Wall clock time and date at job start Tue Mar 31 2020 10:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.79867 * 2 1 4 4 C 1.54690 * 110.74377 * 236.69718 * 2 1 3 5 5 C 1.51670 * 101.89552 * 267.04103 * 4 2 1 6 6 C 1.37312 * 132.06805 * 164.55525 * 5 4 2 7 7 C 1.39821 * 119.85870 * 180.77562 * 6 5 4 8 8 C 1.47586 * 120.26769 * 179.65319 * 7 6 5 9 9 O 1.21606 * 119.99845 * 359.72913 * 8 7 6 10 10 N 1.34774 * 119.99612 * 179.72699 * 8 7 6 11 11 C 1.40539 * 119.99839 * 179.97438 * 10 8 7 12 12 C 1.40669 * 126.08448 * 0.02721 * 11 10 8 13 13 N 1.30897 * 108.38811 * 179.97438 * 12 11 10 14 14 N 1.40065 * 108.41090 * 359.97438 * 13 12 11 15 15 C 1.37326 * 126.06735 * 180.26298 * 14 13 12 16 16 H 1.08001 * 119.99996 * 179.69319 * 15 14 13 17 17 C 1.38994 * 119.99726 * 359.69468 * 15 14 13 18 18 N 1.31291 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99768 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47078 * 60.00257 * 19 17 15 21 21 H 1.48495 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47185 * 300.00344 * 19 17 15 23 23 C 1.35689 * 126.08612 * 180.02562 * 11 10 8 24 24 C 1.39756 * 119.46266 * 359.38655 * 7 6 5 25 25 C 1.37479 * 120.20196 * 0.13877 * 24 7 6 26 26 C 1.39183 * 106.99680 * 344.47613 * 5 4 2 27 27 O 1.35997 * 111.17630 * 359.08505 * 26 5 4 28 28 H 1.08998 * 109.47290 * 298.15678 * 1 2 3 29 29 H 1.08999 * 109.47440 * 58.16095 * 1 2 3 30 30 H 1.09005 * 109.47058 * 178.15574 * 1 2 3 31 31 H 1.08993 * 110.94901 * 25.19300 * 4 2 1 32 32 H 1.09007 * 110.94815 * 148.89395 * 4 2 1 33 33 H 1.08004 * 120.07275 * 0.48036 * 6 5 4 34 34 H 0.96998 * 120.00431 * 0.02562 * 10 8 7 35 35 H 1.08001 * 125.80207 * 0.02562 * 12 11 10 36 36 H 0.97005 * 120.00135 * 179.97438 * 18 17 15 37 37 H 1.07995 * 126.24867 * 359.97438 * 23 11 10 38 38 H 1.07998 * 119.89957 * 180.11945 * 24 7 6 39 39 H 1.07997 * 119.78219 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0779 -0.7943 -1.2091 5 6 2.2603 -2.1787 -0.6169 6 6 2.4481 -3.4095 -1.1959 7 6 2.5738 -4.5457 -0.3907 8 6 2.7683 -5.8740 -1.0037 9 8 2.8149 -5.9843 -2.2139 10 7 2.8943 -6.9648 -0.2222 11 6 3.0790 -8.2299 -0.8059 12 6 3.1520 -8.5039 -2.1837 13 7 3.3290 -9.7914 -2.3398 14 7 3.3765 -10.3882 -1.0735 15 6 3.5547 -11.7253 -0.8161 16 1 3.5806 -12.0800 0.2037 17 6 3.7017 -12.6219 -1.8679 18 7 3.6707 -12.1905 -3.1075 19 14 3.9447 -14.4406 -1.5176 20 1 2.7754 -14.9602 -0.7641 21 1 4.0743 -15.1786 -2.7997 22 1 5.1770 -14.6289 -0.7106 23 6 3.2187 -9.4042 -0.1408 24 6 2.5193 -4.4125 0.9994 25 6 2.3407 -3.1741 1.5690 26 6 2.2102 -2.0391 0.7670 27 8 2.0391 -0.7379 1.1236 28 1 -0.3634 0.4849 0.9060 29 1 -0.3634 0.5421 -0.8730 30 1 -0.3633 -1.0272 -0.0331 31 1 1.3546 -0.8114 -2.0242 32 1 3.0311 -0.3853 -1.5444 33 1 2.4939 -3.5005 -2.2711 34 1 2.8568 -6.8769 0.7430 35 1 3.0758 -7.7757 -2.9777 36 1 3.7737 -12.8162 -3.8415 37 1 3.2086 -9.5362 0.9310 38 1 2.6175 -5.2851 1.6281 39 1 2.3000 -3.0789 2.6440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824757512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:56 Heat of formation + Delta-G solvation = 23.176975 kcal Electronic energy + Delta-G solvation = -24308.625965 eV Core-core repulsion = 20603.793888 eV Total energy + Delta-G solvation = -3704.832077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33226 -41.69581 -40.38310 -38.10449 -35.99404 -35.02426 -34.14836 -32.36403 -31.89154 -31.38873 -29.55744 -27.78374 -26.82850 -24.86484 -23.14116 -22.85431 -22.54531 -21.79157 -21.12953 -19.36123 -18.61302 -18.14318 -17.56424 -17.35563 -17.03416 -16.48922 -16.12837 -16.05812 -15.41893 -15.19355 -15.08659 -14.84750 -14.69023 -14.52585 -14.11976 -13.63195 -13.57293 -13.43958 -13.30256 -13.20722 -12.99554 -12.86187 -12.86041 -12.14587 -12.13259 -11.91070 -11.80967 -11.73911 -11.00655 -10.87832 -10.77101 -10.10201 -9.99985 -9.27334 -8.51335 -8.46251 -6.23563 -0.22024 0.26496 1.27846 1.40452 1.57129 1.61753 1.88057 2.03225 2.19415 2.28659 2.44462 2.85500 2.91208 3.10197 3.40592 3.56219 3.76700 3.86881 3.95448 4.11275 4.17167 4.28401 4.43233 4.50045 4.59022 4.65660 4.77765 4.82753 4.90312 4.99933 5.02692 5.10255 5.11212 5.23693 5.26292 5.28691 5.33105 5.42335 5.48198 5.96087 6.10117 6.31163 6.71674 6.74103 7.34920 7.46975 7.67843 8.53045 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.047325 B = 0.002311 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.506807 B =12114.665989 C =12523.862319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.145 0.855 4 C -0.105 4.105 5 C -0.189 4.189 6 C -0.025 4.025 7 C -0.169 4.169 8 C 0.544 3.456 9 O -0.580 6.580 10 N -0.609 5.609 11 C -0.045 4.045 12 C -0.061 4.061 13 N -0.310 5.310 14 N -0.167 5.167 15 C -0.354 4.354 16 H 0.143 0.857 17 C -0.008 4.008 18 N -0.825 5.825 19 Si 1.021 2.979 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.253 1.253 23 C -0.079 4.079 24 C -0.044 4.044 25 C -0.145 4.145 26 C 0.124 3.876 27 O -0.308 6.308 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.419 0.581 35 H 0.166 0.834 36 H 0.276 0.724 37 H 0.191 0.809 38 H 0.162 0.838 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 21.613 11.652 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 H 0.163 0.837 4 C -0.142 4.142 5 C -0.190 4.190 6 C -0.044 4.044 7 C -0.173 4.173 8 C 0.334 3.666 9 O -0.461 6.461 10 N -0.254 5.254 11 C -0.151 4.151 12 C -0.236 4.236 13 N -0.142 5.142 14 N 0.064 4.936 15 C -0.485 4.485 16 H 0.160 0.840 17 C -0.220 4.220 18 N -0.453 5.453 19 Si 0.839 3.161 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.177 1.177 23 C -0.229 4.229 24 C -0.062 4.062 25 C -0.163 4.163 26 C 0.078 3.922 27 O -0.222 6.222 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.257 0.743 35 H 0.183 0.817 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.180 0.820 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.270 20.655 9.965 23.327 hybrid contribution 0.003 -0.142 0.343 0.372 sum -4.267 20.513 10.308 23.351 Atomic orbital electron populations 1.22268 0.93350 1.02680 1.04461 1.23779 0.95464 0.97119 0.81811 0.83749 1.22004 1.03975 0.89132 0.99112 1.20897 1.07754 0.95919 0.94443 1.20334 0.93917 0.89864 1.00287 1.19565 1.11190 0.91622 0.94883 1.18558 0.77099 0.84652 0.86248 1.90645 1.52867 1.86518 1.16061 1.42286 1.69768 1.03257 1.10054 1.17323 1.20740 0.85456 0.91625 1.24171 1.09028 0.94097 0.96265 1.78147 1.27245 1.06420 1.02404 1.44851 1.39624 1.06248 1.02871 1.20609 1.52565 0.78581 0.96704 0.84000 1.26918 0.94362 1.06718 0.93975 1.70400 1.37221 1.37723 0.99983 0.84635 0.80175 0.73017 0.78262 1.17651 1.20395 1.17664 1.22006 1.17379 0.87076 0.96474 1.21268 0.94163 0.98280 0.92494 1.20448 1.06187 0.88415 1.01275 1.20082 0.93600 0.85664 0.92899 1.86843 1.79525 1.16142 1.39650 0.90741 0.88482 0.93527 0.87502 0.87795 0.85650 0.74298 0.81676 0.91396 0.79182 0.82044 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.49 71.98 0.68 -1.05 16 2 C 0.07 0.86 4.31 31.17 0.13 1.00 16 3 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.47 6.65 30.73 0.20 -1.26 16 5 C -0.19 -4.05 6.25 -19.55 -0.12 -4.17 16 6 C -0.02 -0.67 9.58 22.43 0.21 -0.45 16 7 C -0.17 -4.78 5.88 -20.06 -0.12 -4.90 16 8 C 0.54 20.41 7.74 86.71 0.67 21.08 16 9 O -0.58 -26.97 13.50 -4.05 -0.05 -27.03 16 10 N -0.61 -21.87 5.42 -306.73 -1.66 -23.53 16 11 C -0.05 -2.13 6.90 37.75 0.26 -1.87 16 12 C -0.06 -3.40 10.85 85.43 0.93 -2.48 16 13 N -0.31 -19.10 10.39 -56.46 -0.59 -19.69 16 14 N -0.17 -9.39 3.74 -190.00 -0.71 -10.10 16 15 C -0.35 -18.83 10.25 84.01 0.86 -17.96 16 16 H 0.14 6.48 7.83 -2.91 -0.02 6.45 16 17 C -0.01 -0.43 5.50 84.96 0.47 0.04 16 18 N -0.83 -48.28 11.81 21.66 0.26 -48.02 16 19 Si 1.02 38.77 29.55 68.60 2.03 40.80 16 20 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 21 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 23 C -0.08 -3.69 11.49 83.38 0.96 -2.73 16 24 C -0.04 -0.89 9.52 22.46 0.21 -0.68 16 25 C -0.14 -2.67 10.05 22.42 0.23 -2.45 16 26 C 0.12 2.54 6.95 22.82 0.16 2.70 16 27 O -0.31 -5.64 10.81 -93.51 -1.01 -6.65 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.66 8.13 -2.38 -0.02 0.64 16 31 H 0.11 1.22 7.92 -2.39 -0.02 1.20 16 32 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.13 3.60 7.66 -2.91 -0.02 3.58 16 34 H 0.42 10.78 6.86 -92.71 -0.64 10.14 16 35 H 0.17 9.45 5.91 -2.91 -0.02 9.43 16 36 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 37 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16 38 H 0.16 2.33 6.40 -2.91 -0.02 2.31 16 39 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -80.09 335.65 4.47 -75.62 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.47 Total: 33.79 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.74 Total: -15.19 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -2.70 Total: -101.35 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.07 Total: -33.67 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -80.09 4.47 -75.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.800 kcal (2) G-P(sol) polarization free energy of solvation -80.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds