Wall clock time and date at job start Tue Mar 31 2020 10:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.68431 * 2 1 4 4 C 1.35453 * 108.87756 * 180.02562 * 3 2 1 5 5 C 1.39840 * 107.86105 * 359.78023 * 4 3 2 6 6 C 1.37659 * 125.67481 * 180.02562 * 2 1 3 7 7 C 1.46679 * 126.23299 * 359.93649 * 6 2 1 8 8 O 1.21688 * 119.99968 * 353.20358 * 7 6 2 9 9 N 1.34772 * 119.99768 * 173.20295 * 7 6 2 10 10 N 1.40097 * 119.99843 * 185.31590 * 9 7 6 11 11 C 1.34781 * 120.00248 * 180.02562 * 10 9 7 12 12 O 1.21594 * 119.99816 * 359.97438 * 11 10 9 13 13 C 1.47635 * 120.00363 * 179.97438 * 11 10 9 14 14 C 1.40020 * 119.89587 * 0.24837 * 13 11 10 15 15 C 1.36318 * 120.10768 * 180.25468 * 14 13 11 16 16 C 1.40889 * 119.88870 * 359.47647 * 15 14 13 17 17 C 1.41110 * 120.10310 * 180.30354 * 16 15 14 18 18 H 1.07993 * 120.00816 * 153.24350 * 17 16 15 19 19 C 1.40232 * 119.99453 * 333.24082 * 17 16 15 20 20 N 1.30654 * 120.00128 * 343.38475 * 19 17 16 21 21 Si 1.86799 * 119.99911 * 163.38710 * 19 17 16 22 22 H 1.48501 * 109.46956 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47046 * 119.99711 * 21 19 17 24 24 H 1.48495 * 109.47056 * 239.99643 * 21 19 17 25 25 C 1.40884 * 119.79706 * 0.27368 * 16 15 14 26 26 C 1.36322 * 119.89228 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46721 * 264.30670 * 1 2 3 28 28 H 1.09000 * 109.46562 * 24.30117 * 1 2 3 29 29 H 1.08996 * 109.47127 * 144.30112 * 1 2 3 30 30 H 1.07998 * 125.56067 * 0.02562 * 3 2 1 31 31 H 1.07993 * 126.06935 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.45745 * 180.25084 * 5 4 3 33 33 H 0.97003 * 120.00116 * 5.32517 * 9 7 6 34 34 H 0.96995 * 120.00420 * 0.02562 * 10 9 7 35 35 H 1.08002 * 119.94660 * 0.03155 * 14 13 11 36 36 H 1.07995 * 120.05409 * 179.75208 * 15 14 13 37 37 H 0.96993 * 119.99665 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.05984 * 180.02562 * 25 16 15 39 39 H 1.07995 * 119.94876 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5523 0.7092 -0.0006 5 6 3.5780 -0.6889 0.0042 6 6 2.2678 -1.1183 -0.0005 7 6 1.8123 -2.5125 0.0002 8 8 0.6287 -2.7659 0.1260 9 7 2.7046 -3.5130 -0.1386 10 7 2.2607 -4.8371 -0.2498 11 6 3.1530 -5.8377 -0.3881 12 8 4.3433 -5.5911 -0.4167 13 6 2.6852 -7.2331 -0.5047 14 6 1.3138 -7.5141 -0.4768 15 6 0.8773 -8.8015 -0.5790 16 6 1.8083 -9.8490 -0.7240 17 6 1.3611 -11.1827 -0.8366 18 1 1.9627 -11.9117 -1.3590 19 6 0.1355 -11.5614 -0.2700 20 7 -0.4350 -10.7975 0.6233 21 14 -0.6813 -13.1580 -0.7925 22 1 0.1621 -13.8357 -1.8097 23 1 -0.8381 -14.0435 0.3893 24 1 -2.0166 -12.8644 -1.3718 25 6 3.1869 -9.5609 -0.7569 26 6 3.6142 -8.2709 -0.6478 27 1 -0.3633 -0.1019 1.0226 28 1 -0.3632 0.9366 -0.4229 29 1 -0.3633 -0.8345 -0.5996 30 1 1.9084 2.1235 0.0004 31 1 4.4133 1.3610 -0.0003 32 1 4.4583 -1.3146 0.0088 33 1 3.6542 -3.3163 -0.1612 34 1 1.3112 -5.0338 -0.2274 35 1 0.6008 -6.7099 -0.3704 36 1 -0.1805 -9.0176 -0.5533 37 1 -1.2826 -11.0597 1.0154 38 1 3.9042 -10.3605 -0.8683 39 1 4.6708 -8.0490 -0.6725 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758138622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:10 Heat of formation + Delta-G solvation = 11.462875 kcal Electronic energy + Delta-G solvation = -24114.008472 eV Core-core repulsion = 20408.668433 eV Total energy + Delta-G solvation = -3705.340039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.42446 -41.21723 -39.94199 -38.89172 -36.48162 -35.71257 -34.00450 -33.09880 -31.70973 -31.34982 -29.83747 -27.64626 -27.40752 -24.50907 -23.62297 -22.82579 -22.17794 -21.60687 -20.63067 -19.39940 -19.13724 -18.85963 -17.85256 -17.24687 -16.92626 -16.71378 -16.08726 -15.95383 -15.75395 -15.46110 -15.26780 -15.09624 -14.55277 -14.43782 -14.14059 -13.96147 -13.76228 -13.32612 -13.30825 -13.23984 -12.94780 -12.88035 -12.72673 -12.47759 -12.37872 -11.78982 -11.50670 -11.41680 -11.17466 -10.99511 -9.75344 -9.73196 -9.60812 -9.43656 -9.14214 -8.81841 -6.51947 0.23392 0.40928 0.64074 1.12267 1.37334 1.41312 1.55774 1.75214 1.95513 1.98724 2.15936 2.23852 2.72528 3.01872 3.57922 3.63899 3.95765 4.09698 4.17233 4.24266 4.36738 4.41965 4.43269 4.52190 4.72138 4.90593 4.99852 5.09374 5.12420 5.22596 5.23811 5.47486 5.50927 5.58025 5.75758 5.82271 5.90884 5.96245 6.00353 6.18329 6.29528 6.48130 6.50941 6.73553 6.76842 6.83764 7.31699 8.13735 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.027197 B = 0.002470 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.296402 B =11334.159908 C =12269.866117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.417 5.417 3 C 0.036 3.964 4 C -0.218 4.218 5 C -0.134 4.134 6 C -0.088 4.088 7 C 0.586 3.414 8 O -0.581 6.581 9 N -0.506 5.506 10 N -0.525 5.525 11 C 0.580 3.420 12 O -0.590 6.590 13 C -0.286 4.286 14 C -0.056 4.056 15 C -0.194 4.194 16 C 0.104 3.896 17 C -0.466 4.466 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.798 5.798 21 Si 0.989 3.011 22 H -0.254 1.254 23 H -0.264 1.264 24 H -0.262 1.262 25 C -0.247 4.247 26 C -0.022 4.022 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.212 0.788 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.437 0.563 34 H 0.432 0.568 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.297 0.703 38 H 0.111 0.889 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 18.954 -0.954 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.090 5.090 3 C -0.100 4.100 4 C -0.241 4.241 5 C -0.162 4.162 6 C -0.201 4.201 7 C 0.376 3.624 8 O -0.463 6.463 9 N -0.252 5.252 10 N -0.274 5.274 11 C 0.374 3.626 12 O -0.473 6.473 13 C -0.292 4.292 14 C -0.075 4.075 15 C -0.213 4.213 16 C 0.101 3.899 17 C -0.493 4.493 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.422 5.422 21 Si 0.809 3.191 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.267 4.267 26 C -0.042 4.042 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.229 0.771 31 H 0.187 0.813 32 H 0.172 0.828 33 H 0.281 0.719 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.939 18.939 -0.728 18.976 hybrid contribution -0.410 -0.893 0.086 0.986 sum -1.350 18.046 -0.642 18.108 Atomic orbital electron populations 1.22334 0.75104 1.05640 1.04274 1.44080 1.07621 1.04669 1.52589 1.22818 0.90333 0.92438 1.04432 1.21227 0.97443 0.94242 1.11231 1.21767 0.93988 0.97122 1.03297 1.19414 0.91769 0.85912 1.23021 1.17342 0.84755 0.83858 0.76437 1.90788 1.17284 1.84993 1.53186 1.44353 1.10833 0.95475 1.74552 1.44871 1.10818 0.94942 1.76786 1.18550 0.84713 0.84517 0.74777 1.90639 1.16906 1.84751 1.54962 1.18773 0.94234 0.90005 1.26211 1.20690 0.93545 0.96585 0.96709 1.20960 0.99502 0.91800 1.09073 1.18167 0.91678 0.94150 0.85926 1.20189 1.03816 0.95577 1.29755 0.89173 1.26979 0.96405 1.02821 0.92178 1.69769 1.16170 1.38492 1.17740 0.85042 0.78442 0.76207 0.79452 1.17754 1.18891 1.18651 1.20899 0.95298 0.95741 1.14744 1.20493 0.98007 0.91935 0.93741 0.90389 0.85969 0.90811 0.77126 0.81312 0.82762 0.71943 0.72450 0.86803 0.87087 0.89160 0.87044 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.35 127.77 1.32 2.38 16 2 N -0.42 -8.13 3.16 -534.31 -1.69 -9.82 16 3 C 0.04 0.49 11.37 83.48 0.95 1.44 16 4 C -0.22 -3.34 10.81 22.01 0.24 -3.10 16 5 C -0.13 -2.74 10.35 22.57 0.23 -2.51 16 6 C -0.09 -2.18 6.88 40.35 0.28 -1.90 16 7 C 0.59 18.09 7.88 86.45 0.68 18.78 16 8 O -0.58 -20.64 14.76 -4.31 -0.06 -20.70 16 9 N -0.51 -16.07 6.24 -176.40 -1.10 -17.17 16 10 N -0.53 -19.17 6.21 -175.73 -1.09 -20.26 16 11 C 0.58 24.32 7.88 86.72 0.68 25.00 16 12 O -0.59 -26.48 16.16 -4.01 -0.06 -26.55 16 13 C -0.29 -12.92 5.89 -19.93 -0.12 -13.04 16 14 C -0.06 -2.51 9.47 22.25 0.21 -2.30 16 15 C -0.19 -9.62 8.62 22.47 0.19 -9.42 16 16 C 0.10 5.31 5.55 -21.28 -0.12 5.20 16 17 C -0.47 -23.07 9.04 23.46 0.21 -22.85 16 18 H 0.09 4.24 7.90 -2.91 -0.02 4.22 16 19 C 0.04 1.62 5.14 85.35 0.44 2.06 16 20 N -0.80 -38.23 11.02 21.87 0.24 -37.99 16 21 Si 0.99 34.48 29.59 68.60 2.03 36.51 16 22 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 23 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 24 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 25 C -0.25 -11.84 9.73 22.47 0.22 -11.62 16 26 C -0.02 -1.03 9.52 22.25 0.21 -0.82 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.12 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.07 1.53 6.83 -2.39 -0.02 1.52 16 30 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.15 2.72 7.46 -2.91 -0.02 2.69 16 33 H 0.44 12.62 6.91 -213.32 -1.47 11.15 16 34 H 0.43 15.39 6.01 -213.33 -1.28 14.11 16 35 H 0.11 4.42 6.37 -2.91 -0.02 4.41 16 36 H 0.11 5.62 6.27 -2.91 -0.02 5.60 16 37 H 0.30 12.66 8.29 -92.71 -0.77 11.89 16 38 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 39 H 0.11 4.91 7.63 -2.91 -0.02 4.89 16 Total: -1.00 -65.14 341.09 2.26 -62.88 By element: Atomic # 1 Polarization: 47.45 SS G_CDS: -1.63 Total: 45.82 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.64 Total: -12.72 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.64 Total: -85.24 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.13 Total: -47.25 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -65.14 2.26 -62.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758138622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.342 kcal (2) G-P(sol) polarization free energy of solvation -65.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds