Wall clock time and date at job start Tue Mar 31 2020 10:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00187 * 2 1 4 4 C 1.50701 * 109.46759 * 293.95593 * 3 2 1 5 5 H 1.07999 * 120.00547 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99925 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99937 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00108 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46918 * 89.99673 * 8 6 4 10 10 H 1.48493 * 109.47144 * 209.99583 * 8 6 4 11 11 H 1.48500 * 109.46896 * 330.00006 * 8 6 4 12 12 C 1.46900 * 111.00065 * 123.95183 * 2 1 3 13 13 C 1.50702 * 109.47113 * 66.04654 * 12 2 1 14 14 C 1.34229 * 126.56597 * 259.97628 * 13 12 2 15 15 N 1.36919 * 109.91048 * 180.02562 * 14 13 12 16 16 H 0.97002 * 124.97959 * 180.02562 * 15 14 13 17 17 C 1.37419 * 110.02427 * 0.02562 * 15 14 13 18 18 N 1.32652 * 133.18318 * 179.97438 * 17 15 14 19 19 C 1.31587 * 121.66949 * 180.02562 * 18 17 15 20 20 C 1.38669 * 121.57976 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.29050 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47293 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.46957 * 120.00190 * 21 20 19 24 24 F 1.39898 * 109.46958 * 239.99851 * 21 20 19 25 25 C 1.38196 * 119.41382 * 0.22960 * 20 19 18 26 26 C 1.39692 * 118.03555 * 359.51851 * 25 20 19 27 27 H 1.09007 * 109.47252 * 296.04603 * 1 2 3 28 28 H 1.09000 * 109.47067 * 56.04586 * 1 2 3 29 29 H 1.08994 * 109.47344 * 176.04828 * 1 2 3 30 30 H 1.08999 * 109.47065 * 53.94908 * 3 2 1 31 31 H 1.08996 * 109.46968 * 173.95548 * 3 2 1 32 32 H 0.96991 * 119.99883 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47308 * 306.04475 * 12 2 1 34 34 H 1.09005 * 109.47232 * 186.04436 * 12 2 1 35 35 H 1.07997 * 125.04041 * 0.03745 * 14 13 12 36 36 H 1.08002 * 119.21150 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.97930 * 179.72281 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3491 -1.5290 7 7 2.7129 4.0016 -0.6155 8 14 1.5838 4.1864 -3.1387 9 1 0.2717 4.8673 -2.9972 10 1 2.6264 5.1871 -3.4801 11 1 1.5003 3.1704 -4.2185 12 6 1.9954 -0.7659 1.1376 13 6 1.6369 -2.2204 0.9729 14 6 0.6280 -2.8686 1.5761 15 7 0.6143 -4.1797 1.1818 16 1 -0.0239 -4.8447 1.4841 17 6 1.6374 -4.4151 0.2950 18 7 2.0407 -5.4962 -0.3594 19 6 3.0749 -5.4659 -1.1724 20 6 3.7967 -4.3013 -1.3861 21 6 4.9770 -4.2997 -2.3233 22 9 5.1501 -5.5811 -2.8574 23 9 4.7473 -3.3897 -3.3607 24 9 6.1286 -3.9267 -1.6222 25 6 3.4275 -3.1436 -0.7281 26 6 2.3233 -3.1973 0.1259 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3634 -1.0251 -0.0708 30 1 1.5611 1.9274 0.8309 31 1 3.0797 1.3444 0.1082 32 1 2.9874 4.9176 -0.7775 33 1 1.5611 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 -0.0694 -2.4221 2.2692 36 1 3.3687 -6.3697 -1.6855 37 1 3.9744 -2.2236 -0.8724 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139535062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:20 Heat of formation + Delta-G solvation = -91.952021 kcal Electronic energy + Delta-G solvation = -25697.892737 eV Core-core repulsion = 21446.211551 eV Total energy + Delta-G solvation = -4251.681186 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.14719 -48.66301 -48.61379 -42.70516 -39.24976 -38.07109 -34.88278 -34.24387 -32.25612 -31.01820 -29.03108 -27.99750 -26.92192 -25.53436 -24.80510 -23.15663 -22.36548 -20.61282 -19.77489 -19.46980 -19.07126 -18.90434 -18.36326 -17.67159 -16.83540 -16.67553 -16.30521 -15.74091 -15.59827 -15.46200 -15.34308 -15.14993 -15.05030 -14.83049 -14.77408 -14.70529 -14.25596 -14.09577 -13.94817 -13.50544 -13.44954 -13.21474 -12.98558 -12.74302 -12.59604 -12.41292 -12.24061 -11.80866 -11.57225 -11.28080 -10.66485 -10.58982 -9.73938 -9.12270 -8.86003 -8.17864 -6.27141 -0.24998 -0.03940 1.41242 1.42958 1.52990 1.55705 1.56930 1.78292 2.42033 2.52978 2.72828 2.99849 3.14717 3.42891 3.45039 3.49664 3.62675 3.72539 3.79262 4.19374 4.31086 4.39520 4.55547 4.66351 4.72326 4.79379 4.85050 5.01627 5.13140 5.16062 5.24682 5.36149 5.39859 5.68019 5.77486 6.09372 6.26080 6.40013 6.69869 6.82199 6.89605 7.42420 8.92516 Molecular weight = 313.11amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.004266 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.118669 B = 6561.731069 C = 8222.581926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.547 5.547 3 C 0.209 3.791 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.125 3.875 13 C -0.157 4.157 14 C 0.091 3.909 15 N -0.559 5.559 16 H 0.439 0.561 17 C 0.293 3.707 18 N -0.501 5.501 19 C 0.182 3.818 20 C -0.276 4.276 21 C 0.527 3.473 22 F -0.169 7.169 23 F -0.184 7.184 24 F -0.181 7.181 25 C 0.027 3.973 26 C -0.155 4.155 27 H 0.019 0.981 28 H 0.049 0.951 29 H 0.073 0.927 30 H -0.032 1.032 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.219 0.781 36 H 0.199 0.801 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -20.458 3.567 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.271 5.271 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.574 5.574 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.003 4.003 13 C -0.164 4.164 14 C -0.036 4.036 15 N -0.166 5.166 16 H 0.280 0.720 17 C 0.059 3.941 18 N -0.213 5.213 19 C 0.015 3.985 20 C -0.281 4.281 21 C 0.472 3.528 22 F -0.150 7.150 23 F -0.165 7.165 24 F -0.163 7.163 25 C 0.001 3.999 26 C -0.163 4.163 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.091 0.909 30 H -0.014 1.014 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.236 0.764 36 H 0.216 0.784 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.552 -21.327 3.413 21.748 hybrid contribution 0.324 1.870 -0.212 1.910 sum -2.227 -19.457 3.200 19.843 Atomic orbital electron populations 1.22140 0.87514 1.00854 0.99776 1.61988 1.08367 1.14854 1.41905 1.19369 0.93694 0.83775 0.94931 1.21458 1.34599 0.97356 1.02471 0.92286 1.25830 0.95098 0.98096 1.00362 1.70068 1.39390 1.11844 1.36072 0.85472 0.78022 0.78127 0.79554 1.19683 1.20818 1.19344 1.20308 0.99506 0.88258 0.92183 1.20125 0.99531 0.94470 1.02293 1.22253 0.99164 0.81629 1.00523 1.41539 1.26508 1.11138 1.37418 0.71957 1.18699 0.91301 0.90277 0.93861 1.66719 1.16109 1.28351 1.10165 1.22652 0.87464 0.96902 0.91522 1.20641 1.02090 0.98341 1.07040 1.17882 0.82306 0.73564 0.79056 1.93157 1.95861 1.38827 1.87203 1.93234 1.94568 1.67934 1.60803 1.93211 1.52796 1.91446 1.78807 1.20807 0.92721 0.97030 0.89344 1.19790 0.98641 0.95432 1.02407 0.96236 0.93245 0.90869 1.01446 0.97853 0.92744 0.93274 0.91901 0.76421 0.78427 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.64 9.17 127.69 1.17 2.81 16 2 N -0.55 -22.69 4.74 -931.65 -4.42 -27.11 16 3 C 0.21 10.86 4.72 85.56 0.40 11.26 16 4 C -0.52 -29.34 8.46 25.60 0.22 -29.13 16 5 H 0.06 3.31 7.12 -2.91 -0.02 3.28 16 6 C 0.00 0.24 5.46 84.66 0.46 0.70 16 7 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.13 4.16 5.50 85.56 0.47 4.63 16 13 C -0.16 -4.26 4.92 -18.65 -0.09 -4.35 16 14 C 0.09 1.67 11.07 82.98 0.92 2.59 16 15 N -0.56 -9.82 6.05 -192.34 -1.16 -10.98 16 16 H 0.44 4.61 8.96 -92.71 -0.83 3.78 16 17 C 0.29 7.31 8.43 133.93 1.13 8.44 16 18 N -0.50 -12.26 10.39 -192.74 -2.00 -14.27 16 19 C 0.18 4.08 10.57 84.83 0.90 4.98 16 20 C -0.28 -7.04 5.38 -19.77 -0.11 -7.15 16 21 C 0.53 13.04 3.33 71.24 0.24 13.28 16 22 F -0.17 -3.59 15.98 44.97 0.72 -2.87 16 23 F -0.18 -5.24 17.25 44.97 0.78 -4.47 16 24 F -0.18 -4.73 17.24 44.97 0.78 -3.96 16 25 C 0.03 0.80 9.80 22.61 0.22 1.02 16 26 C -0.16 -4.49 6.37 -20.18 -0.13 -4.62 16 27 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.05 2.00 6.76 -2.39 -0.02 1.99 16 29 H 0.07 2.19 6.77 -2.39 -0.02 2.18 16 30 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 31 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 32 H 0.26 14.86 8.31 -92.72 -0.77 14.09 16 33 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 34 H 0.06 2.23 7.93 -2.38 -0.02 2.21 16 35 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.20 3.13 7.14 -2.91 -0.02 3.11 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -68.56 330.39 3.10 -65.47 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.30 Total: 2.74 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.80 Total: 4.47 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -7.30 Total: -107.87 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 2.27 Total: -11.29 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.56 3.10 -65.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139535062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.485 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds