Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35914 * 116.99909 * 2 1 4 4 C 1.38914 * 120.40367 * 0.02562 * 3 2 1 5 5 C 1.38529 * 118.53633 * 180.22826 * 4 3 2 6 6 C 1.39205 * 119.27018 * 359.52058 * 5 4 3 7 7 C 1.48299 * 119.62589 * 180.25736 * 6 5 4 8 8 C 1.39359 * 119.72363 * 180.23345 * 7 6 5 9 9 C 1.38410 * 119.06420 * 179.97438 * 8 7 6 10 10 C 1.38774 * 118.50996 * 359.97438 * 9 8 7 11 11 C 1.38270 * 119.37145 * 0.02562 * 10 9 8 12 12 N 1.31738 * 120.89643 * 359.74030 * 11 10 9 13 13 N 1.32776 * 120.73900 * 0.48187 * 6 5 4 14 14 C 1.32085 * 121.58902 * 359.75122 * 13 6 5 15 15 N 1.39552 * 119.66481 * 179.97438 * 14 13 6 16 16 C 1.34772 * 120.00477 * 0.02562 * 15 14 13 17 17 O 1.21286 * 119.99747 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00254 * 180.02562 * 16 15 14 19 19 C 1.50699 * 109.47005 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99952 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99947 * 179.97438 * 19 18 16 22 22 N 1.31509 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46856 * 90.00154 * 23 21 19 25 25 H 1.48500 * 109.46865 * 210.00020 * 23 21 19 26 26 H 1.48498 * 109.47014 * 330.00307 * 23 21 19 27 27 H 1.08998 * 109.47113 * 299.99687 * 1 2 3 28 28 H 1.08998 * 109.47156 * 59.99324 * 1 2 3 29 29 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.72624 * 359.94372 * 4 3 2 31 31 H 1.08001 * 120.36238 * 179.72393 * 5 4 3 32 32 H 1.08001 * 120.46895 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.73965 * 180.02562 * 9 8 7 34 34 H 1.08003 * 120.31206 * 180.02562 * 10 9 8 35 35 H 1.08006 * 119.55367 * 179.97438 * 11 10 9 36 36 H 0.97006 * 120.00006 * 180.02562 * 15 14 13 37 37 H 1.08996 * 109.46526 * 299.99508 * 18 16 15 38 38 H 1.08991 * 109.47064 * 59.99625 * 18 16 15 39 39 H 0.97001 * 120.00083 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2976 2.3813 0.0005 5 6 1.9664 3.5945 -0.0043 6 6 3.3584 3.6043 0.0006 7 6 4.0824 4.8986 0.0012 8 6 5.4759 4.9108 0.0012 9 6 6.1376 6.1265 0.0013 10 6 5.3833 7.2913 0.0008 11 6 4.0032 7.2055 0.0008 12 7 3.3982 6.0353 -0.0038 13 7 4.0451 2.4680 0.0002 14 6 3.4400 1.2939 0.0001 15 7 4.2014 0.1244 -0.0008 16 6 5.5472 0.1964 -0.0010 17 8 6.0966 1.2777 -0.0009 18 6 6.3695 -1.0665 -0.0026 19 6 7.8342 -0.7122 -0.0019 20 1 8.1392 0.3238 -0.0009 21 6 8.7850 -1.7108 -0.0026 22 7 8.4136 -2.9723 -0.0033 23 14 10.6007 -1.2716 -0.0025 24 1 11.0819 -1.1561 1.3977 25 1 11.3667 -2.3334 -0.7032 26 1 10.7967 0.0237 -0.7018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2182 2.3461 0.0000 31 1 1.4138 4.5224 -0.0086 32 1 6.0317 3.9848 0.0011 33 1 7.2169 6.1676 0.0008 34 1 5.8695 8.2557 0.0004 35 1 3.4132 8.1102 0.0009 36 1 3.7621 -0.7405 -0.0012 37 1 6.1373 -1.6521 0.8869 38 1 6.1368 -1.6503 -0.8930 39 1 9.0824 -3.6748 -0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = 13.935790 kcal Electronic energy + Delta-G solvation = -24841.876520 eV Core-core repulsion = 21136.643715 eV Total energy + Delta-G solvation = -3705.232805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95552 -39.90190 -38.69755 -37.79954 -34.40099 -32.93906 -32.53685 -32.25660 -31.24104 -29.51617 -28.53512 -27.42353 -24.46649 -24.13679 -23.42505 -22.35428 -21.67207 -19.68616 -18.41802 -17.78129 -16.93335 -16.62574 -16.19401 -16.04198 -15.69074 -15.43037 -15.26064 -14.66824 -14.41248 -14.16484 -14.12931 -14.07485 -13.55824 -13.22031 -13.14630 -12.81917 -12.54727 -12.10459 -11.64189 -11.59673 -11.58180 -11.35500 -10.79545 -10.73206 -10.32669 -9.99736 -9.88220 -9.85802 -9.52874 -9.37172 -9.29003 -8.84361 -8.43852 -8.40196 -7.49533 -6.06506 -4.06176 0.53485 1.33358 1.35593 1.69878 3.03278 3.31919 3.35221 3.40604 3.47386 3.48523 3.86502 3.95827 4.26842 4.47776 4.57493 4.73692 4.75501 4.87359 4.96904 5.03945 5.06081 5.14302 5.26204 5.29633 5.32174 5.38379 5.48122 5.85942 5.97334 6.02035 6.09599 6.24872 6.27547 6.44274 6.73403 6.78332 7.12596 7.29086 7.29572 7.67159 7.93427 7.95936 8.16841 8.45412 9.04167 9.16221 9.58867 11.05912 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004439 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.935603 B = 6305.610074 C = 9094.097813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.042 3.958 4 C -0.146 4.146 5 C -0.135 4.135 6 C 0.154 3.846 7 C 0.172 3.828 8 C -0.123 4.123 9 C -0.081 4.081 10 C -0.172 4.172 11 C 0.092 3.908 12 N -0.477 5.477 13 N -0.429 5.429 14 C 0.365 3.635 15 N -0.664 5.664 16 C 0.503 3.497 17 O -0.480 6.480 18 C 0.009 3.991 19 C -0.508 4.508 20 H 0.076 0.924 21 C 0.056 3.944 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.418 0.582 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 13.402 0.007 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C -0.009 4.009 4 C -0.172 4.172 5 C -0.158 4.158 6 C 0.018 3.982 7 C 0.036 3.964 8 C -0.143 4.143 9 C -0.107 4.107 10 C -0.192 4.192 11 C -0.066 4.066 12 N -0.187 5.187 13 N -0.146 5.146 14 C 0.128 3.872 15 N -0.313 5.313 16 C 0.293 3.707 17 O -0.349 6.349 18 C -0.031 4.031 19 C -0.546 4.546 20 H 0.094 0.906 21 C -0.145 4.145 22 N -0.540 5.540 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.213 1.213 26 H -0.196 1.196 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.855 13.727 -0.005 20.972 hybrid contribution 0.418 -0.206 0.014 0.466 sum -15.437 13.521 0.009 20.521 Atomic orbital electron populations 1.23065 0.78171 1.04137 1.01255 1.86028 1.21528 1.25783 1.89081 1.19613 0.91416 0.85787 1.04093 1.21381 1.00352 0.91241 1.04216 1.21770 0.94178 0.98425 1.01377 1.18972 0.89680 0.89745 0.99782 1.19185 0.90209 0.89909 0.97108 1.22535 0.94952 1.00405 0.96415 1.21667 1.00954 0.92087 0.96020 1.22196 0.95581 0.99445 1.02015 1.22577 0.92320 0.95039 0.96702 1.67405 1.41119 0.97886 1.12259 1.67571 1.37501 0.95643 1.13853 1.17960 0.84442 0.87618 0.97143 1.44336 1.07813 1.06172 1.72975 1.22386 0.79924 0.94325 0.74098 1.90589 1.69982 1.30664 1.43620 1.19272 0.94904 0.89140 0.99757 1.21136 0.88980 0.94191 1.50317 0.90558 1.24994 0.99543 0.94831 0.95160 1.69955 1.34029 0.98979 1.51018 0.86422 0.84313 0.78159 0.78158 1.20613 1.21285 1.19642 0.92651 0.92657 0.87992 0.84019 0.83683 0.82157 0.84530 0.84918 0.82688 0.74479 0.93168 0.93154 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.83 101.05 0.99 1.21 16 2 O -0.31 -3.87 9.73 -19.47 -0.19 -4.06 16 3 C 0.04 0.61 6.73 -38.81 -0.26 0.35 16 4 C -0.15 -1.79 9.12 -39.22 -0.36 -2.15 16 5 C -0.14 -1.86 9.60 -39.12 -0.38 -2.24 16 6 C 0.15 2.62 6.72 -82.96 -0.56 2.06 16 7 C 0.17 2.78 6.72 -82.95 -0.56 2.22 16 8 C -0.12 -1.98 9.61 -39.10 -0.38 -2.35 16 9 C -0.08 -1.03 10.17 -39.32 -0.40 -1.43 16 10 C -0.17 -1.81 10.11 -39.37 -0.40 -2.21 16 11 C 0.09 1.03 11.17 -17.58 -0.20 0.83 16 12 N -0.48 -6.72 9.39 -9.78 -0.09 -6.81 16 13 N -0.43 -8.37 6.90 -8.76 -0.06 -8.43 16 14 C 0.36 6.63 7.45 -154.56 -1.15 5.47 16 15 N -0.66 -12.52 5.39 -11.29 -0.06 -12.58 16 16 C 0.50 11.63 7.79 -10.99 -0.09 11.54 16 17 O -0.48 -12.34 13.66 5.55 0.08 -12.26 16 18 C 0.01 0.22 5.46 -29.03 -0.16 0.06 16 19 C -0.51 -14.55 8.92 -34.44 -0.31 -14.86 16 20 H 0.08 2.27 6.75 -52.49 -0.35 1.91 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 23 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.36 7.69 -51.93 -0.40 -0.04 16 28 H 0.05 0.36 7.69 -51.93 -0.40 -0.04 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.14 1.21 6.43 -52.49 -0.34 0.87 16 31 H 0.15 1.74 7.51 -52.49 -0.39 1.35 16 32 H 0.16 3.03 7.47 -52.49 -0.39 2.63 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.16 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.42 6.70 8.04 -40.82 -0.33 6.37 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -34.36 342.56 -8.01 -42.37 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.28 Total: 5.09 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.29 Total: 0.00 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.52 Total: -53.30 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.11 Total: -16.32 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.36 -8.01 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.309 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds