Wall clock time and date at job start Tue Mar 31 2020 10:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.79867 * 2 1 4 4 C 1.54690 * 110.74377 * 236.69718 * 2 1 3 5 5 C 1.51670 * 101.89552 * 267.04103 * 4 2 1 6 6 C 1.37312 * 132.06805 * 164.55525 * 5 4 2 7 7 C 1.39821 * 119.85870 * 180.77562 * 6 5 4 8 8 C 1.47586 * 120.26769 * 179.65319 * 7 6 5 9 9 O 1.21606 * 119.99845 * 359.72913 * 8 7 6 10 10 N 1.34774 * 119.99612 * 179.72699 * 8 7 6 11 11 C 1.40539 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.40669 * 126.08448 * 0.02721 * 11 10 8 13 13 N 1.30897 * 108.38811 * 179.97438 * 12 11 10 14 14 N 1.40065 * 108.41090 * 359.97438 * 13 12 11 15 15 C 1.37326 * 126.06735 * 180.26298 * 14 13 12 16 16 H 1.08001 * 119.99996 * 179.69319 * 15 14 13 17 17 C 1.38994 * 119.99726 * 359.69468 * 15 14 13 18 18 N 1.31291 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99768 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47078 * 60.00257 * 19 17 15 21 21 H 1.48495 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47185 * 300.00344 * 19 17 15 23 23 C 1.35689 * 126.08612 * 180.02562 * 11 10 8 24 24 C 1.39756 * 119.46266 * 359.38655 * 7 6 5 25 25 C 1.37479 * 120.20196 * 0.13877 * 24 7 6 26 26 C 1.39183 * 106.99680 * 344.47613 * 5 4 2 27 27 O 1.35997 * 111.17630 * 359.08505 * 26 5 4 28 28 H 1.08998 * 109.47290 * 298.15678 * 1 2 3 29 29 H 1.08999 * 109.47440 * 58.16095 * 1 2 3 30 30 H 1.09005 * 109.47058 * 178.15574 * 1 2 3 31 31 H 1.08993 * 110.94901 * 25.19300 * 4 2 1 32 32 H 1.09007 * 110.94815 * 148.89395 * 4 2 1 33 33 H 1.08004 * 120.07275 * 0.48036 * 6 5 4 34 34 H 0.96998 * 120.00431 * 0.02562 * 10 8 7 35 35 H 1.08001 * 125.80207 * 0.02562 * 12 11 10 36 36 H 0.97005 * 120.00135 * 179.97438 * 18 17 15 37 37 H 1.07995 * 126.24867 * 359.97438 * 23 11 10 38 38 H 1.07998 * 119.89957 * 180.11945 * 24 7 6 39 39 H 1.07997 * 119.78219 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0779 -0.7943 -1.2091 5 6 2.2603 -2.1787 -0.6169 6 6 2.4481 -3.4095 -1.1959 7 6 2.5738 -4.5457 -0.3907 8 6 2.7683 -5.8740 -1.0037 9 8 2.8149 -5.9843 -2.2139 10 7 2.8943 -6.9648 -0.2222 11 6 3.0790 -8.2299 -0.8059 12 6 3.1520 -8.5039 -2.1837 13 7 3.3290 -9.7914 -2.3398 14 7 3.3765 -10.3882 -1.0735 15 6 3.5547 -11.7253 -0.8161 16 1 3.5806 -12.0800 0.2037 17 6 3.7017 -12.6219 -1.8679 18 7 3.6707 -12.1905 -3.1075 19 14 3.9447 -14.4406 -1.5176 20 1 2.7754 -14.9602 -0.7641 21 1 4.0743 -15.1786 -2.7997 22 1 5.1770 -14.6289 -0.7106 23 6 3.2187 -9.4042 -0.1408 24 6 2.5193 -4.4125 0.9994 25 6 2.3407 -3.1741 1.5690 26 6 2.2102 -2.0391 0.7670 27 8 2.0391 -0.7379 1.1236 28 1 -0.3634 0.4849 0.9060 29 1 -0.3634 0.5421 -0.8730 30 1 -0.3633 -1.0272 -0.0331 31 1 1.3546 -0.8114 -2.0242 32 1 3.0311 -0.3853 -1.5444 33 1 2.4939 -3.5005 -2.2711 34 1 2.8568 -6.8769 0.7430 35 1 3.0758 -7.7757 -2.9777 36 1 3.7737 -12.8162 -3.8415 37 1 3.2086 -9.5362 0.9310 38 1 2.6175 -5.2851 1.6281 39 1 2.3000 -3.0789 2.6440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824757512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:57 Heat of formation + Delta-G solvation = 45.901132 kcal Electronic energy + Delta-G solvation = -24307.640572 eV Core-core repulsion = 20603.793888 eV Total energy + Delta-G solvation = -3703.846684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49865 -39.95069 -38.82718 -37.02683 -34.28540 -33.46326 -33.14760 -31.17350 -30.52988 -30.09101 -27.86031 -26.95459 -25.01820 -23.60977 -22.27144 -21.85860 -21.00465 -20.27823 -19.36963 -17.75732 -17.46424 -16.99641 -16.58833 -16.13048 -15.44341 -15.08060 -14.70019 -14.54549 -14.39768 -14.01314 -13.73769 -13.59945 -13.29529 -13.18052 -12.92849 -12.78889 -12.68065 -12.45999 -12.35470 -11.66688 -11.54014 -11.41261 -11.25115 -11.07542 -10.95224 -10.93196 -10.55278 -10.14458 -9.25034 -9.15142 -9.10672 -8.79493 -8.34617 -8.04093 -6.67582 -6.54484 -4.21205 0.80413 1.16321 2.80533 2.96035 3.05477 3.07095 3.09665 3.56676 3.56943 3.88319 3.92193 4.08746 4.28542 4.47905 4.51465 4.63227 4.73612 4.77498 4.89936 5.03453 5.05055 5.10524 5.22193 5.26951 5.39829 5.49944 5.51716 5.72981 5.83022 6.01924 6.15926 6.21314 6.27229 6.32504 6.49629 6.91153 6.93576 6.97682 7.14206 7.25453 7.87043 8.19499 8.29307 8.64589 8.86851 9.39058 9.68398 10.41455 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.047325 B = 0.002311 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.506807 B =12114.665989 C =12523.862319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.116 0.884 4 C -0.105 4.105 5 C -0.183 4.183 6 C -0.012 4.012 7 C -0.146 4.146 8 C 0.544 3.456 9 O -0.535 6.535 10 N -0.617 5.617 11 C -0.059 4.059 12 C -0.032 4.032 13 N -0.260 5.260 14 N -0.142 5.142 15 C -0.323 4.323 16 H 0.116 0.884 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.935 3.065 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.084 4.084 24 C -0.055 4.055 25 C -0.145 4.145 26 C 0.123 3.877 27 O -0.299 6.299 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.396 0.604 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 20.333 8.484 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.134 0.866 4 C -0.142 4.142 5 C -0.184 4.184 6 C -0.031 4.031 7 C -0.149 4.149 8 C 0.331 3.669 9 O -0.414 6.414 10 N -0.259 5.259 11 C -0.165 4.165 12 C -0.207 4.207 13 N -0.092 5.092 14 N 0.090 4.910 15 C -0.455 4.455 16 H 0.133 0.867 17 C -0.171 4.171 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.235 4.235 24 C -0.074 4.074 25 C -0.164 4.164 26 C 0.077 3.923 27 O -0.213 6.213 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.956 19.320 6.738 20.840 hybrid contribution -0.042 -0.044 1.270 1.271 sum -3.998 19.276 8.007 21.252 Atomic orbital electron populations 1.22257 0.94069 1.03489 1.03153 1.23454 0.94842 0.96346 0.83321 0.86607 1.21861 1.02864 0.91062 0.98417 1.20645 1.08618 0.95357 0.93790 1.20355 0.93004 0.88986 1.00801 1.19873 1.07724 0.93926 0.93419 1.17850 0.78949 0.83358 0.86718 1.90669 1.51176 1.85690 1.13854 1.42396 1.69618 1.05073 1.08832 1.17254 1.23008 0.83372 0.92867 1.24135 1.07505 0.94568 0.94507 1.78252 1.25458 1.05217 1.00229 1.44545 1.38396 1.05165 1.02853 1.19827 1.52063 0.78522 0.95108 0.86654 1.25646 0.95618 1.01247 0.94630 1.70208 1.35159 1.35703 0.98558 0.85893 0.79475 0.80323 0.78442 1.19166 1.20147 1.19158 1.21253 1.19421 0.87998 0.94829 1.21055 0.95673 0.96822 0.93847 1.20133 1.07271 0.89097 0.99873 1.19792 0.94792 0.84912 0.92824 1.86842 1.79622 1.16618 1.38229 0.91303 0.90531 0.91657 0.88725 0.88953 0.84290 0.77029 0.80653 0.91404 0.83664 0.84645 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.49 37.16 0.35 -0.75 16 2 C 0.08 0.56 4.31 -25.84 -0.11 0.45 16 3 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.84 6.65 -26.52 -0.18 -1.02 16 5 C -0.18 -2.08 6.25 -104.13 -0.65 -2.73 16 6 C -0.01 -0.17 9.58 -39.33 -0.38 -0.54 16 7 C -0.15 -2.09 5.88 -104.92 -0.62 -2.71 16 8 C 0.54 10.02 7.74 -12.45 -0.10 9.93 16 9 O -0.54 -11.82 13.50 5.27 0.07 -11.75 16 10 N -0.62 -11.28 5.42 -10.92 -0.06 -11.34 16 11 C -0.06 -1.39 6.90 -83.86 -0.58 -1.97 16 12 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 13 N -0.26 -7.66 10.39 30.80 0.32 -7.34 16 14 N -0.14 -3.93 3.74 -11.41 -0.04 -3.97 16 15 C -0.32 -8.58 10.25 -14.81 -0.15 -8.73 16 16 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.65 11.81 55.50 0.66 -20.99 16 19 Si 0.93 18.98 29.55 -169.99 -5.02 13.95 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 C -0.08 -1.99 11.49 -16.39 -0.19 -2.18 16 24 C -0.06 -0.63 9.52 -39.29 -0.37 -1.00 16 25 C -0.15 -1.55 10.05 -39.36 -0.40 -1.95 16 26 C 0.12 1.40 6.95 -38.73 -0.27 1.13 16 27 O -0.30 -3.17 10.81 -19.73 -0.21 -3.38 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 32 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.14 1.87 7.66 -52.48 -0.40 1.47 16 34 H 0.40 5.54 6.86 -40.82 -0.28 5.26 16 35 H 0.18 4.66 5.91 -52.49 -0.31 4.35 16 36 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.15 2.84 8.06 -52.49 -0.42 2.42 16 38 H 0.14 1.21 6.40 -52.49 -0.34 0.88 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -34.46 335.65 -7.39 -41.86 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.24 Total: 9.90 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -3.91 Total: -11.99 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.87 Total: -43.64 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.14 Total: -15.13 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.46 -7.39 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.756 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds