Wall clock time and date at job start Tue Mar 31 2020 10:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.84338 * 2 1 4 4 C 1.54596 * 110.78460 * 236.59718 * 2 1 3 5 5 C 1.51720 * 102.88691 * 216.48984 * 4 2 1 6 6 N 1.31068 * 126.27013 * 195.20167 * 5 4 2 7 7 C 1.34852 * 120.00163 * 186.90289 * 6 5 4 8 8 O 1.21839 * 119.99747 * 4.94664 * 7 6 5 9 9 C 1.47097 * 119.99899 * 184.95353 * 7 6 5 10 10 C 1.36220 * 125.29272 * 174.69837 * 9 7 6 11 11 C 1.46040 * 106.93492 * 180.28596 * 10 9 7 12 12 C 1.39874 * 133.74060 * 179.71516 * 11 10 9 13 13 C 1.36627 * 119.76664 * 180.02562 * 12 11 10 14 14 C 1.38856 * 120.54622 * 359.97438 * 13 12 11 15 15 C 1.37843 * 120.70579 * 0.04609 * 14 13 12 16 16 C 1.39109 * 119.82297 * 359.95673 * 15 14 13 17 17 N 1.37773 * 133.19194 * 179.97438 * 16 15 14 18 18 C 1.36897 * 125.12696 * 0.02562 * 17 16 15 19 19 H 1.08004 * 120.00202 * 145.75514 * 18 17 16 20 20 C 1.39015 * 120.00230 * 325.76100 * 18 17 16 21 21 N 1.31350 * 119.99808 * 335.06546 * 20 18 17 22 22 Si 1.86803 * 120.00217 * 155.34338 * 20 18 17 23 23 H 1.48500 * 109.46967 * 179.72662 * 22 20 18 24 24 H 1.48501 * 109.46837 * 299.72332 * 22 20 18 25 25 H 1.48491 * 109.47154 * 59.72291 * 22 20 18 26 26 N 1.35170 * 107.45906 * 15.46100 * 5 4 2 27 27 O 1.41447 * 111.60617 * 0.79736 * 26 5 4 28 28 H 1.09003 * 109.46738 * 183.40740 * 1 2 3 29 29 H 1.09005 * 109.47270 * 303.40294 * 1 2 3 30 30 H 1.08994 * 109.47615 * 63.40670 * 1 2 3 31 31 H 1.09005 * 110.72888 * 98.13622 * 4 2 1 32 32 H 1.09002 * 110.72878 * 334.84011 * 4 2 1 33 33 H 1.08004 * 126.52880 * 0.02562 * 10 9 7 34 34 H 1.07997 * 120.11956 * 0.04851 * 12 11 10 35 35 H 1.08001 * 119.73160 * 180.02562 * 13 12 11 36 36 H 1.08007 * 119.64975 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.09335 * 179.97438 * 15 14 13 38 38 H 0.97004 * 120.00103 * 354.26045 * 21 20 18 39 39 H 0.97001 * 124.19662 * 180.92684 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0785 -0.7957 -1.2066 5 6 3.3103 -1.4718 -0.6343 6 7 4.2756 -2.0336 -1.3201 7 6 5.2444 -2.7212 -0.6819 8 8 5.1746 -2.8970 0.5218 9 6 6.3854 -3.2587 -1.4388 10 6 7.4701 -3.8771 -0.8941 11 6 8.3522 -4.2406 -1.9998 12 6 9.5940 -4.8798 -2.0762 13 6 10.1805 -5.0793 -3.2939 14 6 9.5537 -4.6530 -4.4574 15 6 8.3300 -4.0205 -4.4064 16 6 7.7127 -3.8059 -3.1784 17 7 6.5222 -3.2176 -2.8115 18 6 5.6144 -2.6698 -3.6775 19 1 4.5577 -2.7331 -3.4635 20 6 6.0527 -2.0321 -4.8323 21 7 7.2607 -1.5187 -4.8809 22 14 4.9209 -1.8984 -6.3124 23 1 5.6181 -1.1734 -7.4048 24 1 4.5522 -3.2595 -6.7781 25 1 3.6926 -1.1562 -5.9309 26 7 3.2269 -1.3937 0.7126 27 8 2.0411 -0.7414 1.1240 28 1 -0.3633 -1.0259 0.0611 29 1 -0.3634 0.5658 0.8579 30 1 -0.3634 0.4600 -0.9189 31 1 2.3503 -0.1236 -2.0206 32 1 1.3528 -1.5364 -1.5425 33 1 7.6462 -4.0596 0.1557 34 1 10.0874 -5.2149 -1.1758 35 1 11.1391 -5.5733 -3.3523 36 1 10.0302 -4.8185 -5.4124 37 1 7.8515 -3.6927 -5.3175 38 1 7.8165 -1.5103 -4.0859 39 1 3.8978 -1.7402 1.3214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765372392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:39 Heat of formation + Delta-G solvation = 47.541068 kcal Electronic energy + Delta-G solvation = -25637.733925 eV Core-core repulsion = 21933.958354 eV Total energy + Delta-G solvation = -3703.775571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.26890 -41.66412 -40.06132 -37.71956 -36.08576 -35.42236 -33.98058 -32.24438 -32.05983 -30.68122 -29.77777 -28.82170 -26.35476 -25.55922 -23.05327 -22.80328 -22.56053 -21.60393 -20.89534 -19.78412 -18.92484 -18.60047 -17.38667 -17.13815 -16.97457 -16.54262 -16.19012 -15.83370 -15.64565 -15.36247 -14.90504 -14.81490 -14.63831 -14.39035 -14.22238 -13.84610 -13.79339 -13.53552 -13.35252 -12.87699 -12.78397 -12.49144 -12.34785 -12.20217 -12.05995 -11.90378 -11.86914 -11.52259 -11.43624 -10.77655 -10.60923 -10.45759 -9.90255 -9.28066 -8.81651 -8.50152 -6.21411 -0.44307 0.46959 0.95181 0.96402 1.50996 1.55851 1.72254 1.84517 2.29774 2.45941 2.59271 2.75030 2.93285 2.99363 3.22308 3.37484 3.55630 3.90087 4.12286 4.14667 4.33532 4.36454 4.53339 4.55895 4.64540 4.66565 4.72983 4.85048 4.88686 4.94489 5.16092 5.22072 5.23557 5.29692 5.33585 5.62379 5.76992 5.83901 5.88941 5.96964 6.08431 6.17042 6.32682 6.48817 7.03936 7.24814 7.37424 8.23656 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.004783 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.664994 B = 5852.388925 C = 7576.000387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 H 0.108 0.892 4 C -0.109 4.109 5 C 0.442 3.558 6 N -0.610 5.610 7 C 0.561 3.439 8 O -0.585 6.585 9 C -0.040 4.040 10 C -0.196 4.196 11 C -0.155 4.155 12 C -0.086 4.086 13 C -0.153 4.153 14 C -0.128 4.128 15 C -0.108 4.108 16 C 0.029 3.971 17 N -0.263 5.263 18 C -0.414 4.414 19 H 0.121 0.879 20 C -0.016 4.016 21 N -0.847 5.847 22 Si 1.124 2.876 23 H -0.278 1.278 24 H -0.269 1.269 25 H -0.247 1.247 26 N -0.559 5.559 27 O -0.163 6.163 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.106 0.894 38 H 0.263 0.737 39 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.147 3.386 2.965 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.006 4.006 3 H 0.126 0.874 4 C -0.148 4.148 5 C 0.175 3.825 6 N -0.367 5.367 7 C 0.355 3.645 8 O -0.468 6.468 9 C -0.155 4.155 10 C -0.224 4.224 11 C -0.159 4.159 12 C -0.104 4.104 13 C -0.171 4.171 14 C -0.148 4.148 15 C -0.128 4.128 16 C -0.085 4.085 17 N 0.074 4.926 18 C -0.542 4.542 19 H 0.138 0.862 20 C -0.224 4.224 21 N -0.474 5.474 22 Si 0.941 3.059 23 H -0.203 1.203 24 H -0.194 1.194 25 H -0.171 1.171 26 N -0.249 5.249 27 O -0.168 6.168 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -11.456 3.962 1.505 12.215 hybrid contribution 0.784 -0.522 2.854 3.005 sum -10.672 3.440 4.358 12.030 Atomic orbital electron populations 1.21939 0.88215 1.04276 1.05405 1.24014 0.98417 0.95880 0.82318 0.87434 1.22620 0.90757 1.01116 1.00315 1.24739 0.92060 0.84554 0.81125 1.70101 1.07408 1.24964 1.34222 1.18941 0.83604 0.77470 0.84515 1.90397 1.78383 1.60863 1.17147 1.20013 0.98903 1.12324 0.84243 1.21595 0.94408 1.08779 0.97640 1.19310 0.97764 1.06912 0.91952 1.20466 0.92668 0.98364 0.98923 1.20807 1.01327 1.03617 0.91390 1.21059 0.94114 0.99985 0.99620 1.20414 0.96765 1.01058 0.94562 1.18748 0.90587 1.03257 0.95929 1.40373 1.13604 1.35149 1.03428 1.21282 0.91447 1.38146 1.03318 0.86162 1.28301 0.99439 0.91000 1.03630 1.70742 1.10159 1.33980 1.32530 0.82874 0.73907 0.78233 0.70922 1.20268 1.19404 1.17074 1.48544 1.15500 1.54046 1.06832 1.90934 1.27886 1.65118 1.32902 0.91278 0.90211 0.87089 0.84182 0.84018 0.83810 0.84554 0.83066 0.84119 0.87561 0.92630 0.69645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.58 71.98 0.69 -0.57 16 2 C 0.05 0.82 4.38 31.14 0.14 0.95 16 3 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 4 C -0.11 -2.17 6.59 30.72 0.20 -1.97 16 5 C 0.44 14.68 7.93 138.25 1.10 15.77 16 6 N -0.61 -26.66 7.95 -303.89 -2.42 -29.08 16 7 C 0.56 27.76 7.70 86.56 0.67 28.42 16 8 O -0.59 -28.09 14.21 -4.80 -0.07 -28.16 16 9 C -0.04 -2.17 6.76 40.03 0.27 -1.90 16 10 C -0.20 -9.99 10.77 23.82 0.26 -9.73 16 11 C -0.15 -7.71 6.35 -20.19 -0.13 -7.84 16 12 C -0.09 -3.49 10.06 22.29 0.22 -3.27 16 13 C -0.15 -5.60 9.97 22.04 0.22 -5.38 16 14 C -0.13 -5.17 10.01 22.32 0.22 -4.94 16 15 C -0.11 -5.34 8.37 22.39 0.19 -5.16 16 16 C 0.03 1.55 5.52 39.09 0.22 1.77 16 17 N -0.26 -14.66 2.66 -331.20 -0.88 -15.54 16 18 C -0.41 -22.30 8.67 84.09 0.73 -21.57 16 19 H 0.12 6.33 6.58 -2.91 -0.02 6.31 16 20 C -0.02 -0.82 4.13 84.95 0.35 -0.47 16 21 N -0.85 -46.96 11.57 21.67 0.25 -46.71 16 22 Si 1.12 43.15 29.99 68.60 2.06 45.21 16 23 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.25 -8.25 7.11 99.48 0.71 -7.54 16 26 N -0.56 -17.55 6.97 -49.36 -0.34 -17.89 16 27 O -0.16 -3.97 12.20 -38.44 -0.47 -4.44 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.14 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.14 2.25 7.91 -2.39 -0.02 2.24 16 33 H 0.14 6.67 8.06 -2.91 -0.02 6.65 16 34 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.11 5.52 6.20 -2.91 -0.02 5.50 16 38 H 0.26 15.88 7.03 -92.71 -0.65 15.22 16 39 H 0.45 15.62 6.20 -92.71 -0.58 15.05 16 Total: -1.00 -73.37 330.54 4.12 -69.26 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: 0.65 Total: 43.25 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.34 Total: -15.89 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.39 Total: -109.22 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.54 Total: -32.60 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.06 Total: 45.21 kcal Total: -73.37 4.12 -69.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765372392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.798 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds