Wall clock time and date at job start Tue Mar 31 2020 10:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34754 * 116.99863 * 2 1 4 4 O 1.21513 * 120.00334 * 0.02562 * 3 2 1 5 5 C 1.47413 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.40210 * 120.87631 * 179.97438 * 5 3 2 7 7 N 1.31916 * 119.00324 * 180.02562 * 6 5 3 8 8 C 1.32716 * 120.90225 * 359.97438 * 7 6 5 9 9 N 1.37992 * 119.03014 * 179.97438 * 8 7 6 10 10 C 1.36902 * 119.99749 * 353.97913 * 9 8 7 11 11 H 1.08006 * 119.99108 * 132.58815 * 10 9 8 12 12 C 1.38912 * 120.00350 * 312.58788 * 10 9 8 13 13 N 1.31480 * 119.99811 * 162.59212 * 12 10 9 14 14 Si 1.86793 * 120.00071 * 342.59436 * 12 10 9 15 15 H 1.48502 * 109.47507 * 93.86647 * 14 12 10 16 16 H 1.48504 * 109.47050 * 213.86606 * 14 12 10 17 17 H 1.48500 * 109.47424 * 333.86777 * 14 12 10 18 18 C 1.46499 * 119.99573 * 173.98350 * 9 8 7 19 19 C 1.50696 * 109.47376 * 269.99572 * 18 9 8 20 20 C 1.38230 * 120.00188 * 269.73526 * 19 18 9 21 21 C 1.38241 * 119.99914 * 179.76506 * 20 19 18 22 22 C 1.38230 * 119.99985 * 0.50105 * 21 20 19 23 23 C 1.38234 * 119.99964 * 359.74874 * 22 21 20 24 24 C 1.38233 * 120.00152 * 359.97438 * 23 22 21 25 25 N 1.32715 * 121.93802 * 0.25802 * 8 7 6 26 26 C 1.31919 * 120.90301 * 359.47551 * 25 8 7 27 27 H 1.09004 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47188 * 299.99783 * 1 2 3 29 29 H 1.09006 * 109.47332 * 60.00075 * 1 2 3 30 30 H 1.08004 * 120.50332 * 359.97438 * 6 5 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47099 * 29.99960 * 18 9 8 33 33 H 1.09003 * 109.46937 * 149.99748 * 18 9 8 34 34 H 1.08001 * 120.00064 * 359.97438 * 20 19 18 35 35 H 1.07998 * 119.99851 * 180.23220 * 21 20 19 36 36 H 1.07998 * 119.99954 * 179.72835 * 22 21 20 37 37 H 1.07999 * 120.00062 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.00188 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.50085 * 180.23023 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.1913 2.5173 -0.0011 7 7 5.5103 2.5433 -0.0021 8 6 6.2141 1.4182 -0.0021 9 7 7.5922 1.4904 -0.0038 10 6 8.2138 2.7036 -0.1297 11 1 9.0200 2.9691 0.5383 12 6 7.8078 3.5931 -1.1165 13 7 8.1443 4.8616 -1.0369 14 14 6.7838 2.9869 -2.5563 15 1 5.3425 3.1785 -2.2541 16 1 7.1403 3.7558 -3.7757 17 1 7.0543 1.5446 -2.7838 18 6 8.3898 0.2688 0.1292 19 6 8.6572 -0.0004 1.5876 20 6 9.7868 0.5202 2.1908 21 6 10.0296 0.2773 3.5298 22 6 9.1481 -0.4947 4.2631 23 6 8.0211 -1.0196 3.6587 24 6 7.7754 -0.7720 2.3211 25 7 5.6317 0.2256 -0.0062 26 6 4.3173 0.1136 -0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.6251 3.4370 -0.0015 31 1 7.8611 5.4826 -1.7262 32 1 7.8433 -0.5706 -0.3010 33 1 9.3363 0.3939 -0.3967 34 1 10.4780 1.1195 1.6167 35 1 10.9102 0.6872 4.0020 36 1 9.3400 -0.6881 5.3082 37 1 7.3326 -1.6232 4.2315 38 1 6.8951 -1.1824 1.8487 39 1 3.8502 -0.8602 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166994063.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:55 Heat of formation + Delta-G solvation = 18.648201 kcal Electronic energy + Delta-G solvation = -25595.062612 eV Core-core repulsion = 21890.034152 eV Total energy + Delta-G solvation = -3705.028460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45525 -39.56788 -38.82776 -36.42061 -35.91631 -33.18151 -32.42021 -31.62089 -30.56771 -30.24732 -27.52427 -26.45190 -25.02352 -23.45010 -22.53474 -22.20985 -21.07650 -20.41106 -18.62304 -17.63916 -16.79805 -16.70602 -16.16765 -16.00992 -15.71804 -15.29827 -14.88211 -14.69936 -14.08897 -13.93167 -13.63399 -13.33930 -13.12666 -13.02912 -12.84073 -12.68865 -12.64038 -12.11457 -11.99377 -11.57466 -11.32471 -11.17014 -10.96070 -10.79513 -10.60462 -10.56926 -10.24034 -9.91208 -9.71524 -9.56849 -8.89415 -8.58282 -8.49285 -8.17305 -7.35892 -6.63829 -4.27705 1.28806 1.63961 1.74040 2.05202 3.05626 3.09784 3.18591 3.22292 3.27477 3.71813 4.11905 4.22639 4.61976 4.88881 5.00263 5.17680 5.20036 5.20423 5.27018 5.29535 5.31896 5.32866 5.48370 5.56804 5.61686 5.72849 5.84593 5.91124 5.99130 6.19042 6.33028 6.39503 6.44112 6.67022 6.77101 6.79332 6.89878 7.04853 7.32761 7.44840 7.59014 7.82710 8.21178 8.29309 8.72119 8.93272 9.36929 10.40354 Molecular weight = 313.12amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.005702 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.928415 B = 4909.650829 C = 6847.451723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.364 6.364 3 C 0.531 3.469 4 O -0.535 6.535 5 C -0.372 4.372 6 C 0.257 3.743 7 N -0.540 5.540 8 C 0.506 3.494 9 N -0.382 5.382 10 C -0.321 4.321 11 H 0.110 0.890 12 C 0.106 3.894 13 N -0.833 5.833 14 Si 0.887 3.113 15 H -0.259 1.259 16 H -0.289 1.289 17 H -0.272 1.272 18 C 0.148 3.852 19 C -0.090 4.090 20 C -0.097 4.097 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.097 4.097 25 N -0.593 5.593 26 C 0.250 3.750 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.160 0.840 31 H 0.281 0.719 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -11.462 3.922 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.281 6.281 3 C 0.378 3.622 4 O -0.426 6.426 5 C -0.386 4.386 6 C 0.080 3.920 7 N -0.261 5.261 8 C 0.157 3.843 9 N -0.072 5.072 10 C -0.449 4.449 11 H 0.127 0.873 12 C -0.108 4.108 13 N -0.464 5.464 14 Si 0.714 3.286 15 H -0.184 1.184 16 H -0.216 1.216 17 H -0.196 1.196 18 C 0.025 3.975 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.116 4.116 25 N -0.318 5.318 26 C 0.074 3.926 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.177 0.823 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.400 -10.865 3.823 11.766 hybrid contribution -1.803 0.036 -0.673 1.925 sum -4.204 -10.829 3.150 12.036 Atomic orbital electron populations 1.23129 0.77175 1.02945 1.02208 1.86534 1.22618 1.33662 1.85279 1.20777 0.88551 0.80804 0.72030 1.90769 1.66902 1.35984 1.48921 1.19898 0.89927 0.97605 1.31146 1.22866 0.89113 0.96122 0.83936 1.68169 1.06352 1.29581 1.22032 1.19696 0.87880 0.84443 0.92279 1.42387 0.98728 1.07155 1.58885 1.19076 1.18766 0.90316 1.16696 0.87285 1.25332 0.93763 0.94306 0.97376 1.69744 1.41339 1.01997 1.33283 0.86716 0.82128 0.79129 0.80614 1.18380 1.21608 1.19648 1.20716 0.96567 0.88297 0.91870 1.20269 0.94772 0.97179 0.96883 1.21145 0.97311 0.98232 0.94857 1.21078 0.99696 0.99415 0.94456 1.21064 0.95263 0.98664 0.99364 1.21087 0.97652 1.00958 0.95160 1.21218 0.98738 0.97665 0.93937 1.67842 1.11665 1.26313 1.25970 1.22915 0.88086 0.97434 0.84187 0.88621 0.92273 0.92325 0.82274 0.90895 0.89146 0.89316 0.85830 0.86496 0.86757 0.86642 0.85455 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.41 9.91 -40.64 -0.40 -5.81 16 3 C 0.53 9.54 7.90 34.47 0.27 9.81 16 4 O -0.53 -10.66 16.23 -19.28 -0.31 -10.98 16 5 C -0.37 -7.15 5.91 -104.67 -0.62 -7.77 16 6 C 0.26 5.54 10.11 -16.78 -0.17 5.37 16 7 N -0.54 -13.02 6.30 -13.60 -0.09 -13.11 16 8 C 0.51 11.63 6.11 -322.83 -1.97 9.65 16 9 N -0.38 -8.68 2.11 -118.37 -0.25 -8.93 16 10 C -0.32 -8.14 9.54 -15.04 -0.14 -8.28 16 11 H 0.11 2.89 8.06 -52.48 -0.42 2.47 16 12 C 0.11 2.79 4.80 -17.45 -0.08 2.70 16 13 N -0.83 -22.73 13.96 55.49 0.77 -21.95 16 14 Si 0.89 21.64 25.04 -169.99 -4.26 17.39 16 15 H -0.26 -6.46 5.87 56.52 0.33 -6.13 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.15 2.76 5.55 -5.20 -0.03 2.73 16 19 C -0.09 -1.55 5.46 -104.63 -0.57 -2.13 16 20 C -0.10 -1.57 9.70 -39.58 -0.38 -1.96 16 21 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 22 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 24 C -0.10 -1.58 9.70 -39.58 -0.38 -1.96 16 25 N -0.59 -11.99 8.61 -13.60 -0.12 -12.11 16 26 C 0.25 4.48 10.90 -16.77 -0.18 4.30 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.16 3.22 7.74 -52.48 -0.41 2.82 16 31 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.09 1.61 7.17 -51.93 -0.37 1.24 16 33 H 0.09 1.53 7.98 -51.93 -0.41 1.12 16 34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.13 2.05 7.63 -52.48 -0.40 1.65 16 39 H 0.16 2.29 7.70 -52.49 -0.40 1.89 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -30.37 339.86 -8.51 -38.87 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.58 Total: 4.17 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -4.39 Total: 7.35 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.32 Total: -56.11 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.72 Total: -16.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.26 Total: 17.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.37 -8.51 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166994063.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.520 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds