Wall clock time and date at job start Tue Mar 31 2020 10:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00187 * 2 1 4 4 C 1.50701 * 109.46759 * 293.95593 * 3 2 1 5 5 H 1.07999 * 120.00547 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99925 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99937 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00108 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46918 * 89.99673 * 8 6 4 10 10 H 1.48493 * 109.47144 * 209.99583 * 8 6 4 11 11 H 1.48500 * 109.46896 * 330.00006 * 8 6 4 12 12 C 1.46900 * 111.00065 * 123.95183 * 2 1 3 13 13 C 1.50702 * 109.47113 * 66.04654 * 12 2 1 14 14 C 1.34229 * 126.56597 * 259.97628 * 13 12 2 15 15 N 1.36919 * 109.91048 * 180.02562 * 14 13 12 16 16 H 0.97002 * 124.97959 * 180.02562 * 15 14 13 17 17 C 1.37419 * 110.02427 * 0.02562 * 15 14 13 18 18 N 1.32652 * 133.18318 * 179.97438 * 17 15 14 19 19 C 1.31587 * 121.66949 * 180.02562 * 18 17 15 20 20 C 1.38669 * 121.57976 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.29050 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47293 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.46957 * 120.00190 * 21 20 19 24 24 F 1.39898 * 109.46958 * 239.99851 * 21 20 19 25 25 C 1.38196 * 119.41382 * 0.22960 * 20 19 18 26 26 C 1.39692 * 118.03555 * 359.51851 * 25 20 19 27 27 H 1.09007 * 109.47252 * 296.04603 * 1 2 3 28 28 H 1.09000 * 109.47067 * 56.04586 * 1 2 3 29 29 H 1.08994 * 109.47344 * 176.04828 * 1 2 3 30 30 H 1.08999 * 109.47065 * 53.94908 * 3 2 1 31 31 H 1.08996 * 109.46968 * 173.95548 * 3 2 1 32 32 H 0.96991 * 119.99883 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47308 * 306.04475 * 12 2 1 34 34 H 1.09005 * 109.47232 * 186.04436 * 12 2 1 35 35 H 1.07997 * 125.04041 * 0.03745 * 14 13 12 36 36 H 1.08002 * 119.21150 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.97930 * 179.72281 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3491 -1.5290 7 7 2.7129 4.0016 -0.6155 8 14 1.5838 4.1864 -3.1387 9 1 0.2717 4.8673 -2.9972 10 1 2.6264 5.1871 -3.4801 11 1 1.5003 3.1704 -4.2185 12 6 1.9954 -0.7659 1.1376 13 6 1.6369 -2.2204 0.9729 14 6 0.6280 -2.8686 1.5761 15 7 0.6143 -4.1797 1.1818 16 1 -0.0239 -4.8447 1.4841 17 6 1.6374 -4.4151 0.2950 18 7 2.0407 -5.4962 -0.3594 19 6 3.0749 -5.4659 -1.1724 20 6 3.7967 -4.3013 -1.3861 21 6 4.9770 -4.2997 -2.3233 22 9 5.1501 -5.5811 -2.8574 23 9 4.7473 -3.3897 -3.3607 24 9 6.1286 -3.9267 -1.6222 25 6 3.4275 -3.1436 -0.7281 26 6 2.3233 -3.1973 0.1259 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0251 -0.0708 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 2.9874 4.9176 -0.7775 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 -0.0694 -2.4221 2.2692 36 1 3.3687 -6.3697 -1.6855 37 1 3.9744 -2.2236 -0.8724 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139535062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:20 Heat of formation + Delta-G solvation = -72.631888 kcal Electronic energy + Delta-G solvation = -25697.054953 eV Core-core repulsion = 21446.211551 eV Total energy + Delta-G solvation = -4250.843402 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.11431 -47.66552 -47.53629 -41.71798 -38.22186 -36.52956 -33.46762 -32.54939 -31.13662 -29.87171 -27.16438 -26.65481 -25.86574 -24.05061 -23.53601 -22.14660 -20.67113 -19.52124 -18.74110 -18.42336 -18.02159 -17.87419 -16.74427 -16.28643 -15.64120 -15.36145 -14.78299 -14.45726 -14.38983 -14.24159 -14.01956 -13.91128 -13.81136 -13.75646 -13.72399 -13.49407 -13.21051 -13.05389 -12.45295 -12.26461 -11.98705 -11.79334 -11.36498 -11.10940 -10.88929 -10.71093 -10.49065 -10.44224 -9.89158 -9.64435 -9.23750 -8.74809 -8.45177 -8.06364 -7.26272 -6.03714 -4.04840 0.80890 0.93883 2.51859 2.56888 2.75046 3.31685 3.38393 3.43234 3.55809 3.74561 4.00479 4.34990 4.43004 4.47035 4.62959 4.63484 4.78444 5.08697 5.21318 5.30995 5.34781 5.42135 5.70913 5.85198 6.00128 6.06370 6.18758 6.19784 6.29013 6.47274 6.72528 6.78062 7.10334 7.25575 7.30582 7.75966 7.78766 8.05785 8.17171 8.52284 9.02847 9.59602 11.07082 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.004266 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.118669 B = 6561.731069 C = 8222.581926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.118 3.882 13 C -0.116 4.116 14 C 0.051 3.949 15 N -0.576 5.576 16 H 0.420 0.580 17 C 0.304 3.696 18 N -0.498 5.498 19 C 0.181 3.819 20 C -0.278 4.278 21 C 0.522 3.478 22 F -0.180 7.180 23 F -0.173 7.173 24 F -0.177 7.177 25 C 0.049 3.951 26 C -0.136 4.136 27 H 0.010 0.990 28 H 0.073 0.927 29 H 0.044 0.956 30 H -0.008 1.008 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -18.751 3.507 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.260 5.260 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.010 4.010 13 C -0.123 4.123 14 C -0.074 4.074 15 N -0.182 5.182 16 H 0.258 0.742 17 C 0.070 3.930 18 N -0.211 5.211 19 C 0.013 3.987 20 C -0.284 4.284 21 C 0.467 3.533 22 F -0.162 7.162 23 F -0.154 7.154 24 F -0.159 7.159 25 C 0.023 3.977 26 C -0.144 4.144 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.187 0.813 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.874 -19.572 3.344 19.874 hybrid contribution -0.192 1.430 -0.251 1.464 sum -1.067 -18.142 3.093 18.434 Atomic orbital electron populations 1.22200 0.88924 0.99446 1.00409 1.62113 1.07032 1.17579 1.39232 1.19752 0.95426 0.81312 0.96718 1.21148 1.34804 0.96870 1.01679 0.91883 1.24973 0.95264 0.97357 0.96937 1.69950 1.38350 1.11444 1.34105 0.86519 0.77968 0.79263 0.83833 1.20786 1.21234 1.19749 1.20445 1.00437 0.86978 0.93181 1.20398 0.96937 0.95695 0.99300 1.21751 1.00902 0.82094 1.02679 1.41511 1.27175 1.10830 1.38712 0.74189 1.18526 0.90598 0.90711 0.93174 1.66620 1.15841 1.28594 1.10003 1.22194 0.88118 0.96403 0.91935 1.20602 1.02030 0.98386 1.07391 1.17959 0.82499 0.73443 0.79401 1.93139 1.95923 1.39725 1.87375 1.93257 1.94501 1.67360 1.60289 1.93219 1.52582 1.91340 1.78728 1.20802 0.91961 0.96879 0.88015 1.19576 0.98311 0.94402 1.02091 0.97168 0.90828 0.93766 0.99060 0.95136 0.92926 0.94647 0.90316 0.80379 0.81268 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.17 60.06 0.55 1.27 16 2 N -0.54 -10.96 4.74 -245.82 -1.17 -12.12 16 3 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 4 C -0.51 -13.95 8.46 -34.44 -0.29 -14.24 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.12 1.96 5.50 -4.97 -0.03 1.93 16 13 C -0.12 -1.66 4.92 -102.75 -0.51 -2.16 16 14 C 0.05 0.56 11.07 -16.69 -0.18 0.37 16 15 N -0.58 -6.07 6.05 -12.15 -0.07 -6.14 16 16 H 0.42 3.08 8.96 -40.82 -0.37 2.72 16 17 C 0.30 4.11 8.43 -155.70 -1.31 2.80 16 18 N -0.50 -6.63 10.39 -12.27 -0.13 -6.75 16 19 C 0.18 2.18 10.57 -17.50 -0.18 2.00 16 20 C -0.28 -3.61 5.38 -104.47 -0.56 -4.17 16 21 C 0.52 6.54 3.33 36.01 0.12 6.66 16 22 F -0.18 -2.03 15.98 2.25 0.04 -2.00 16 23 F -0.17 -2.44 17.25 2.25 0.04 -2.40 16 24 F -0.18 -2.30 17.24 2.25 0.04 -2.26 16 25 C 0.05 0.71 9.80 -39.05 -0.38 0.33 16 26 C -0.14 -2.02 6.37 -105.11 -0.67 -2.68 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 29 H 0.04 0.71 6.77 -51.93 -0.35 0.36 16 30 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.17 1.56 7.14 -52.49 -0.37 1.18 16 37 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -31.17 330.39 -8.02 -39.18 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -3.89 Total: -1.78 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.57 Total: -1.62 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.63 Total: -50.59 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.17 -8.02 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139535062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.448 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds