044 7 C 0.584 3.416 8 O -0.554 6.554 9 N -0.506 5.506 10 N -0.531 5.531 11 C 0.575 3.425 12 O -0.574 6.574 13 C -0.279 4.279 14 C -0.062 4.062 15 C -0.174 4.174 16 C 0.131 3.869 17 C -0.438 4.438 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.769 5.769 21 Si 0.915 3.085 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.268 1.268 25 C -0.236 4.236 26 C -0.016 4.016 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.431 0.569 34 H 0.430 0.570 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.288 0.712 38 H 0.101 0.899 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 17.027 -0.829 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.082 5.082 3 C -0.121 4.121 4 C -0.230 4.230 5 C -0.165 4.165 6 C -0.158 4.158 7 C 0.372 3.628 8 O -0.433 6.433 9 N -0.250 5.250 10 N -0.283 5.283 11 C 0.371 3.629 12 O -0.454 6.454 13 C -0.285 4.285 14 C -0.081 4.081 15 C -0.193 4.193 16 C 0.127 3.873 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.392 5.392 21 Si 0.738 3.262 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.193 1.193 25 C -0.256 4.256 26 C -0.035 4.035 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.187 0.813 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.274 0.726 34 H 0.273 0.727 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.716 16.988 -0.607 17.014 hybrid contribution -0.516 -0.521 0.011 0.733 sum -1.232 16.467 -0.596 16.524 Atomic orbital electron populations 1.22235 0.75928 1.04580 1.04428 1.43823 1.06888 1.04762 1.52746 1.22039 0.90710 0.91409 1.07896 1.20831 0.96067 0.94908 1.11242 1.21455 0.94420 0.95763 1.04884 1.19620 0.90530 0.86741 1.18956 1.16878 0.85289 0.82989 0.77650 1.90812 1.16196 1.84457 1.51859 1.44231 1.10297 0.96730 1.73792 1.45164 1.11169 0.93813 1.78104 1.18874 0.84812 0.84482 0.74686 1.90656 1.16276 1.84470 1.54022 1.18554 0.94142 0.89018 1.26770 1.20503 0.93041 0.96571 0.98029 1.20952 0.99935 0.90994 1.07396 1.17823 0.90917 0.93363 0.85190 1.19917 1.02376 0.95526 1.28731 0.89477 1.26134 0.96521 0.99451 0.92811 1.69739 1.15534 1.36710 1.17185 0.86140 0.79590 0.80646 0.79818 1.18010 1.19616 1.19336 1.20731 0.95403 0.95036 1.14424 1.20326 0.97374 0.91930 0.93912 0.90313 0.89801 0.88400 0.81280 0.83820 0.83573 0.72629 0.72685 0.89147 0.86174 0.90116 0.88077 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.35 59.85 0.62 1.22 16 2 N -0.41 -4.41 3.16 -120.23 -0.38 -4.79 16 3 C 0.01 0.13 11.37 -16.91 -0.19 -0.06 16 4 C -0.21 -1.91 10.81 -39.98 -0.43 -2.34 16 5 C -0.14 -1.53 10.35 -39.12 -0.41 -1.93 16 6 C -0.04 -0.56 6.88 -81.98 -0.56 -1.13 16 7 C 0.58 8.99 7.88 -12.85 -0.10 8.88 16 8 O -0.55 -9.67 14.76 5.20 0.08 -9.60 16 9 N -0.51 -8.02 6.24 30.26 0.19 -7.84 16 10 N -0.53 -9.67 6.21 30.48 0.19 -9.48 16 11 C 0.58 12.05 7.88 -12.42 -0.10 11.95 16 12 O -0.57 -12.89 16.16 5.28 0.09 -12.81 16 13 C -0.28 -6.23 5.89 -104.73 -0.62 -6.84 16 14 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 15 C -0.17 -4.19 8.62 -39.27 -0.34 -4.53 16 16 C 0.13 3.24 5.55 -106.80 -0.59 2.65 16 17 C -0.44 -10.63 9.04 -37.74 -0.34 -10.97 16 18 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 19 C 0.07 1.66 5.14 -17.30 -0.09 1.57 16 20 N -0.77 -18.19 11.02 55.56 0.61 -17.58 16 21 Si 0.91 16.97 29.59 -169.99 -5.03 11.94 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 25 C -0.24 -5.53 9.73 -39.27 -0.38 -5.92 16 26 C -0.02 -0.36 9.52 -39.61 -0.38 -0.74 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.10 1.02 6.83 -51.93 -0.35 0.67 16 30 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.15 1.38 7.46 -52.49 -0.39 0.98 16 33 H 0.43 6.25 6.91 -182.60 -1.26 4.99 16 34 H 0.43 7.62 6.01 -182.60 -1.10 6.52 16 35 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 36 H 0.12 2.94 6.27 -52.49 -0.33 2.62 16 37 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.10 2.25 7.63 -52.49 -0.40 1.85 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -29.68 341.09 -9.24 -38.91 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -5.83 Total: 16.02 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -4.29 Total: -9.93 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.61 Total: -39.68 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.16 Total: -22.40 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.68 -9.24 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758138622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.876 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds