Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35914 * 116.99909 * 2 1 4 4 C 1.38914 * 120.40367 * 0.02562 * 3 2 1 5 5 C 1.38529 * 118.53633 * 180.22826 * 4 3 2 6 6 C 1.39205 * 119.27018 * 359.52058 * 5 4 3 7 7 C 1.48299 * 119.62589 * 180.25736 * 6 5 4 8 8 C 1.39359 * 119.72363 * 180.23345 * 7 6 5 9 9 C 1.38410 * 119.06420 * 179.97438 * 8 7 6 10 10 C 1.38774 * 118.50996 * 359.97438 * 9 8 7 11 11 C 1.38270 * 119.37145 * 0.02562 * 10 9 8 12 12 N 1.31738 * 120.89643 * 359.74030 * 11 10 9 13 13 N 1.32776 * 120.73900 * 0.48187 * 6 5 4 14 14 C 1.32085 * 121.58902 * 359.75122 * 13 6 5 15 15 N 1.39552 * 119.66481 * 179.97438 * 14 13 6 16 16 C 1.34772 * 120.00477 * 0.02562 * 15 14 13 17 17 O 1.21286 * 119.99747 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00254 * 180.02562 * 16 15 14 19 19 C 1.50699 * 109.47005 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99952 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99947 * 179.97438 * 19 18 16 22 22 N 1.31509 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46856 * 90.00154 * 23 21 19 25 25 H 1.48500 * 109.46865 * 210.00020 * 23 21 19 26 26 H 1.48498 * 109.47014 * 330.00307 * 23 21 19 27 27 H 1.08998 * 109.47113 * 299.99687 * 1 2 3 28 28 H 1.08998 * 109.47156 * 59.99324 * 1 2 3 29 29 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.72624 * 359.94372 * 4 3 2 31 31 H 1.08001 * 120.36238 * 179.72393 * 5 4 3 32 32 H 1.08001 * 120.46895 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.73965 * 180.02562 * 9 8 7 34 34 H 1.08003 * 120.31206 * 180.02562 * 10 9 8 35 35 H 1.08006 * 119.55367 * 179.97438 * 11 10 9 36 36 H 0.97006 * 120.00006 * 180.02562 * 15 14 13 37 37 H 1.08996 * 109.46526 * 299.99508 * 18 16 15 38 38 H 1.08991 * 109.47064 * 59.99625 * 18 16 15 39 39 H 0.97001 * 120.00083 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2976 2.3813 0.0005 5 6 1.9664 3.5945 -0.0043 6 6 3.3584 3.6043 0.0006 7 6 4.0824 4.8986 0.0012 8 6 5.4759 4.9108 0.0012 9 6 6.1376 6.1265 0.0013 10 6 5.3833 7.2913 0.0008 11 6 4.0032 7.2055 0.0008 12 7 3.3982 6.0353 -0.0038 13 7 4.0451 2.4680 0.0002 14 6 3.4400 1.2939 0.0001 15 7 4.2014 0.1244 -0.0008 16 6 5.5472 0.1964 -0.0010 17 8 6.0966 1.2777 -0.0009 18 6 6.3695 -1.0665 -0.0026 19 6 7.8342 -0.7122 -0.0019 20 1 8.1392 0.3238 -0.0009 21 6 8.7850 -1.7108 -0.0026 22 7 8.4136 -2.9723 -0.0033 23 14 10.6007 -1.2716 -0.0025 24 1 11.0819 -1.1561 1.3977 25 1 11.3667 -2.3334 -0.7032 26 1 10.7967 0.0237 -0.7018 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2182 2.3461 0.0000 31 1 1.4138 4.5224 -0.0086 32 1 6.0317 3.9848 0.0011 33 1 7.2169 6.1676 0.0008 34 1 5.8695 8.2557 0.0004 35 1 3.4132 8.1102 0.0009 36 1 3.7621 -0.7405 -0.0012 37 1 6.1373 -1.6521 0.8869 38 1 6.1368 -1.6503 -0.8930 39 1 9.0824 -3.6748 -0.0041 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = -9.172326 kcal Electronic energy + Delta-G solvation = -24842.878563 eV Core-core repulsion = 21136.643715 eV Total energy + Delta-G solvation = -3706.234848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15122 -40.94743 -40.18451 -38.96363 -35.92902 -35.10037 -33.58049 -33.30620 -32.51183 -31.10490 -29.98808 -28.24761 -26.21218 -25.17632 -24.72546 -23.65003 -22.79859 -21.28355 -19.59427 -18.81064 -18.55661 -18.07710 -17.69417 -17.05634 -17.03358 -16.66362 -16.41901 -16.29493 -16.10439 -15.31348 -15.24566 -15.16454 -14.79192 -14.41569 -14.39187 -14.18913 -14.11866 -13.49860 -13.27700 -12.81623 -12.62063 -12.61623 -12.38521 -12.37943 -12.04816 -11.84293 -11.47059 -11.25963 -10.86020 -10.63383 -10.57743 -10.52219 -10.04502 -9.99998 -8.70585 -8.25983 -6.33174 -0.54148 0.16845 0.33118 0.63759 1.39558 1.40671 1.53067 1.87838 1.94462 2.11988 2.42383 2.62027 2.82822 3.09001 3.11396 3.57006 3.74194 3.80882 3.91112 4.03061 4.18093 4.22434 4.28707 4.40681 4.46073 4.48619 4.53057 4.78890 4.86096 4.93884 4.99499 5.05422 5.12000 5.22315 5.26378 5.33397 5.48722 5.72412 5.77009 5.98948 6.20231 6.37177 6.77967 6.90395 7.05544 7.32219 7.48953 8.86412 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004439 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.935603 B = 6305.610074 C = 9094.097813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.059 3.941 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.123 3.877 7 C 0.150 3.850 8 C -0.157 4.157 9 C -0.086 4.086 10 C -0.156 4.156 11 C 0.094 3.906 12 N -0.484 5.484 13 N -0.468 5.468 14 C 0.320 3.680 15 N -0.654 5.654 16 C 0.508 3.492 17 O -0.516 6.516 18 C 0.014 3.986 19 C -0.535 4.535 20 H 0.056 0.944 21 C 0.012 3.988 22 N -0.924 5.924 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.190 0.810 31 H 0.168 0.832 32 H 0.117 0.883 33 H 0.152 0.848 34 H 0.177 0.823 35 H 0.200 0.800 36 H 0.429 0.571 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.748 15.574 0.027 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.007 3.993 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.013 4.013 7 C 0.015 3.985 8 C -0.177 4.177 9 C -0.112 4.112 10 C -0.175 4.175 11 C -0.065 4.065 12 N -0.195 5.195 13 N -0.185 5.185 14 C 0.085 3.915 15 N -0.303 5.303 16 C 0.296 3.704 17 O -0.387 6.387 18 C -0.025 4.025 19 C -0.573 4.573 20 H 0.074 0.926 21 C -0.187 4.187 22 N -0.564 5.564 23 Si 0.790 3.210 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.207 0.793 31 H 0.186 0.814 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.194 0.806 35 H 0.216 0.784 36 H 0.268 0.732 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.133 15.873 0.016 24.099 hybrid contribution 0.924 -0.782 0.008 1.210 sum -17.209 15.092 0.024 22.889 Atomic orbital electron populations 1.23495 0.75277 1.06202 1.02900 1.86035 1.24408 1.24767 1.88546 1.19518 0.90068 0.87429 1.02267 1.21848 1.02367 0.89493 1.02090 1.22069 0.92915 1.00034 0.98936 1.19343 0.91276 0.89384 1.01271 1.19224 0.90146 0.90633 0.98503 1.22311 0.95481 1.00222 0.99731 1.21921 1.02014 0.91751 0.95495 1.22636 0.95393 1.00135 0.99373 1.23414 0.93282 0.95353 0.94407 1.67454 1.41139 0.98029 1.12857 1.67381 1.39703 0.96880 1.14493 1.18130 0.86042 0.86854 1.00470 1.43800 1.06382 1.07519 1.72621 1.21853 0.81439 0.92911 0.74166 1.90582 1.71212 1.31324 1.45625 1.19078 0.94162 0.90154 0.99112 1.21324 0.91141 0.93512 1.51334 0.92573 1.25770 1.03835 0.94682 0.94421 1.70029 1.35582 0.99675 1.51080 0.85449 0.79072 0.77963 0.78565 1.19674 1.19776 1.19933 0.90903 0.90910 0.85983 0.79259 0.81414 0.86493 0.83071 0.80592 0.78358 0.73185 0.93693 0.93682 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 113.37 1.11 1.29 16 2 O -0.32 -7.51 9.73 -92.58 -0.90 -8.41 16 3 C 0.06 1.65 6.73 22.77 0.15 1.80 16 4 C -0.13 -2.89 9.12 22.50 0.21 -2.68 16 5 C -0.12 -3.08 9.60 22.57 0.22 -2.86 16 6 C 0.12 4.33 6.72 41.91 0.28 4.61 16 7 C 0.15 5.01 6.72 41.97 0.28 5.29 16 8 C -0.16 -5.45 9.61 22.58 0.22 -5.23 16 9 C -0.09 -2.19 10.17 22.44 0.23 -1.96 16 10 C -0.16 -2.83 10.11 22.41 0.23 -2.61 16 11 C 0.09 1.81 11.17 84.71 0.95 2.76 16 12 N -0.48 -13.01 9.39 -184.86 -1.74 -14.74 16 13 N -0.47 -19.54 6.90 -181.63 -1.25 -20.79 16 14 C 0.32 12.13 7.45 133.09 0.99 13.12 16 15 N -0.65 -26.16 5.39 -308.04 -1.66 -27.82 16 16 C 0.51 25.21 7.79 87.66 0.68 25.90 16 17 O -0.52 -28.86 13.66 -3.05 -0.04 -28.90 16 18 C 0.01 0.78 5.46 29.10 0.16 0.93 16 19 C -0.53 -32.21 8.92 25.60 0.23 -31.98 16 20 H 0.06 3.55 6.75 -2.91 -0.02 3.53 16 21 C 0.01 0.68 5.46 84.66 0.46 1.14 16 22 N -0.92 -54.75 13.29 21.45 0.28 -54.47 16 23 Si 0.96 46.08 29.54 68.60 2.03 48.10 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 27 H 0.07 0.64 7.69 -2.39 -0.02 0.62 16 28 H 0.07 0.64 7.69 -2.39 -0.02 0.62 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.19 2.26 6.43 -2.91 -0.02 2.24 16 31 H 0.17 3.56 7.51 -2.91 -0.02 3.54 16 32 H 0.12 5.05 7.47 -2.91 -0.02 5.03 16 33 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.20 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.43 14.48 8.04 -92.70 -0.75 13.74 16 37 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -80.89 342.56 3.47 -77.42 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.36 Total: 20.11 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.39 Total: 9.51 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.36 Total: -117.83 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.94 Total: -37.31 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.89 3.47 -77.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.248 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds